LOC120544288


Basic Information

Item Value
gene id LOC120544288
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31566368 ~ 31590013 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU230927
CTGAAAGCAGCTGTGAAAGATACAATGGGAGGCTGCTGTGGAATGACTGATTGAGAGAGCCAGCAGAAATGAACTGTCACTTGAGGAACAGGCTATTCTGCACCGAAGCTGGAGACACGCCAACCTGATGAACGCCAGCTTCAAAGACAGCAGATATCTTACCTGGGCTCATCCCATCCTATCTGGCCCATGATGCCTTCCATCCACATCAGGTTTTCACGCACCACTGAGAAGAACTGCACCTTGTCGGTTACTGAAGTGACCTGGACGCGACTGGCCTCACAGGAGCTCAGCAGCTCCTTCCAGGCGTCCATCACTTCCTGCTCTTTGACCATGATGGCCTCCGCCTTCTCACCAGCATAGATGGTTCTCAACTGGGCAGCGTTCTCCTGCAGCTGCCTCACCTGCACCAAGACGGGATGAAGGGGGTTAGTGGCTTCATCGCAGTATCGTCGCAGTGTAGAACAATGGTTGTGTTTGTCgaaattgaactgaactgattTAATTAGGGGTTTTGCCTGTTGGtcgaacaaaacaaacaaacaaacaagcacatGTTTAAGTAAactcctatttttttttttcacttcatgTTCCACGAGCTTGGTCTGAACTTAGAAAAACTGCTTAAGTTTCAGTGCACCCGACTCCTGCAACAAATTGCATCACTTTCTTAAAATCAACTCAATTGTGCCTCTTGGACAATTTAGAAATCTGGTTCTAAACCGgcaaacttctacttgtaactgctttacatcattgtattttcttttgcatcccTATTATCCTAATTTGTTTATCAAATAATTTTCCaattcaaaatgttttattgtctctCTATATTTCTTATGATTGTACTTTCTgtgttgttctgtttttgtctttgtaatctgACTCGATGACATTGAAAATAAAGGTCCCTCAATGGTCTCTcgaggataaataaaggttgaatgaatgaatgaagccTAAGGCAGAGAGAAATCAACCTTTACTATCAAGAGAGGCATTTTGAAACATATTTGAG
>XR_005636477.1
cgtctaccccagttcatgcgaatgcaaatgtaaaatttcaagccaaaaggaatacttggaattgatgctggtggtaaatattcatgaaaaaaggacaagtttttGAACGGGCAACACCGATTTTGCTCGGGACAACACAGCTCCATGCCAAGGATGGAGCCCCCTGCTTGCAGAGAGGCAGGTGTATGGAGCAAAGTTTGGCCTCGGGCTGACCTAAAAATCATGCATGGGAGCTGGCCCCGTATCCTATGGCTTTCATAATGCAGTGCTGCATTCCTCCTCTTGGCACAGGCTCTCTGCTTAACTGCTGCTAGCGCTCACTCTCTCACATCCCTCTCTCTCGCTGCTATCTTTCCTCAGCCTCGCTCTGCCTCTCATAATGCAGAGCCAGCAGAAAGcaggtctctctgtctctctctcctctcttggcTTTACTGACACCGAGTGAGGCAGAGGGAGAAGAAATCAGAGAGGgggtggagagaggagaggagaaaggcaGAGTAAAGGAAGGAGGGAAGCAAAAGGAGAAAGAATCAAAGGTTTATGGAACAGGAAAGAGGCTGCGGGTGTGCTGGGCTGTGCTACAGCCTGGGCACAGTTGGATCCAAAGGGCATCTGTGAAGTGAATTTTCGAGGTAGTCGTGgctgaaatatttatttatttatttatttttaaatggctGCCACATATGAATCATGCTATTATGGCAGCATTGTGTTGCCAAATTCTGCAGGCTTTCTTGTTATGCTGATGCAGCACAGTGAGAAAGTGGGTGGGATTAAAGGGCTTGTTTTATACTACTGGCACAAACAACAATGTATTCACACCTACTGTATGCATAAAAGTAACACTATGCAACTTATGCTATTACCTGCAAAAGACTTGCACTAACGGTGAATCAAAAACCATccaaacaaaacacagaacagACATCCAAATTCTAATTAAGCTAAACAAAGAATCATAATGCTGAACATTTCAACAAATGTGGATAGCAGCGTCCTTGTTTGATGCCATGTTGTCCCTTCAGCACAACCCACAATGCAACATAACGCTATGTATTACAGCCACGTCAAACCAGCAAATGTCAACTTTGAGTACACGGGCCATTGTTTACAATTCTGGATTGTTCCCTCTTGATACAAACTTCGTTTAGCTGTGACATACTTCACACTAAAAATACTTTATTATGCATTCAGGATCTTTGGTTATTTAAGTATATTTAATGTGTCTTGGATTAGTATATTAATAAATTGATTTACCTTTTTCTAAAATACATATGCCAATTTGGGTGAATGTCCTCAGTGATTAAGATGGAAACACTGCAGGTGAATAGGGAAACCATTTTAACTAACAGATATCACCGTTGAACTTCCCCAGTTaattactgacattaagacaattgttttttattacaagttttctgaaattttgCACTTactatttgtttacatttccagaacagaaatgtgaatattggaTAAAGCCAGCTTCGAAATTCTTGTTTCATTTTATTGGCATATTAGACTCAAAGGTTCTTACAGAAGGGATTTTGGATATCTCTTTTTATCACTCCATAAATCACAAAATACATACCgaaattgtgttttttagaATAAAATGTTCTAAAAACCTCTGTACAAACCCTTGGAATATGGAAAGTTTGGTGTTTGTAAGGGCTACTGAAGAGAGATTTCTGGCTCAGAGTATATCAAAACTCAATTTGAGAAAACAGCCTTAAAAgatatggattgtaaaatttctATACTTTT
>XR_005636478.1
CTCAAGTTTATGTCAGTGTTTTGAATGTCAAAGAAATGAACTGTCACTTGAGGAACAGGCTATTCTGCACCGAAGCTGGAGACACGCCAACCTGATGAACGCCAGCTCGGGACAACACAGCTCCATGCCAAGGATGGAGCCCCCTGCTTGCAGAGAGGCAGGTGTATGGAGCAAAGTTTGGCCTCGGGCTGACCTAAAAATCATGCATGGGAGCTGGCCCCGTATCCTATGGCTTTCATAATGCAGTGCTGCATTCCTCCTCTTGGCACAGGCTCTCTGCTTAACTGCTGCTAGCGCTCACTCTCTCACATCCCTCTCTCTCGCTGCTATCTTTCCTCAGCCTCGCTCTGCCTCTCATAATGCAGAGCCAGCAGAAAGcaggtctctctgtctctctctcctctcttggcTTTACTGACACCGAGTGAGGCAGAGGGAGAAGAAATCAGAGAGGgggtggagagaggagaggagaaaggcaGAGTAAAGGAAGGAGGGAAGCAAAAGGAGAAAGAATCAAAGGTTTATGGAACAGGAAAGAGGCTGCGGGTGTGCTGGGCTGTGCTACAGCCTGGGCACAGTTGGATCCAAAGGGCATCTGTGAAGTGAATTTTCGAGGTAGTCGTGgctgaaatatttatttatttatttatttttaaatggctGCCACATATGAATCATGCTATTATGGCAGCATTGTGTTGCCAAATTCTGCAGGCTTTCTTGTTATGCTGATGCAGCACAGTGAGAAAGTGGGTGGGATTAAAGGGCTTGTTTTATACTACTGGCACAAACAACAATGTATTCACACCTACTGTATGCATAAAAGTAACACTATGCAACTTATGCTATTACCTGCAAAAGACTTGCACTAACGGTGAATCAAAAACCATccaaacaaaacacagaacagACATCCAAATTCTAATTAAGCTAAACAAAGAATCATAATGCTGAACATTTCAACAAATGTGGATAGCAGCGTCCTTGTTTGATGCCATGTTGTCCCTTCAGCACAACCCACAATGCAACATAACGCTATGTATTACAGCCACGTCAAACCAGCAAATGTCAACTTTGAGTACACGGGCCATTGTTTACAATTCTGGATTGTTCCCTCTTGATACAAACTTCGTTTAGCTGTGACATACTTCACACTAAAAATACTTTATTATGCATTCAGGATCTTTGGTTATTTAAGTATATTTAATGTGTCTTGGATTAGTATATTAATAAATTGATTTACCTTTTTCTAAAATACATATGCCAATTTGGGTGAATGTCCTCAGTGATTAAGATGGAAACACTGCAGGTGAATAGGGAAACCATTTTAACTAACAGATATCACCGTTGAACTTCCCCAGTTaattactgacattaagacaattgttttttattacaagttttctgaaattttgCACTTactatttgtttacatttccagaacagaaatgtgaatattggaTAAAGCCAGCTTCGAAATTCTTGTTTCATTTTATTGGCATATTAGACTCAAAGGTTCTTACAGAAGGGATTTTGGATATCTCTTTTTATCACTCCATAAATCACAAAATACATACCgaaattgtgttttttagaATAAAATGTTCTAAAAACCTCTGTACAAACCCTTGGAATATGGAAAGTTTGGTGTTTGTAAGGGCTACTGAAGAGAGATTTCTGGCTCAGAGTATATCAAAACTCAATTTGAGAAAACAGCCTTAAAAgatatggattgtaaaatttctATACTTTT
>XR_005636479.1
CCATGATGGCCTCCGCCTTCTCACCAGCATAGATGGTTCTCAACTGGGCAGCGTTCTCCTGCAGCTGCCTCACCTGCACCAAGACGGGATGAAGGGGCTCGGGACAACACAGCTCCATGCCAAGGATGGAGCCCCCTGCTTGCAGAGAGGCAGGTGTATGGAGCAAAGTTTGGCCTCGGGCTGACCTAAAAATCATGCATGGGAGCTGGCCCCGTATCCTATGGCTTTCATAATGCAGTGCTGCATTCCTCCTCTTGGCACAGGCTCTCTGCTTAACTGCTGCTAGCGCTCACTCTCTCACATCCCTCTCTCTCGCTGCTATCTTTCCTCAGCCTCGCTCTGCCTCTCATAATGCAGAGCCAGCAGAAAGcaggtctctctgtctctctctcctctcttggcTTTACTGACACCGAGTGAGGCAGAGGGAGAAGAAATCAGAGAGGgggtggagagaggagaggagaaaggcaGAGTAAAGGAAGGAGGGAAGCAAAAGGAGAAAGAATCAAAGGTTTATGGAACAGGAAAGAGGCTGCGGGTGTGCTGGGCTGTGCTACAGCCTGGGCACAGTTGGATCCAAAGGGCATCTGTGAAGTGAATTTTCGAGGTAGTCGTGgctgaaatatttatttatttatttatttttaaatggctGCCACATATGAATCATGCTATTATGGCAGCATTGTGTTGCCAAATTCTGCAGGCTTTCTTGTTATGCTGATGCAGCACAGTGAGAAAGTGGGTGGGATTAAAGGGCTTGTTTTATACTACTGGCACAAACAACAATGTATTCACACCTACTGTATGCATAAAAGTAACACTATGCAACTTATGCTATTACCTGCAAAAGACTTGCACTAACGGTGAATCAAAAACCATccaaacaaaacacagaacagACATCCAAATTCTAATTAAGCTAAACAAAGAATCATAATGCTGAACATTTCAACAAATGTGGATAGCAGCGTCCTTGTTTGATGCCATGTTGTCCCTTCAGCACAACCCACAATGCAACATAACGCTATGTATTACAGCCACGTCAAACCAGCAAATGTCAACTTTGAGTACACGGGCCATTGTTTACAATTCTGGATTGTTCCCTCTTGATACAAACTTCGTTTAGCTGTGACATACTTCACACTAAAAATACTTTATTATGCATTCAGGATCTTTGGTTATTTAAGTATATTTAATGTGTCTTGGATTAGTATATTAATAAATTGATTTACCTTTTTCTAAAATACATATGCCAATTTGGGTGAATGTCCTCAGTGATTAAGATGGAAACACTGCAGGTGAATAGGGAAACCATTTTAACTAACAGATATCACCGTTGAACTTCCCCAGTTaattactgacattaagacaattgttttttattacaagttttctgaaattttgCACTTactatttgtttacatttccagaacagaaatgtgaatattggaTAAAGCCAGCTTCGAAATTCTTGTTTCATTTTATTGGCATATTAGACTCAAAGGTTCTTACAGAAGGGATTTTGGATATCTCTTTTTATCACTCCATAAATCACAAAATACATACCgaaattgtgttttttagaATAAAATGTTCTAAAAACCTCTGTACAAACCCTTGGAATATGGAAAGTTTGGTGTTTGTAAGGGCTACTGAAGAGAGATTTCTGGCTCAGAGTATATCAAAACTCAATTTGAGAAAACAGCCTTAAAAgatatggattgtaaaatttctATACTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230927 False 1027 lncRNA 0.43 3 31579840 31590013
XR_005636477.1 True 1776 lncRNA 0.40 3 31566368 31576265
XR_005636478.1 False 1756 lncRNA 0.40 3 31566368 31589887
XR_005636479.1 False 1748 lncRNA 0.41 3 31566368 31580535

Neighbor

gene id symbol gene type direction distance location
tiprl NA coding downstream 24197 31531657 ~ 31542171 (-)
ska2 NA coding downstream 37810 31509560 ~ 31528558 (-)
hlcs hlcs,LOC102212994,LOC105419148 coding downstream 89934 31430440 ~ 31476434 (-)
riox2 mina coding downstream 195362 31357829 ~ 31371006 (-)
bhlha9 bhlha9 coding downstream 228711 31336001 ~ 31337657 (-)
LOC120543743 irf2bp1 coding upstream 21762 31611775 ~ 31616648 (-)
hnrnpl LOC102310682,LOC102197207,LOC103368863 coding upstream 29694 31619707 ~ 31633080 (-)
slc8a2a LOC106917460,LOC103141039 coding upstream 44923 31634936 ~ 31669195 (-)
nccrp1 NA coding upstream 81166 31671179 ~ 31680058 (-)
mark4a mark4,LOC101472647,LOC102194939,LOC100708718,LOC107386318 coding upstream 114996 31705009 ~ 31742252 (-)
G170209 NA non-coding downstream 183877 31382209 ~ 31382491 (-)
G170205 NA non-coding downstream 218967 31346574 ~ 31347401 (-)
G170202 NA non-coding downstream 275355 31290711 ~ 31291013 (-)
G170154 NA non-coding downstream 421780 31143942 ~ 31144588 (-)
G170147 NA non-coding downstream 425494 31140478 ~ 31140874 (-)
G170332 NA non-coding upstream 154838 31744851 ~ 31745684 (-)
G170424 NA non-coding upstream 310073 31900086 ~ 31901144 (-)
G170425 LOC103357888 non-coding upstream 311999 31902012 ~ 31906986 (-)
G170432 NA non-coding upstream 373587 31963600 ~ 32000128 (-)
G170444 NA non-coding upstream 421460 32011473 ~ 32011840 (-)
G170098 NA other downstream 607870 30957501 ~ 30958498 (-)
LOC120543892 LOC103394800 other downstream 715314 30846998 ~ 30851054 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other downstream 736059 30737565 ~ 30830309 (-)
LOC120575604 NA other downstream 834286 30718215 ~ 30732082 (-)
si:ch73-1a9.3 NA other downstream 1151633 30411229 ~ 30414735 (-)
G170463 NA other upstream 611696 32201709 ~ 32202206 (-)
LOC120543978 fez1 other upstream 853273 32443286 ~ 32491305 (-)
ntm LOC100703630,LOC102197934,LOC101488072,LOC102307721,LOC103141059 other upstream 1978608 33568621 ~ 34100246 (-)
G170802 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC103356012,LOC107574861,LOC108179079 other upstream 2718981 34308994 ~ 34309714 (-)
cblb cblb other upstream 3333360 34923373 ~ 35016119 (-)

Expression


Co-expression Network