LOC120543589


Basic Information

Item Value
gene id LOC120543589
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27110705 ~ 27116039 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776719.1
CTTCCTGGTTGAATTGAAATCACCCTATGGGAATCACACGTGTAGTGTCTACTGCTCTGTTTTTAACTTTGTTTTGATGCAGCCACACCTTGTTATACGACATTAGCGAGATGTTCGGTTAATACATATCCTTGTGCATCTAAAACGGACTATTAATTGGATGCAACTAACACATTTAGAGCATCTTTTCGTTGGAGGCATCACGCGGATGTAATCTTCTTACTATTTCTTGCCAATGAAGACCTTCTTTAGCTAAGCTATACAATGGCCGGGCTGCCTAATTCTCGAACTCGGACTCAGTCTGATCCCATTGCCGAAGTTGTATCAGCGGAGTCATACCACGCGGTCCTGGACACATCCCCTCCGGACTATGTGGAGAAAATATCGCGGTATCTTGAGTCTTCAGTGGGACACAGCAAACAGGATAAAGTATCTAATGGACCGGCAGAAGCAGAAAGTGACTCAGGAGACAGTCTGTTCTTAACTCAGAAGTCAGTACCTGAGGCTGTGAGATCAAGAAGACGACGCCACTACAGCTTGAGGTCAACCCCCGTATCTCCCAGGGATCTAGAAGAAGAACTGTCTAGAAGTGAAGACAGTCCATCGTCCTCTTCCCACGAAGAATCCAAAACTgacaaagagaggagaagaaagaaatACACACTGCCAAAATACCATTTCCCTTTCCTCGCAAAGCGCAAGTGTAAGCTCAGAAACACTCTGTTAGCTGTCCAGAACACAAGCCTTCATCATTATGTGATGGGAGGCTTCTTTAACTGTGTCAGAGAGCTGTGGCAGGGCTATCAAAGAGAGCATCTGGAATCATCTTTACCAACAGTTGACATGGATGGGCAGGACCTATCTCCACTGTCAGAAGAAGACGAAGAGAGGTCAgaagatgaagacatgaaagtggtGGAGAGGAAACGTTTTGTGGCACCATCAAAAGCAAAGAGCCAACAAACCTGGTGCAAGCAGTTAAAacaacagaggaggaggaaagctAGTGATGCCAGACAAGAAACATCACGAGGAAGACGAACAAAGGTCATACCAGTGTCTTCAGATACAGAGACCCCTGATCATGGGGAGTCTTCTTGCAGAGTTCGGGGCCAGAGGGAGAGGGATGATGAGCACGCAACAAGTGACGGAAACTCTACCGCGCAAAATAAAACCCCAAAGACAAAGAGACGCCTCACCCGAGGAAACAAAGCGAGCGAGGAAGAGCTGTGCAACGACAACGATGCTGCCATTTGTGAGCCGCGAAAGCCGCAGAGAAGGCACTCCACTCGAAAGGGCAGAGAAGCATCCACCGCAGTAACAGAGCCTCAAACTGGTGGTTCCCACGTAGAAGATCTGTTCCAGGCAGGACAGGCCGGGGACGGACCTGAAAGCCCAAATCTCCTCCCCGGTCCCTCAGGTCTTATAAGTGACACGAATAATAATGACAGCATATGCAATGAAACCAAGgtaaaaaagaggaaaaagaagaaaaagggacATCGTGAAAGTGTAGACGAAGGAAAGAGCCAGAGTCGGGACGAGCCAGAGGGTCTGCATGCTGCAGCGTCTGTGAACACGGAGGTAGAAGAGACCCCCAGCCTGTCTGAGGATAATAGGGCAGAGACTCCTGCAGCGCAGACTAGTGAGCAGCTGGAATTGAATGAAAACACTGGGATGGAGAACGAGTCCCGTGATGATAAAATACtgagacaggaggagagagacatgCCCGATTCAAAAcacaagaggaagaagagaaaaaagaataaGTCTTCAGCAGATGTTAGGCAGGAAGTTGATGAAAACTTCGAGTCTGATGTGAGAGCGGAGGATTCTGTATTTTCAGTGAGCTGTAACATGGAGGATGGTGGcaaggaggagaaaaagaagaagaagaagaaaaagaggagaagCTGTGAGGATGTTGAGCATTTACAGTCTGGCGCCGTTGCCGAACCCCTAAATGACGATGCTGAGAAacggaagaagaaaaaaaggaaaaaagtaaAGGGGCTTGTAATTACAGAGCaatgtgaggaggaggaggcggcatCGAATAGGACTTTAGATTCGCCGCCAACGTCAACAGAACAGTTAGAGGAATCAGGGAATTGTTTGGAAAATGCCGCAGCTTCTCAAGAAACCTCCGAGTCCAGTTATGTCAAAAggaaaaagcacaaaaagaAGCGACCGTCCTCGTCTAATGATGCTTCTCAAGATGGAGAAGAGGGTGTGGATGTGAGCTTTTGTATGGATGATTCTGTAACTTTAGCTAAAGGTTCAGGGCAGTCtctgaaaaagaagaagaaaactatCTTTGAGGGGCTACATATCTCTTACACTCCTGAAGAAAAtccaaaaaatgtaaatgatacCCAGAATACAAAGGAGGGCCTTGAAGCTCAAAATGCTGAACTGGTGactaagaaaaagaaaattggtaAAATATTGAGCAGGAACGTATCCGAAGACACAGTGGCGCAAAGCGACGATTCTGTGTCCGTgcaggaaaaggaaaagaagaggaCCTCGTCCTTCCTCGTTGCTGACGCAGAGGAAAACGAGGCGCAGGCACATGGGGAACAAAACTGTGGTGTCTGGGGAGCAGAAAACCCCGTCGTCAGCGCTGGTGACTTGGAGCAACTTAATGATTGGGTCacgaagaggaagaggaagatgtCGGTAGAGCAGCACAGTGTGGATTTCGAGTATCCAAACGAAACATGTCCGAGTGCTTTGCTTGAACTCACTGACACGGGgttgaaaaggaaaaagaaacgGACGGGAAATGAAAGTAGGTCAGTAACCCCCACGGAATTATTGGAAAGTACAGCTGACGCGGGACTTTCTCCAGCTGAAGAGGCTGTGGTGtcgaaaaagaagaagaagaagaagaagaagaagaagtgcaAAGACGAGCCATGCCCCTTGATACCAGAGGGTCCTCCATCTGCCACTGAAGATGCTGAATCACTTAGATCTACACTGAACACCTGTGGCCCAGTTTCTCACGAGAAAAAAGGCAAACACGGTCGCAGTGCTGAAACGCCTCATGATAGCAGTGCTTGTGACCAGGCGACCAAGGAAACTCTGAATCTGGTCGAACGTGCTTCAGCATCTCCGGAGACACTTGAAAATCAGGCATTAAATGATACGGCCgtcaagaaaaagaagaaaaaaatgaaatccacCGATAATGTTTTGCTCGAGGGGAAATCGTTGGCCGAGTCTGCTGAGTTAGGGcccagacaaaacaaaaagaaggaaagaaatgaGCAATCAGCTGTCCCCAGTATCATATTCAGCAGCCCCGTCGTATCTGAGACGTCGCTCTCAAAATTGGAAATGTCGTCTTCAGACAATATCATGAAAACCAAGCAAAGAAAGGTCAAGCGGAGACTGCTTAATCCAAGTGAGGACTTCCTTACAGACTGCTAGTATGAagttgctgattggctgaatTGCAGATGGATaaataactaactaaaatgATGCCCTCTATCTTTTTTTCGATGGATTGAGTGAAAAAGGGACAGTTCAGTtttgaatgtattttgttttgtatcaAAGCATTTTACTGACAAagttctcaacctttttggtGTTGAGACGGACTGAGAAAAATAACGACGCACCATAATGattagtttttctttctttttgtaatAAAGCTCCTGAATTTGAACAGTATTTGAAGGACCATGTCACAAGTTTATAAATTAAAACTACATTAAATGAGTGTAATCAA

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776719.1 True 3751 mRNA 0.46 5 27110705 27116039

Neighbor

gene id symbol gene type direction distance location
LOC120544222 NA coding upstream 135215 26971320 ~ 26975490 (+)
cnih2 cnih2,LOC100706298,LOC107091387,LOC108276897 coding upstream 327381 26771198 ~ 26783324 (+)
prdx5 NA coding upstream 429553 26677283 ~ 26681152 (+)
LOC120544052 kcnk4,LOC101470327,LOC104926336 coding upstream 456762 26640316 ~ 26653943 (+)
adssl LOC103133900,LOC102196784,LOC102782943,LOC103363363,LOC107082552,LOC100708095 coding upstream 472531 26626662 ~ 26638174 (+)
aspa aspa coding downstream 1172 27117211 ~ 27131295 (+)
abr abr,LOC103375456 coding downstream 19978 27136017 ~ 27288433 (+)
trnav-aac_10 NA coding downstream 163610 27279649 ~ 27279721 (+)
cenpv cenpv coding downstream 181998 27298037 ~ 27301502 (+)
ncor1 ncor1 coding downstream 198515 27314554 ~ 27373600 (+)
G169060 NA non-coding upstream 29044 27038854 ~ 27081661 (+)
G169027 NA non-coding upstream 150066 26957695 ~ 26960639 (+)
G169018 NA non-coding upstream 271148 26838992 ~ 26839557 (+)
G169011 LOC108233807,LOC100703904,LOC106511527,LOC101466262 non-coding upstream 281021 26827103 ~ 26829684 (+)
G169010 LOC106511527,LOC107091377,LOC100703904,LOC107386668,LOC101466262,LOC108233807 non-coding upstream 283655 26824603 ~ 26827050 (+)
G169095 ubb,ubc,LOC107553588 non-coding downstream 175906 27291945 ~ 27297777 (+)
G169157 NA non-coding downstream 309114 27425153 ~ 27426322 (+)
LOC120543667 NA non-coding downstream 360246 27476285 ~ 27477131 (+)
G169209 LOC107090330,LOC102785725,LOC102220786 non-coding downstream 584079 27700118 ~ 27701522 (+)
G169215 NA non-coding downstream 597036 27713075 ~ 27713796 (+)
G169042 stip1 other upstream 145665 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 423442 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 434910 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 542205 26543796 ~ 26568500 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other upstream 887260 26000063 ~ 26223445 (+)
shpk shpk,LOC102781293 other downstream 403992 27520031 ~ 27531315 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 1680473 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 1765695 28881734 ~ 28942332 (+)
G169789 map6 other downstream 2829835 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 2895294 30011333 ~ 30113690 (+)

Expression


Co-expression Network