stt3a (stt3a)


Basic Information

Item Value
gene id stt3a
gene name stt3a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30267597 ~ 30282064 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777454.1
atgtccaaaatggGCTTCCTCCGTTTGTCCTATGAGAAACAGGACACGCTGCTGAAGCTGCTCATCCTGTCTATGGCTGCCATCCTCTcGTTCTCCACCAGACTCTTTTCCGTCTTGAGGTTCGAAAGCGTCATCCACGAGTTTGATCCGTACTTTAACTACCGTACCACCCGCTTCCTGGCAGAAGAAGGATTTTATAAGTTTCACAACTGGTTTGACGACCGGGCATGGTATCCTCTGGGGAGGATCATCGGTGGCACCATTTATCCAGGACTGATGATCACCTCTGCTGTCCTGTACCACACCCTACATTTCTTCCACATCACCATTGACATCCGTAATGTCTGTGTCTTCCTGGctcccctcttctcctccttcacTGCCATAGTCACCTACCACTTCACCAAGGAGTTGAAGGATGCAGGCGCTGGGCTCCTGGCTGCTGCCATGATTGCAGTGGTGCCTGGTTATATCTCTCGCTCTGTTGCTGGCTCCTATGATAACGAAGGTATTGCCATCTTCTGCATGCTGTTGACCTATTACATGTGGATCAAGGCTGTGAAAACGGGCTCGGTGTACTGGTCGTCCATGTGTGCACTGGCCTACTTCTACATGGTTTCTTCCTGGGGTGGCTACGTGTTCCTGATCAACCTCATCCCCCTCCACGTGCTGGTTCTGATGCTCACGGGCCGATTCTCTCACCGAATCTATGTGGCTTACTGCACAGTCTACTGCCTGGGCACCATCCTCTCCATGCAGATCTCTTTTGTTGGTTTCCAGCCGGTGCAGTCATCGGAGCACATGGCAGCCTTCGGTGTGTTTGGCTTGTGCCAGATTCACGCCTTTGTGGACTACCTGCGCAGCAAACTCAGCGCCCAGCAATTTGAAGTGCTGTTCAAGAGCGTCATCTCCCTGGTGGGCTTCATGCTGCTGTCAGTGGGCACTGTTCTCATGCTGACCGGTAAGATCTCTCCATGGACCGGTCGTTTCTACTCCCTGCTGGATCCCTCCTATGCCAAGAACAACATCCCCATCATCGCCTCCGTCTCTGAGCACCAGCCCACAACCTGGTCCTCGTACTACTTTGACCTGCAGCTGCTGGTCTTCATGTTCCCAGTTGGTCTTTACTACTGTTTCAACAACCTGTCTGACGCCAGGATCTTCATCATCATGTATGGAGTCACCAGCATGTACTTCTCAGCTGTCATGGTGCGTCTGATGTTGGTTCTGGCTCCGGTCATGTGCATCCTGTCAGGCATCGGTGTGTCCCAGGTGCTAACCACTTACATGAAGAATTTGGATGTCAGCAGGCCAGACAAGAAGAGCAAGAAGCAGCAGGACGCCACCTACCCCATCAAAAATGAGGTTGCCAGCGGGATGATTCTGGTCATGGCCTTCTTCCTCATCACATACACCTTCCACTCGACCTGGGTGACCAGCGAAGCCTACTCCTCTCCCTCCATCGTCCTGTCGGCCCGCGGCGGTGATGGCAGCCGGATCATCTTCGACGACTTCAGAGAGGCCTACTACTGGCTCCGCCACAACACTCCTGAGGATGCCAAAGTCATGTCATGGTGGGATTATGGCTATCAGATAACCGCCATGGCAAATCGAACCATTCTAGTGGACAACAACACGtggaacaacacacacatctccAGAGTTGGACAGGCCATGGCGTCCACAGAAGAGAGGGCCTATGAGATCATGAGGGAGCTGGATGTCAGTTACGTCCTGGTCATCTTTGGAGGACTGACGGGCTATTCCTCAGATGACATCAACAAGTTTCTGTGGATGGTCCGTATCGGGGGAAGCACGGACACGGGCAAACACATCAAGGAGCACGACTACTACACTCCCACCGGAGAGTTCCGAGTGGACCGCGAGGGCTCGCCTGTCCTGCTCAACTGCCTCATGTACAAGATGTGCTACTACCGCTTCGGCCAGGTCTACACAGAGGCCAAGCGCCCACCTGGTTATGATAGAGTGAGGAACGCTGAGATCGGGAACAAAGACTTTGAGCTGGATGTGTTGGAGGAGGCCTACACAACAGAGCACTGGCTGGTTAGGATATACAAGgtcAAAGATCTGGACAACCGGGGTCTTTCAAGGACATAAAACCTTCAGACGGCGGTGAAAACAGCCTTTTCGCACACAGCACTGAACACCTTCCCCTGTGGTCTGCagatgagagagacagagagagagaagagtacttttttatacttttgtttggtggggggggggacaaaatTGCATCAAagagattttgtttttgtgaatgaattttttttcttttttattttgttataatgaAATGTCTCATCTGGGATCAGAGGGAGCTGGTGTCAAAACGTCCAGTCCGTCAGGAAGCGTACTGTAATTCGCCACGAAGCAAAAGCCGTGGTCATTTATGAGCGCTTTGGGTTTTTACAATGTGGTCAATTAAAGTGGGATTAAACGTGATCAAATA
>XM_039777455.1
GTGGGATTACTGTCGACTGACGTTTAACCAATAAACACGCAGCGTGGCGTGGTTGGGGAGGGACTCGGTCACGGTGAAGGTTGTGTGTGAATAGTGTGAGTAACAGGAACGGAGCGGGTAGTACGGTGAGCTGTCCTAACCTcgccaaaatgtccaaaatggGCTTCCTCCGTTTGTCCTATGAGAAACAGGACACGCTGCTGAAGCTGCTCATCCTGTCTATGGCTGCCATCCTCTcGTTCTCCACCAGACTCTTTTCCGTCTTGAGGTTCGAAAGCGTCATCCACGAGTTTGATCCGTACTTTAACTACCGTACCACCCGCTTCCTGGCAGAAGAAGGATTTTATAAGTTTCACAACTGGTTTGACGACCGGGCATGGTATCCTCTGGGGAGGATCATCGGTGGCACCATTTATCCAGGACTGATGATCACCTCTGCTGTCCTGTACCACACCCTACATTTCTTCCACATCACCATTGACATCCGTAATGTCTGTGTCTTCCTGGctcccctcttctcctccttcacTGCCATAGTCACCTACCACTTCACCAAGGAGTTGAAGGATGCAGGCGCTGGGCTCCTGGCTGCTGCCATGATTGCAGTGGTGCCTGGTTATATCTCTCGCTCTGTTGCTGGCTCCTATGATAACGAAGGTATTGCCATCTTCTGCATGCTGTTGACCTATTACATGTGGATCAAGGCTGTGAAAACGGGCTCGGTGTACTGGTCGTCCATGTGTGCACTGGCCTACTTCTACATGGTTTCTTCCTGGGGTGGCTACGTGTTCCTGATCAACCTCATCCCCCTCCACGTGCTGGTTCTGATGCTCACGGGCCGATTCTCTCACCGAATCTATGTGGCTTACTGCACAGTCTACTGCCTGGGCACCATCCTCTCCATGCAGATCTCTTTTGTTGGTTTCCAGCCGGTGCAGTCATCGGAGCACATGGCAGCCTTCGGTGTGTTTGGCTTGTGCCAGATTCACGCCTTTGTGGACTACCTGCGCAGCAAACTCAGCGCCCAGCAATTTGAAGTGCTGTTCAAGAGCGTCATCTCCCTGGTGGGCTTCATGCTGCTGTCAGTGGGCACTGTTCTCATGCTGACCGGTAAGATCTCTCCATGGACCGGTCGTTTCTACTCCCTGCTGGATCCCTCCTATGCCAAGAACAACATCCCCATCATCGCCTCCGTCTCTGAGCACCAGCCCACAACCTGGTCCTCGTACTACTTTGACCTGCAGCTGCTGGTCTTCATGTTCCCAGTTGGTCTTTACTACTGTTTCAACAACCTGTCTGACGCCAGGATCTTCATCATCATGTATGGAGTCACCAGCATGTACTTCTCAGCTGTCATGGTGCGTCTGATGTTGGTTCTGGCTCCGGTCATGTGCATCCTGTCAGGCATCGGTGTGTCCCAGGTGCTAACCACTTACATGAAGAATTTGGATGTCAGCAGGCCAGACAAGAAGAGCAAGAAGCAGCAGGACGCCACCTACCCCATCAAAAATGAGGTTGCCAGCGGGATGATTCTGGTCATGGCCTTCTTCCTCATCACATACACCTTCCACTCGACCTGGGTGACCAGCGAAGCCTACTCCTCTCCCTCCATCGTCCTGTCGGCCCGCGGCGGTGATGGCAGCCGGATCATCTTCGACGACTTCAGAGAGGCCTACTACTGGCTCCGCCACAACACTCCTGAGGATGCCAAAGTCATGTCATGGTGGGATTATGGCTATCAGATAACCGCCATGGCAAATCGAACCATTCTAGTGGACAACAACACGtggaacaacacacacatctccAGAGTTGGACAGGCCATGGCGTCCACAGAAGAGAGGGCCTATGAGATCATGAGGGAGCTGGATGTCAGTTACGTCCTGGTCATCTTTGGAGGACTGACGGGCTATTCCTCAGATGACATCAACAAGTTTCTGTGGATGGTCCGTATCGGGGGAAGCACGGACACGGGCAAACACATCAAGGAGCACGACTACTACACTCCCACCGGAGAGTTCCGAGTGGACCGCGAGGGCTCGCCTGTCCTGCTCAACTGCCTCATGTACAAGATGTGCTACTACCGCTTCGGCCAGGTCTACACAGAGGCCAAGCGCCCACCTGGTTATGATAGAGTGAGGAACGCTGAGATCGGGAACAAAGACTTTGAGCTGGATGTGTTGGAGGAGGCCTACACAACAGAGCACTGGCTGGTTAGGATATACAAGgtcAAAGATCTGGACAACCGGGGTCTTTCAAGGACATAA

Function

symbol description
stt3a Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial mesoderm; hatching gland; musculature system; notochord; and otic placode. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iw. Orthologous to human STT3A (STT3 oligosaccharyltransferase complex catalytic subunit A).

NR:

description
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0004576 oligosaccharyl transferase activity molecular_function

KEGG:

id description
K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777454.1 True 2473 mRNA 0.51 17 30267597 30281116
XM_039777455.1 False 2267 mRNA 0.53 18 30267952 30282064

Neighbor

gene id symbol gene type direction distance location
thap12a NA coding downstream 6403 30256061 ~ 30261194 (-)
si:dkey-250d21.1 LOC103363043,LOC104956247 coding downstream 13247 30239106 ~ 30254350 (-)
wnt11 wnt11 coding downstream 39432 30214539 ~ 30228165 (-)
LOC120544725 LOC794378,LOC106676715 coding downstream 344085 29920887 ~ 29923512 (-)
zbtb21 zbtb21 coding downstream 354930 29904528 ~ 29912667 (-)
dscama NA coding upstream 228660 30510724 ~ 30624394 (-)
tmprss2 LOC104945283 coding upstream 395035 30677099 ~ 30683688 (-)
acat1 acat1 coding upstream 406362 30688426 ~ 30696741 (-)
mmp30 NA coding upstream 415302 30697366 ~ 30701630 (-)
LOC120575605 LOC104951202 coding upstream 420436 30702500 ~ 30709341 (-)
G169912 LOC103363040,LOC108244715 non-coding downstream 1163 30264550 ~ 30266434 (-)
G169905 NA non-coding downstream 152178 30046141 ~ 30115419 (-)
LOC120544726 NA non-coding downstream 341144 29925067 ~ 29926453 (-)
G169766 NA non-coding downstream 478047 29778692 ~ 29789550 (-)
LOC120544741 NA non-coding downstream 588732 29668382 ~ 29678865 (-)
G169927 NA non-coding upstream 69809 30351873 ~ 30365637 (-)
G169928 NA non-coding upstream 105790 30387854 ~ 30388055 (-)
G169941 NA non-coding upstream 146784 30428848 ~ 30429056 (-)
G169956 NA non-coding upstream 168483 30450547 ~ 30452506 (-)
G170054 NA non-coding upstream 446938 30729002 ~ 30731888 (-)
map6a map6,LOC102787944,LOC103142112 other downstream 296517 29945668 ~ 29971080 (-)
LOC120543707 c2cd2 other downstream 365660 29882806 ~ 29901937 (-)
LOC120544028 LOC107730113 other downstream 471170 29762449 ~ 29796427 (-)
atp5l atp5l,LOC102215954 other downstream 1459156 28804378 ~ 28808441 (-)
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432,LOC107722775,LOC107712369 other downstream 1603546 28654877 ~ 28664051 (-)
ei24 ei24 other upstream 1016 30283080 ~ 30294530 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other upstream 24785 30306849 ~ 30341246 (-)
si:ch73-1a9.3 NA other upstream 129165 30411229 ~ 30414735 (-)
LOC120575604 NA other upstream 436151 30718215 ~ 30732082 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other upstream 455501 30737565 ~ 30830309 (-)

Expression


Co-expression Network