G170078


Basic Information

Item Value
gene id G170078
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30888006 ~ 30889575 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU230632
ggttacggtgaataagctaaattcccaataagtcggtgtgttccttttaaGAAACCCATTTGTTGGGGGGGTGACCAGCATTTGGAGGCTCTGATAGGCACAAATAATGCAAACATGCAGAAACATCATGTATCGGACCAACTTGCGACTGATGTGTGCGCAAGCTTGGAGGGTTTTCTATTTGTAATTGTTAACATTCACTCCAAGGACCAAGTGAATAAATGGAAAACGTCTAACTCATTTCAGGCTCGTAAGCTGAAGGTTATGGGAACAAGTCACAGGCAGTTATTTTGTCCTCCTGCATCGCTGCACTGAACCTCCACCTGTTGTCACTGGAGAACAGTATTGGTAGTTAAGTGCCCTCCCTTAATAGAAAAATACTCAATTTCAGTCAAGAGTAGACTCTTTATCTACAGATATTGAACCTACTATGCTACTACATTTGATTAATCCCACTCTCATTTAGTAGTCCCTTTTTTAGTTTCATTTATTAACACCATGGCATCAAGGTCAAATAGTCAAATGACACCTGTAGGGAATATCTTTAAGTAACAGTTTATGATACAACCACTAGGTGGCATACCTTTCCAGCTTATTTCAGACATTGCCAAACATATTGTGGATGGAGGAACTACTAGCTAACTACTGTAGAACTCTTCGGATCTTTGAATCAGTTCTCATGTACTGGATCTGTGGTGTGAAATGAAGGGCTTTTTATTTgcaatttgtttttttgctgctgtaAAATTGTGGACATGTAATGGTAACAAAAGAACCTGGAGCTTGAAATAACTTGTTGGAAGATGCACAACATAATGGTTGTATggacatatgtgtgtgtggcctccCGAACTGCTGTGTGCTGGATTATCCCCTGAAACAACACATTACCCATCCATAGTTCATTATGCATACACGCTATGCCACTAACTCTCATATGCTTGGGTATAACAATTGCGTGAACCCAGTATTACACACATTCATAAGCACAATGTATGAAAGATAAGTATTAACATTGTTCAAATGTCTGTGTGGAATCTTCaatgtatgttgtttttttgaaatCCCTGCTCATCGGTAGAGGTGAGCAGTTGTCAAAGAGGGTGCCTTAATGTTATCGTTGCAGTCCCAAGTAATCCAAGTGGCCTTGATGTTCGTGATAAACAAAACCATTCCCAACTGTCCCTTGTGTTGTGCAGGCTGCCCTTCCCCTGGTTCTAAGCAGTTAACGCATCAGGACACACAATACCGGCTtcgaatgcaaagtctgcaccTGAATCTTAATTTGTTAGGTTGTTCCTAACTGCAACTGTagctttaagttaaaaaagaaaaaaaacaaaaaaacattaatgtgTTGAGGCCAGAGGAGCAAACTGTTATCATTTCTTTTGAACTTTGTTCATGTGCCAGTCTTTATTGATGTCCTGTATTGTCAAATAAAAG
>TU230633
agtaggattactggaaccattcacctgcatgttctgtgatgggctgatgccactggagccgtcagacagccttacagcacgcacggagatgagaagggtatgtatcgacttgtattactctgggggttacggtgaataagctaaattcccaataagtcggtgtgttccttttaaGAAACCCATTTGTTGGGGGGGTGACCAGCATTTGGAGGCTCTGATAGGCACAAATAATGCAAACATGCAGAAACATCATGTATCGGACCAACTTGCGACTGATGTGTGCGCAAGCTTGGAGGGTTTTCTATTTGTAATTGTTAACATTCACTCCAAGGACCAAGTGAATAAATGGAAAACGTCTAACTCATTTCAGGCTCGTAAGCTGAAGGTTATGGGAACAAGTCACAGGCAGTTATTTTGTCCTCCTGCATCGCTGCACTGAACCTCCACCTGTTGTCACTGGAGAACAGTATTGGTAGTTAAGTGCCCTCCCTTAATAGAAAAATACTCAATTTCAGTCAAGAGTAGACTCTTTATCTACAGATATTGAACCTACTATGCTACTACATTTGATTAATCCCACTCTCATTTAGTAGTCCCTTTTTTAGTTTCATTTATTAACACCATGGCATCAAGGTCAAATAGTCAAATGACACCTGTAGGGAATATCTTTAAGTAACAGTTTATGATACAACCACTAGGTGGCATACCTTTCCAGCTTATTTCAGACATTGCCAAACATATTGTGGATGGAGGAACTACTAGCTAACTACTGTAGAACTCTTCGGATCTTTGAATCAGTTCTCATGTACTGGATCTGTGGTGTGAAATGAAGGGCTTTTTATTTgcaatttgtttttttgctgctgtaAAATTGTGGACATGTAATGGTAACAAAAGAACCTGGAGCTTGAAATAACTTGTTGGAAGATGCACAACATAATGGTTGTATggacatatgtgtgtgtggcctccCGAACTGCTGTGTGCTGGATTATCCCCTGAAACAACACATTACCCATCCATAGTTCATTATGCATACACGCTATGCCACTAACTCTCATATGCTTGGGTATAACAATTGCGTGAACCCAGTATTACACACATTCATAAGCACAATGTATGAAAGATAAGTATTAACATTGTTCAAATGTCTGTGTGGAATCTTCaatgtatgttgtttttttgaaatCCCTGCTCATCGGTAGAGGTGAGCAGTTGTCAAAGAGGGTGCCTTAATGTTATCGTTGCAGTCCCAAGTAATCCAAGTGGCCTTGATGTTCGTGATAAACAAAACCATTCCCAACTGTCCCTTGTGTTGTGCAGGCTGCCCTTCCCCTGGTTCTAAGCAGTTAACGCATCAGGACACACAATACCGGCTtcgaatgcaaagtctgcaccTGAATCTTAATTTGTTAGGTTGTTCCTAACTGCAACTGTagctttaagttaaaaaagaaaaaaaacaaaaaaacattaatgtgTTGAGGCCAGAGGAGCAAACTGTTATCATTTCTTTTGAACTTTGTTCATGTGCCAGTCTTTATTGATGTCCTGTATTGTCAAATAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230632 False 1446 lncRNA 0.40 1 30888006 30889451
TU230633 True 1570 lncRNA 0.40 1 30888006 30889575

Neighbor

gene id symbol gene type direction distance location
LOC120543607 NA coding downstream 12246 30859601 ~ 30875760 (-)
LOC120543889 NA coding downstream 30786 30853556 ~ 30857220 (-)
LOC120575605 LOC104951202 coding downstream 178665 30702500 ~ 30709341 (-)
mmp30 NA coding downstream 186376 30697366 ~ 30701630 (-)
acat1 acat1 coding downstream 191265 30688426 ~ 30696741 (-)
acer3 acer3 coding upstream 917 30890492 ~ 30901561 (-)
serpinh1a LOC103370387,LOC104930320 coding upstream 14056 30903631 ~ 30910364 (-)
samsn1b NA coding upstream 77056 30966631 ~ 30988577 (-)
wscd1b wscd1 coding upstream 354418 31243993 ~ 31265687 (-)
bhlha9 bhlha9 coding upstream 446426 31336001 ~ 31337657 (-)
LOC120543896 NA non-coding downstream 96130 30788469 ~ 30791876 (-)
G170054 NA non-coding downstream 156118 30729002 ~ 30731888 (-)
G169956 NA non-coding downstream 435500 30450547 ~ 30452506 (-)
G169941 NA non-coding downstream 458950 30428848 ~ 30429056 (-)
G169928 NA non-coding downstream 499951 30387854 ~ 30388055 (-)
G170085 NA non-coding upstream 24127 30913702 ~ 30914239 (-)
G170092 NA non-coding upstream 47331 30936906 ~ 30937273 (-)
G170106 NA non-coding upstream 132329 31021904 ~ 31022240 (-)
G170129 NA non-coding upstream 218467 31108042 ~ 31110208 (-)
G170138 NA non-coding upstream 245316 31134891 ~ 31135385 (-)
LOC120543892 LOC103394800 other downstream 36952 30846998 ~ 30851054 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other downstream 57697 30737565 ~ 30830309 (-)
LOC120575604 NA other downstream 155924 30718215 ~ 30732082 (-)
si:ch73-1a9.3 NA other downstream 473271 30411229 ~ 30414735 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other downstream 546760 30306849 ~ 30341246 (-)
G170098 NA other upstream 67926 30957501 ~ 30958498 (-)
G170463 NA other upstream 1312134 32201709 ~ 32202206 (-)
LOC120543978 fez1 other upstream 1553711 32443286 ~ 32491305 (-)
ntm LOC100703630,LOC102197934,LOC101488072,LOC102307721,LOC103141059 other upstream 2679046 33568621 ~ 34100246 (-)
G170802 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC103356012,LOC107574861,LOC108179079 other upstream 3419419 34308994 ~ 34309714 (-)

Expression


Co-expression Network