LOC120544028 (LOC107730113)


Basic Information

Item Value
gene id LOC120544028
gene name LOC107730113
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29762449 ~ 29796427 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU230221
tgAAGAAGTAAATTTGAAGTGTCCGCAGCTCAAGGCCAGATAAGCGGCACGGACTCCACCGCTTGCTGCGACCGCTCTATGCTCCTCGTTTCTCGCTTAAAGTGCAAGTTTTAAGAGTTATAAAAGAGTTACGCAGAAGTCAAGGGAATCAGATTAGAAAAAGAGCTTTAATGTGCACGAAAGAAAATCAACACACAAGAAAGCCAGGTCCGGACAAAGCTTGCTAAAGATTCCTTTGTCTAACTCCACTTTATATCGTCCAAAAAGAGAGATCCTCCCCCTGAAAAATGCTCCAGTGATCACTCTCAGAACATGCGTGTAAAGCTTTAATTGGCTACTTTTTAGGCCTAAGACCACCTCTTCCTGGGGATTTTCCACCAGATGAAGTCATTTAGCTGAAAACATTTTGAATGTTTACGCTTAAGGCGTTTTTTGGCGTGGGCTGTATAGCAAATGGACTATCCGCAGCTAGCGCGGTTGCTTCAGTGGTATATCATGGTGGCTGTTAGCGACTGTATAACGGCAGACCATCTGTGGATTGTCAGCAGCTACACAGCAACTGATGACTGCACGAGGGGGGAGAGTCTTTGTGTAGCACTGAGGAAGGCAGCCGCTGGAAGCAGTAAGACAGAGAAAGTCTGACTCCTACCAGGCAGACACATTGACATCTCCTATCTATATCACATTAATACACGTATTTGTCCCcataattcaataaaaaaaactggatatttttgttgtttctaaatatgaatgtagaTAACGTTAGCGATAGTGAGaagcttgctacagttgcatttcgaGTGAGAAATCGGcaaaaacgttttatttctgATTTCGGCTactgatttgttttaatgccgCCAGGCGCTcttctctcttcagtcactctctaccTCACTCATTCGCATACCGTTATGTGCACGCGGGCGCTCGTCTCTGCCTTGTCCACCAGTTGACAATCTGGAAATCTAGCTAATAAAGCGAGACCTATCTGTATGTATGCGTTTGTGTTGgtgggaaggtaacctgcacgtCACACGCAGacgtagggttgggtattgtttaggttttttccgataccggtaggaacgattaatttttcagttggcgattattttcccattgctcaattattagcaatttacacaaaacaaatttcaataaggttcaaatctctatttattaaatgtgtttaacactgcactgttcaagtaaatgAATTTGTAGTTGGACTTCAACTATTCAACCTCCTCAATTCAAAGCCCCTAGGTTATGTCTCCTCTGACATTGCGGATCCTGATCCAGTGACCCCCAACCTGTTGCTCATGGGGCGGCATGATTCTTCCCTCCCCCTGGTAACTTATCCTGACTCTGAGCTGCGCAGCCGCCGGCAATGGCGTCATAGTCAGATTCTTTCAGACCATTTCTGGGCCCACTTCCTCAGACATTATCTTCCCTCTCTCCAGTCTAGACAGAAATGGCGCACTGATAATCCTGACCTCCAACGAAACACTGTTGTCCTCATTCTCGACCCTCAGCTTCCCCGATCCCTCTGGCCAGTAGGTAGAGTGATGTCCCTCCATCCCGGCAAGGATGGCCGTTGTAGGGTTGCAGATGTCAAAGTGGGGGATAAACTGTATACAAGACCAGTTGCCCGCCTCATCCCACTCCCTGCCCTACCTGAACCCCCATGACCTTCTACTCTAACACATTTGCAACGCAAATTTGGGGGCGGCTGTTTGGAAGATTCCAGCTCTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTCACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGACTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTTGTTCCAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTTTGTCCTGCCTTGTGTGCGTTTTTGCTCTATaaaccacacacccaaacacgtAACCATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGGATTGAAAGTGATTGGACAGAACTGTTCTTACCGACACCTCCACTGGTCTCAAGCCAGCCACCTACACAGCCCTCTACACCTCCTTTTCACTTACGTTCTTCCTGCGCCTCAAGGTCATGCCTTTTCTGCAGAGCGGCAACCCGTTCCATGAGAGCAGCTTTTTCCGCCTGAGCTTTAATGCGAGCAGAGGATGTTGAAGATaatCCAGTGCAACATCGCCATGTTGTGGCTGAACATCAGACATATTTGCTTCACTTTTAGCGTGATCAGTAAACCACACGCCAATGACACTCAAAACAGCTGTGGCTTCAGTCAATGAAATTCATTAGTACAGCAGTTTCTGGTAACTGTTTCATAGCTTTTCCAATAAAGCTTAATGTTGGCTCAATCTTCACTCATAGAGCACAGTTCTCACTTGTTGTTGGCCCCAATATTGCTTTGCTGTACTTCTAGCTTGCCATCCAGGACAGGTAGGAGTGAAgttttcacacagacacacaaagatcTTCCAGAGATTATTGCAGTTGAAGTTTGTGATTTATTGTAATAAATTGTACAAGACCGATGAGCATACCGGTTGATTTAAGCTCCGAGGTGCTCTGTAGTTTGTGGTCTGGTGAGAACTGTTTGTGCTCCTCCCACCTGTGCCCCTCGCTTCCTGTAACCTATGCCCCCTAAATACAACCAAGTGTGCATTTAATCACTGTAACCCAATatccaaacaaaataaaataaaagcccaACAATAAACATAAATGGCTCCTACACTACATTTCAACTATTTTTCAGGCTGCTAATTAAAGCCATATTGTAATTCTTATTCAGGTTGCTCTAAAAACCAAACCTCCAGTTTAGCCAGACTTACTATCACATCAGGGTGATAGTATACACATCCCATGATGTTACTAGGTAATATCGGGGCATTGTGATATaggattttaaaaataaaggcttaaaaagGGAATAAACGATAAAACAAAGTACTGCTAGAGTGAAAACATAAGTGATGTGCAAAAGttcgttatatatatatatatatat
>XR_005636428.1
TTCAAAGCCCCTAGGTTATGTCTCCTCTGACATTGCGGATCCTGATCCAGTGACCCCCAACCTGTTGCTCATGGGGCGGCATGATTCTTCCCTCCCCCTGGTAACTTATCCTGACTCTGAGCTGCGCAGCCGCCGGCAATGGCGTCATAGTCAGATTCTTTCAGACCATTTCTGGGCCCACTTCCTCAGACATTATCTTCCCTCTCTCCAGTCTAGACAGAAATGGCGCACTGATAATCCTGACCTCCAACGAAACACTGTTGTCCTCATTCTCGACCCTCAGCTTCCCCGATCCCTCTGGCCAGTAGGTAGAGTGATGTCCCTCCATCCCGGCAAGGATGGCCGTTGTAGGGTTGCAGATGTCAAAGTGGGGGATAAACTGTATACAAGACCAGTTGCCCGCCTCATCCCACTCCCTGCCCTACCTGAACCCCCATGACCTTCTACTCTAACACATTTGCAACGCAAATTTGGGGGCGGCTGTTTGGAAGATTCCAGCTCTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTCACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGACTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTTGTTCCAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTTTGTCCTGCCTTGTGTGCGTTTTTGCTCTATaaaccacacacccaaacacgtAACCATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGGATTGAAAGTGATTGGACAGAACTGTTCTTACCGACACCTCCACTGGTCTCAAGCCAGCCACCTACACAGCCCTCTACACCTCCTTTTCACTTACGGTAATTACAAGTTCTTCCTGCGCCTCAAGGTCATGCCTTTTCTGCAGAGCGGCAACCCGTTCCATGAGAGCAGCTTTTTCCGCCTGAGCTTTAATGCGAGCAGAGGATGTTGAAGATGCACGTGATGAAGAACTTGAGTTGTAATTTGATTTAGGTTTTGACACATTAGAAACACTGTCATCAGGTCCGATATCATCTGTGTTTACACTTTCAGCaatggtgtgtgttttatgcaatCCAACCTCTGATAACCACACATTTACATCCTGTATAAAACCATCAAAAGTTTCAATTTTTTGTTGAAACCAGTTATTTTGCTTttcatgttcattttcaggCAGTGGTAACGTCACCAATGACTCATGGTTACTTTTGGCTTCATCACAGATGTTGATTAATGTAACCAAGTTAGATTGCACTTCATTTGCCTTTTCCTTTGATTTCATGAGCTCTTTCAACAATTCTTTTGACTTTTTAGCTTCTTTACATTTCAAGTTTCTTGTTTTCTGACTGCTTTCAATGAACATTTCCAAACCTTTAGCAGTGTGTTTAATAacccttttttcct
>XR_005636429.1
aatgAATTTGTAGTTGGACTTCAACTATTCAACCTCCTCAATTCAAAGCCCCTAGGTTATGTCTCCTCTGACATTGCGGATCCTGATCCAGTGACCCCCAACCTGTTGCTCATGGGGCGGCATGATTCTTCCCTCCCCCTGGTAACTTATCCTGACTCTGAGCTGCGCAGCCGCCGGCAATGGCGTCATAGTCAGATTCTTTCAGACCATTTCTGGGCCCACTTCCTCAGACATTATCTTCCCTCTCTCCAGTCTAGACAGAAATGGCGCACTGATAATCCTGACCTCCAACGAAACACTGTTGTCCTCATTCTCGACCCTCAGCTTCCCCGATCCCTCTGGCCAGTAGGTAGAGTGATGTCCCTCCATCCCGGCAAGGATGGCCGTTGTAGGGTTGCAGATGTCAAAGTGGGGGATAAACTGTATACAAGACCAGTTGCCCGCCTCATCCCACTCCCTGCCCTACCTGAACCCCCATGACCTTCTACTCTAACACATTTGCAACGCAAATTTGGGGGCGGCTGTTTGGAAGATTCCAGCTCTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTCACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGACTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTTGTTCCAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTTTGTCCTGCCTTGTGTGCGTTTTTGCTCTATaaaccacacacccaaacacgtAACCATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGGATTGAAAGTGATTGGACAGAACTGTTCTTACCGACACCTCCACTGGTCTCAAGCCAGCCACCTACACAGCCCTCTACACCTCCTTTTCACTTACGGTAATTACAAGTTCTTCCTGCGCCTCAAGGTCATGCCTTTTCTGCAGAGCGGCAACCCGTTCCATGAGAGCAGCTTTTTCCGCCTGAGCTTTAATGCGAGCAGAGGATGTTGAAGATGCACGTGATGAAGAACTTGAGTTGTAATTTGATTTAGGTTTTGACACATTAGAAACACTGTCATCAGGTCCGATATCATCTGTGTTTACACTTTCAGCaatggtgtgtgttttatgcaatCCAACCTCTGATAACCACACATTTACATCCTGTATAAAACCATCAAAAGTTTCAATTTTTTGTTGAAACCAGTTATTTTGCTTttcatgttcattttcaggCAGTGGTAACGTCACCAATGACTCATGGTTACTTTTGGCTTCATCACAGATGTTGATTAATaatCCAGTGCAACATCGCCATGTTGTGGCTGAACATCAGACATATTTGCTTCACTTTTAGCGTGATCAGTAAACCACACGCCAATGACACTCAAAACAGCTGTGGCTTCAGTCAATGAAATTCATTAGTACAGCAGTTTCTGGTAACTGTTTCATAGCTTTTCCAATAAAGCTTAATGTTGGCTCAATCTTCA
>XR_005636430.1
CCTCCTCAATTCAAAGCCCCTAGGTTATGTCTCCTCTGACATTGCGGATCCTGATCCAGTGACCCCCAACCTGTTGCTCATGGGGCGGCATGATTCTTCCCTCCCCCTGGTAACTTATCCTGACTCTGAGCTGCGCAGCCGCCGGCAATGGCGTCATAGTCAGATTCTTTCAGACCATTTCTGGGCCCACTTCCTCAGACATTATCTTCCCTCTCTCCAGTCTAGACAGAAATGGCGCACTGATAATCCTGACCTCCAACGAAACACTGTTGTCCTCATTCTCGACCCTCAGCTTCCCCGATCCCTCTGGCCAGTAGGTAGAGTGATGTCCCTCCATCCCGGCAAGGATGGCCGTTGTAGGGTTGCAGATGTCAAAGTGGGGGATAAACTGTATACAAGACCAGTTGCCCGCCTCATCCCACTCCCTGCCCTACCTGAACCCCCATGACCTTCTACTCTAACACATTTGCAACGCAAATTTGGGGGCGGCTGTTTGGAAGATTCCAGCTCTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTCACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGACTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTTGTTCCAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTTTGTCCTGCCTTGTGTGCGTTTTTGCTCTATaaaccacacacccaaacacgtAACCATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGGATTGAAAGTGATTGGACAGAACTGTTCTTACCGACACCTCCACTGGTCTCAAGCCAGCCACCTACACAGCCCTCTACACCTCCTTTTCACTTACGGTAATTACAAGTTCTTCCTGCGCCTCAAGGTCATGCCTTTTCTGCAGAGCGGCAACCCGTTCCATGAGAGCAGCTTTTTCCGCCTGAGCTTTAATGCGAGCAGAGGATGTTGAAGATGCACGTGATGAAGAACTTGAGTTaatCCAGTGCAACATCGCCATGTTGTGGCTGAACATCAGACATATTTGCTTCACTTTTAGCGTGATCAGTAAACCACACGCCAATGACACTCAAAACAGCTGTGGCTTCAGTCAATGAAATTCATTAGTACAGCAGTTTCTGGTAACTGTTTCATAGCTTTTCCAATAAAGCTTAATGTTGGCTCAATCTTCA
>XR_005636431.1
CTCAATTCAAAGCCCCTAGGTTATGTCTCCTCTGACATTGCGGATCCTGATCCAGTGACCCCCAACCTGTTGCTCATGGGGCGGCATGATTCTTCCCTCCCCCTGGTAACTTATCCTGACTCTGAGCTGCGCAGCCGCCGGCAATGGCGTCATAGTCAGATTCTTTCAGACCATTTCTGGGCCCACTTCCTCAGACATTATCTTCCCTCTCTCCAGTCTAGACAGAAATGGCGCACTGATAATCCTGACCTCCAACGAAACACTGTTGTCCTCATTCTCGACCCTCAGCTTCCCCGATCCCTCTGGCCAGTAGGTAGAGTGATGTCCCTCCATCCCGGCAAGGATGGCCGTTGTAGGGTTGCAGATGTCAAAGTGGGGGATAAACTGTATACAAGACCAGTTGCCCGCCTCATCCCACTCCCTGCCCTACCTGAACCCCCATGACCTTCTACTCTAACACATTTGCAACGCAAATTTGGGGGCGGCTGTTTGGAAGATTCCAGCTCTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTCACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGACTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTTGTTCCAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTTTGTCCTGCCTTGTGTGCGTTTTTGCTCTATaaaccacacacccaaacacgtAACCATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGGATTGAAAGTGATTGGACAGAACTGTTCTTACCGACACCTCCACTGGTCTCAAGCCAGCCACCTACACAGCCCTCTACACCTCCTTTTCACTTACGTTCTTCCTGCGCCTCAAGGTCATGCCTTTTCTGCAGAGCGGCAACCCGTTCCATGAGAGCAGCTTTTTCCGCCTGAGCTTTAATGCGAGCAGAGGATGTTGAAGATGCACGTGATGAAGAACTTGAGTTGTAATTTGATTTAGGTTTTGACACATTAGAAACACTGTCATCAGGTCCGATATCATCTGTGTTTACACTTTCAGCaatggtgtgtgttttatgcaatCCAACCTCTGATAACCACACATTTACATCCTGTATAAAACCATCAAAAGTTTCAATTTTTTGTTGAAACCAGTTATTTTGCTTttcatgttcattttcaggCAGTGGTAACGTCACCAATGACTCATGGTTACTTTTGGCTTCATCACAGATGTTGATTAATGTAACCAAGTTAGATTGCACTTCATTTGCCTTTTCCTTTGATTTCATGAGCTCTTTCAACAATTCTTTTGACTTTTTAGCTTCTTTACATTTCAAGTTTCTTGTTTTCTGACTGCTTTCAATGAACATTTCCAAACCTTTAGCAGTGTGTTTAATAacccttttttcct

Function

NR:

description
PREDICTED: uncharacterized protein LOC107730113

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230221 True 3084 TUCP 0.44 5 29762449 29796427
XR_005636428.1 False 1448 lncRNA 0.46 3 29763295 29767535
XR_005636429.1 False 1513 lncRNA 0.46 4 29763096 29767576
XR_005636430.1 False 1222 lncRNA 0.49 4 29763096 29767544
XR_005636431.1 False 1442 lncRNA 0.46 3 29763295 29767540

Neighbor

gene id symbol gene type direction distance location
btg3 LOC102786047 coding downstream 774 29755727 ~ 29761675 (-)
cxadr cxadr coding downstream 13866 29707207 ~ 29748583 (-)
rnft1 rnft1 coding downstream 785071 28971468 ~ 28977378 (-)
ptrh2 ptrh2 coding downstream 884564 28875990 ~ 28877885 (-)
pdzd3b NA coding downstream 946891 28811383 ~ 28815558 (-)
c16h21orf91 LOC102786549,LOC102292364,LOC101464061,LOC103361253 coding upstream 10418 29806845 ~ 29826242 (-)
ripk4 ripk4 coding upstream 37163 29833590 ~ 29850225 (-)
prdm15 prdm15,LOC102786849 coding upstream 53358 29849785 ~ 29879284 (-)
zbtb21 zbtb21 coding upstream 108101 29904528 ~ 29912667 (-)
LOC120544725 LOC794378,LOC106676715 coding upstream 124460 29920887 ~ 29923512 (-)
LOC120544741 NA non-coding downstream 83584 29668382 ~ 29678865 (-)
G169678 NA non-coding downstream 611971 29149084 ~ 29150478 (-)
G169648 NA non-coding downstream 762712 28999480 ~ 28999737 (-)
G169640 NA non-coding downstream 815793 28946310 ~ 28946656 (-)
G169620 cltc non-coding downstream 895361 28865481 ~ 28867088 (-)
LOC120544726 NA non-coding upstream 128640 29925067 ~ 29926453 (-)
G169905 NA non-coding upstream 249714 30046141 ~ 30115419 (-)
G169912 LOC103363040,LOC108244715 non-coding upstream 468123 30264550 ~ 30266434 (-)
G169927 NA non-coding upstream 555446 30351873 ~ 30365637 (-)
G169928 NA non-coding upstream 591427 30387854 ~ 30388055 (-)
atp5l atp5l,LOC102215954 other downstream 954008 28804378 ~ 28808441 (-)
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432,LOC107722775,LOC107712369 other downstream 1098398 28654877 ~ 28664051 (-)
LOC120575713 mlxipl other downstream 1414959 28314169 ~ 28347490 (-)
srrm3 srrm3,LOC103395181,LOC102790399,LOC102288945 other downstream 1449316 28217243 ~ 28313133 (-)
LOC120544668 tspoap1 other downstream 1639831 28047607 ~ 28122618 (-)
LOC120543707 c2cd2 other upstream 86379 29882806 ~ 29901937 (-)
map6a map6,LOC102787944,LOC103142112 other upstream 149241 29945668 ~ 29971080 (-)
ei24 ei24 other upstream 486653 30283080 ~ 30294530 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other upstream 510422 30306849 ~ 30341246 (-)
si:ch73-1a9.3 NA other upstream 614802 30411229 ~ 30414735 (-)

Expression


Co-expression Network