tmprss2 (LOC104945283)


Basic Information

Item Value
gene id tmprss2
gene name LOC104945283
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 30677099 ~ 30683688 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777675.1
TGATTACATGGAAGAATGGGCAGAACACAaggcaaagagagaaagagggagccGGAGAACGGACAGAATCAGAGTGCTGAAGGAATTTGTGGGAATTTCAAGgttCGACAGTCTCCCTCCACAGGCAGTGTAACCGGTTTCAATATGAATAAGAATCCGGTAAATGATCCCACCTATGACAACATGGGGTTTCAGCATGAGGAAGGGAGACCGCATTCAAATGCCCCACAACAGGGTATATACCCTTTCCTCCCACAGGAGACCCGCAGCTATGTTGCTGTCAGTCCCAAAACCATCAATACCCACCACACTGCGACACCTGGAACACCACATAACATAGGACAAAGGAAAGGAATAAAGAAATGTCAGTGGAAATATATACtgtgtgcatctctgtgtgtgcttcTCATCCTGGCGATGGCCAGCCTCTTGCTCTGGTACTTCTtaTACTACCAGTGTTTACTGGGGAAGTCGTGTAGAAGTGGTGGGAAGTGTTTAAGCTCGTCCCAGTGGTGCGATGGTGTAATGGACTGTTCTCACGGAGAGGATGAATCTCAGTGCTTTCGCCTCCACGGGAGCAACTTCATGCTGGAAACCTACTCATCTGATAGCCAGACGTGGATGCCGGTGTGTGCTGAAAACTGGGACAACAACTATGGGAGAGCTGTGTGTGAGCACATAGGGTACAAGAGACAGGATTATGTGTCCTACACCCAAACCAGTGCAGGTTCTTTGGCCTCCAGGGGATACATGAAGCTGAAGGCTGAAAGTAGCCATGGATCACGTATACAGTCACAGCTCACTTACAGCCAAAGTTGCTCAGCCAGAGCAGTCAAACTTCATTGTATTGAATGTGGAGTGAGTTCAGCAGCCCCCAGTGCTCGTATTGTGGGTGGTACGGCGGCAGTGAAAGGGGCCTGGCCGTGGCAGGTCAGTCTCCAGATTCAGCATCGACACACATGTGGAGGCTCCATTATCAGCCCTTACTGGATCCTATCTGCTGCACACTGCTTTGAAACGTACTCACATCCTGGACTCTGGAGGGTGTACTATGGTGACGTGAGCTTGTTTCAGATGAGCTTGGGCTCCGGCAAAACAGTTAGCAAAATTATCAGTCATGACAAATTCGACAAACGCACTAATGACCATGACATTGCTCTCCTAAAGCTCGATACACCTCTGACATTTACAAGAACAGTGAAGCCTGTGTGTCTCCCCAACATTGGCTTGGGCCTCTCTGCTGGACATCAAGCATGGATCACAGGATGGGGAGCCTTGCGCTCATCTGGACCATCCCCTGACAGACTAAATCAGGCCCAGGTGACCGTTTACAGCAGAGAGATCTGTAACAGACCTGAGGTGTTAAATGGAGAAATCAGTGAGACCATGATCTGTGCCGGAAAACTGCAGGGAGGAGTCGACTCATGTCAAGGCGACAGTGGAGGGCCCCTGGTGGTCAAGGAGGGAGATGTATGGTGGCTGGCAGGGGACACTAGCTGGGGAATTGGATGTGCTTTGAGGAACAAGCCAGGAGTCTACGGCAATGTTACCTACTTTATCCACTGGGTATATGAACAAATGCAGAACGAGTGACAGAGTTCTCAGTAAACCTTAACTCAAACCTCTGTCTTTAATCAGCAGTACTTACTTTATGACACACTTTGCACTTTGAATCTGAAGCTCTGAGGAAACGTAATCATGGGGAggatataaaaaacaaaaagattgTACAAATTTAAACTGATgtatgatttcattttttttatattcttgtTATTAATACAGATTGAATGTTTGTATTTGACCAAAATCAAGCTATTTATTTGttgtaataaaacacattttgcacAAAGAA

Function

NR:

description
transmembrane protease serine 2-like isoform X1

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K09633 TMPRSS2; transmembrane protease serine 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777675.1 True 1855 mRNA 0.47 14 30677099 30683688

Neighbor

gene id symbol gene type direction distance location
dscama NA coding downstream 52705 30510724 ~ 30624394 (-)
stt3a stt3a coding downstream 395035 30267597 ~ 30282064 (-)
thap12a NA coding downstream 415905 30256061 ~ 30261194 (-)
si:dkey-250d21.1 LOC103363043,LOC104956247 coding downstream 422749 30239106 ~ 30254350 (-)
wnt11 wnt11 coding downstream 448934 30214539 ~ 30228165 (-)
acat1 acat1 coding upstream 4738 30688426 ~ 30696741 (-)
mmp30 NA coding upstream 13678 30697366 ~ 30701630 (-)
LOC120575605 LOC104951202 coding upstream 18812 30702500 ~ 30709341 (-)
LOC120543889 NA coding upstream 169868 30853556 ~ 30857220 (-)
LOC120543607 NA coding upstream 175913 30859601 ~ 30875760 (-)
G169956 NA non-coding downstream 224593 30450547 ~ 30452506 (-)
G169941 NA non-coding downstream 248043 30428848 ~ 30429056 (-)
G169928 NA non-coding downstream 289044 30387854 ~ 30388055 (-)
G169927 NA non-coding downstream 311462 30351873 ~ 30365637 (-)
G169912 LOC103363040,LOC108244715 non-coding downstream 410665 30264550 ~ 30266434 (-)
G170054 NA non-coding upstream 45314 30729002 ~ 30731888 (-)
LOC120543896 NA non-coding upstream 104781 30788469 ~ 30791876 (-)
G170078 NA non-coding upstream 204318 30888006 ~ 30889575 (-)
G170085 NA non-coding upstream 230014 30913702 ~ 30914239 (-)
G170092 NA non-coding upstream 253218 30936906 ~ 30937273 (-)
si:ch73-1a9.3 NA other downstream 262364 30411229 ~ 30414735 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other downstream 335853 30306849 ~ 30341246 (-)
ei24 ei24 other downstream 382569 30283080 ~ 30294530 (-)
map6a map6,LOC102787944,LOC103142112 other downstream 706019 29945668 ~ 29971080 (-)
LOC120543707 c2cd2 other downstream 775162 29882806 ~ 29901937 (-)
LOC120575604 NA other upstream 34527 30718215 ~ 30732082 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other upstream 53877 30737565 ~ 30830309 (-)
LOC120543892 LOC103394800 other upstream 163310 30846998 ~ 30851054 (-)
G170098 NA other upstream 273813 30957501 ~ 30958498 (-)
G170463 NA other upstream 1518021 32201709 ~ 32202206 (-)

Expression


Co-expression Network