pdzd3b


Basic Information

Item Value
gene id pdzd3b
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28811383 ~ 28815558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776704.1
ATGCTATTTGTTTTTCAAGGTTCGGTGGAAATCATGGGGTTGACAAAAAAATATACGTTTAATCCTAAAGAAGGAATAGACAACCCAGTGATGGTCATCACAGAAGACGCAGACTCTGCGTCGACACCCAGCCCACGTCTGTGTGTCCTTAAACGAGAAGAAGGGGAATCTTTTGGCTTCCATCTGCGGGTGGAGAGGGGGCGCCAGGGTCACATAATCAGAAATGTAGTGtcaggaggggtggggggatgCAGTGGCCTTCAAGATGGAGACAGGCTTCTGGAAGTCAACAACTGCTATGTTGACGATGTTCCTCACAATGAGGTGGCTAGGAAGATAAAGCTAAGTGGACACCAGCTATGTTTATTAGTGTTGGATGGGGAGGAGTATGAGCAGGCTGTGTCCCGAGGTGAAGACCTCCGAGGTCTGGCCAGAGCACACACTGGTGAGGGCTGCAAAGCACCCAGACTCTGCCACATCTCCAAAGATCCTGTCTCCGGCCTGGGCATCAACTTCACCCCTCTGGAAGGAGAGAAAGGGCGTTTCTCAGTGAGCCTGGTTACAGGAGGTGCAGCTGAAAAGGCCGGTGTGTGTAAGGGAGATCACCTGGTGTGGATGGATGGAGCAACAGTGTCCAATCTCACGCACTCTGCACTCAGCAGGATGATGAAAAAATGTGGCGATCACATCACTATCCTAGTGATCGACAGTGAGAGTGAGAAGGAATACATGCGACACAGGATGCCCATCCTGCCCACCATGGCTGTTCCACATAACCTTCCCCATAGAGCCAGAAAACTCCACCTGGTGTCTGGGCCGTCGGGGTACGGCTTCCTCCTTCGGCTGGAGAAGGCGCCATCAGGACGCACATTTCATATTCTGCGTGAGATGGACAGTGGCAGTCCAGCAGAGAGGGCAGGTATGCGGGATGGAGAGCTGCTGCTGGAGGTCAATGGAGAGTCAGTGGAGTCCCTGAAGCATGAAGAGATTGTGGACAGAGTGAGACTGAGTGGACAACAGGTCTCCCTCACCACCATCACTCTCCAAGGGCTGGAGTTTTACACCAAGTTGGGTCTTTCACCTGTTCTCTTCTGTGAGGATGGGGATGttgagagagaaaatgagagcAGCATATCAGCCTCTGCAGCTGAGCAGTCACCACAAAAGGAAATAGATGGCTTGTACGAGCCCAGGCACTGTACTCTCCAAAAAGGCCCTTTGGGATTTGGCTTTAACCTGGGCTGTGTTCCACGGAGTCCTGGGACCTTCGTCAGCCAGgTGGCTTTTGGGGGCTCTGGGCAGAGTGCAGGGTTATGTGTGGGGGATGTGCTGATAGAAGTCAATGGACAAAATGTGGAGGAGAAGTACCTGGAGGACGTGATTATGCTTTTGAAGGAAAAAGGAAATTTTCTTTCCTTGCTAGTCATGGATAAGACTGGCTCCAACAAGCAGGAGGAAGACAATTATGAGATATCATTTTTGTGAGCAACGAAGATACTCACACAACTCTGAAGACATTCCCCCATCCCATATGTCTGCTGAAGAGACTTCAAACTGAGCTGAACAAGAAAAACGTTTGCCTGttgttattatgttattattttacTGTCCAATATTTCCTTAATCTAATCCCAGGGTTTCACAAAGGAATGCAAAATACGAAA
>XM_039776705.1
ATGCTATTTGTTTTTCAAGGTTCGGTGGAAATCATGGGGTTGACAAAAAAATATACGTTTAATCCTAAAGAAGGAATAGACAACCCAGTGATGGTCATCACAGAAGACGCAGACTCTGCGTCGACACCCAGCCCACGTCTGTGTGTCCTTAAACGAGAAGAAGGGGAATCTTTTGGCTTCCATCTGCGGGTGGAGAGGGGGCGCCAGGGTCACATAATCAGAAATGTAGTGtcaggaggggtggggggatgCAGTGGCCTTCAAGATGGAGACAGGCTTCTGGAAGTCAACAACTGCTATGTTGACGATGTTCCTCACAATGAGGTGGCTAGGAAGATAAAGCTAAGTGGACACCAGCTATGTTTATTAGTGTTGGATGGGGAGGAGTATGAGCAGGCTGTGTCCCGAGGTGAAGACCTCCGAGGTCTGGCCAGAGCACACACTGGTGAGGGCTGCAAAGCACCCAGACTCTGCCACATCTCCAAAGATCCTGTCTCCGGCCTGGGCATCAACTTCACCCCTCTGGAAGGAGAGAAAGGGCGTTTCTCAGTGAGCCTGGTTACAGGAGGTGCAGCTGAAAAGGCCGGTGTGTGTAAGGGAGATCACCTGGTGTGGATGGATGGAGCAACAGTGTCCAATCTCACGCACTCTGCACTCAGCAGGATGATGAAAAAATGTGGCGATCACATCACTATCCTAGTGATCGACAGTGAGAGTGAGAAGGAATACATGCGACACAGGATGCCCATCCTGCCCACCATGGCTGTTCCACATAACCTTCCCCATAGAGCCAGAAAACTCCACCTGGTGTCTGGGCCGTCGGGGTACGGCTTCCTCCTTCGGCTGGAGAAGGCGCCATCAGGACGCACATTTCATATTCTGCGTGAGATGGACAGTGGCAGTCCAGCAGAGAGGGCAGGTATGCGGGATGGAGAGCTGCTGCTGGAGGTCAATGGAGAGTCAGTGGAGTCCCTGAAGCATGAAGAGATTGTGGACAGAGTGAGACTGAGTGGACAACAGGTCTCCCTCACCACCATCACTCTCCAAGGGCTGGAGTTTTACACCAAGTTGGGTCTTTCACCTGTTCTCTTCTGTGAGGATGGGGATGttgagagagaaaatgagagcAGCATATCAGCCTCTGCAGCTGAGCAGTCACCACAAAAGGAAATAGATGGCTTGTACGAGCCCAGGCACTGTACTCTCCAAAAAGGCCCTTTGGGATTTGGCTTTAACCTGGGCTGTGTTCCACGGAGTCCTGGGACCTTCGTCAGCCAGgTGGCTTTTGGGGGCTCTGGGCAGAGTGCAGGGTTATGTGTGGGGGATGTGCTGATAGAAGTCAATGGACAAAATGTGGAGGAGAAGTACCTGGAGGACGTGATTATGCTTTTGAAGGAAAAAGGAAATTTTCTTTCCTTGCTAGTCATGGATAAGACTGGCTCCAACAAGGAGGAAGACAATTATGAGATATCATTTTTGTGAGCAACGAAGATACTCACACAACTCTGAAGACATTCCCCCATCCCATATGTCTGCTGAAGAGACTTCAAACTGAGCTGAACAAGAAAAACGTTTGCCTGttgttattatgttattattttacTGTCCAATATTTCCTTAATCTAATCCCAGGGTTTCACAAAGGAATGCAAAATACGAAA

Function

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF4

GO: NA

KEGG:

id description
K24059 PDZD3; PDZ domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776704.1 True 1664 mRNA 0.50 10 28811383 28815558
XM_039776705.1 False 1661 mRNA 0.50 10 28811383 28815558

Neighbor

gene id symbol gene type direction distance location
ftr83 LOC104966638,LOC103395195,LOC103359484,LOC102224482 coding downstream 20265 28785102 ~ 28791118 (-)
ruvbl2 ruvbl2 coding downstream 28522 28774813 ~ 28782861 (-)
ankfy1 ankfy1 coding downstream 157899 28635713 ~ 28653484 (-)
zzef1 zzef1 coding downstream 178564 28594424 ~ 28632819 (-)
atp2a3 atp2a3 coding downstream 272255 28475913 ~ 28539128 (-)
ptrh2 ptrh2 coding upstream 60432 28875990 ~ 28877885 (-)
rnft1 rnft1 coding upstream 155910 28971468 ~ 28977378 (-)
cxadr cxadr coding upstream 891649 29707207 ~ 29748583 (-)
btg3 LOC102786047 coding upstream 940169 29755727 ~ 29761675 (-)
c16h21orf91 LOC102786549,LOC102292364,LOC101464061,LOC103361253 coding upstream 991287 29806845 ~ 29826242 (-)
G169551 NA non-coding downstream 49738 28757543 ~ 28761645 (-)
G169550 NA non-coding downstream 55832 28753275 ~ 28755551 (-)
G169524 NA non-coding downstream 106762 28699821 ~ 28704621 (-)
G169447 NA non-coding downstream 412203 28396980 ~ 28399180 (-)
G169417 NA non-coding downstream 454006 28357011 ~ 28357377 (-)
G169612 cltc non-coding upstream 28866 28844424 ~ 28849113 (-)
G169620 cltc non-coding upstream 49923 28865481 ~ 28867088 (-)
G169640 NA non-coding upstream 130752 28946310 ~ 28946656 (-)
G169648 NA non-coding upstream 183922 28999480 ~ 28999737 (-)
G169678 NA non-coding upstream 333526 29149084 ~ 29150478 (-)
atp5l atp5l,LOC102215954 other downstream 2942 28804378 ~ 28808441 (-)
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432,LOC107722775,LOC107712369 other downstream 147332 28654877 ~ 28664051 (-)
LOC120575713 mlxipl other downstream 463893 28314169 ~ 28347490 (-)
srrm3 srrm3,LOC103395181,LOC102790399,LOC102288945 other downstream 498250 28217243 ~ 28313133 (-)
LOC120544668 tspoap1 other downstream 688765 28047607 ~ 28122618 (-)
LOC120544028 LOC107730113 other upstream 946891 29762449 ~ 29796427 (-)
LOC120543707 c2cd2 other upstream 1067248 29882806 ~ 29901937 (-)
map6a map6,LOC102787944,LOC103142112 other upstream 1130110 29945668 ~ 29971080 (-)
ei24 ei24 other upstream 1467522 30283080 ~ 30294530 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other upstream 1491291 30306849 ~ 30341246 (-)

Expression


Co-expression Network