hlcs (hlcs,LOC102212994,LOC105419148)


Basic Information

Item Value
gene id hlcs
gene name hlcs,LOC102212994,LOC105419148
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31430440 ~ 31476434 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777858.1
ACCCGCTTTTTAAATACATAGGCGAAATGTCGTAGCAATTAGCTTGACAGTTCGGCGGTAATGTTGTGACCGCTGTGAACGTCAATTTACATGGCATTAAAATACGGCCACGATGGCACTCTTCGTGTATGCCGGTTAAGATGTTAATAACATTGTGCTACGTCTATCTGTGGGTGCGCTTTCACAAGTGCTACTCGGTGCTGATCCGCAACAGCCTGTCCAGACTGAACAGCAGCACCTTCGGCTTCAGCTTCAGAGTGTGCTCCAGCCCGGCCTCAGCACCAAGCGCAGCATCGCCGACTGAACGCCACACAGCCGCCGCCGCACCCAGGCAGCCCAGCCCGGTCCCACTCGAGGACAGCGTCTTCCTTCAGCTGGGAGACAAAGCTGTCTATGTCACGGAGCCTCAGGCATGTGATGACCTCAGCAAATGGACTGTGCTGTTGGGGTCCTCTCTGGTTTGTGGTCCACGAATAGAGAATATTTCATTCATCATAGAAGCTACAGGACACAGAGTGGGCTACCATTCTCCTCACACATCGAATAAGAAAgTGCTGAAGTGGTCTGACTACTGTCTTCCTCTGGCCTGTAGCCCTGGCCAGCCATTCCGGGCTGTAGCTCAGGCCAGCATAGACAACTTCAGTCGACTGGGGGTGGCTTTTATCGAGGATCGCCTTCAGCTGGACAATGGACTTCTGCCTTCAAAGATAATCCCTGTCCTCCTCCAAGAATCCACTCTCAGTGAGCTGTTGGAGAAGCAGTGTCCAAAGACTGAGACGTCATCACATTGGCTCTGTGGCCCCCAGCCTGGAGAGGGTGTTGCTGAGCCTTTGCGTTGTCGGCTGTCACCCAATCACCAGCGCCTCCAGTGCCGTAAGGGCAGCCTCCTCCTCACCCCGGAGCTAAAGAGGAGGTTAGAGGAGCGGCGAGGGTCCGAGCCGCTCCGTGGCACCAAGGATCCGGGAGCTGCTTGTGACTCGGAGGACCATTCCCTGGGAAGTCATCACCACATGGAGGGCCACAAACACCACCTCCATCTGTCCAGCTGCCACGAATGCTTGGAGCTGGAGAACAGCACCATCCTCTCTGTCAAATATGCCTCCGCTGAGAACATTCCAGACCTTCCCGATGACAACTCAGTCGGGCTAGATAGTGGAGATGAGACTCTGGATGATGTTGAGCATGATGCCAAAGGGTTTTCTGGGCAAAGTGGTGGATTTGACTGTAAAAGCAAACCGCCAAATATTCTGCTGTACACGGGTGGTTGCCAGGAGCGTTTTGAGGCACTTCGCCAGCTTTTATCGGAGTGTATAAACATGGAAAACAACATAATATATCCGCTCCAACCCCAGCAGGCTCTGAGCGACCCTTGGCTGGACAACACCAGGCTCCTGGTACTGGCAGAGAAGGAAACCCTCACCCCCCAACTTCAGACCCGTTTCCTTACCTACCTGAGCCAGGGTGGCAGGGTCCTGGGGCTAGCCTCCACCCTGTGCCCGGCGGGCCTCTGTCTGAAACTCAGGGAGAGGCAGCGTGGGAAGGTCAGCAGGCTGAGCTTCACCAGGGAGGACAGCACCGAGCTGGAACTGAGCGTGTTGGCGAGCGGGATGGTCTACGTCAGGGATACTCAGGGAGGAGGGGAAGTGGAGCTCTGGGGGGAGCTGAAAGGGGACAGCCCTCATCAGAGGGATATGGTTGTAGTCAGGGTAACCCACCGAGGGGATGACGGCGAAGCTGTCCTCTGTCAGGCCCACCTGGAAATCGCTCCCGACTCGCAGAATTTGACATCGGAAGGATTCGATGAACTGAAGGTCAGCAATGCGCTGCGTTATGAAGTCCTGACAGAGATCCTCACCTCGCTGGGCCTCAGCTGTGAGCGAAACCAGACTCCAGCCCCAAGCCCGGTCCACCTGCTTGCCACCTCCCAGGAGACCAAGGCCATCTTCCTGAATTGGCTGCGGACACGTGCAGATCAAAATGGCCTCCTCACATTGTCCAAGGCCTCCCTCAGGATGCTGTCCTCTTCTGAGCTCCAGGATGGTCCTTCGCTGCCTGAGGGCTCTCTGGCCCTGGTCACCAACTCTTCAGAGTCCCAGAGCTGGCCGCACTTCAGTATGGAAACCTATAGCAAGAACCTGAAGACCAGCCTGCTGGGGCATACCGTGCTGTACGCTGAGGTGGTCACGTCTACCATGGACCTGCTACAAGGgCTGACTCTGCACTTACCAAAGGATGTGGGATTAATAGCAGTAGCTGCTCGACAAAGCCAGGGCAGAGGTCGGGGCGGGAACGCCTGGCTCAGCCCCCTAGGGTGTGCCATGTTCACCCTGTCGGTCCAGGTTGAGCTGAGCTCCAGGCTCGGACAGAGGATTCCCTTCCTGCAGCATCTGGCTGCTCTGGCCGTGGTGGAGGCTGTTCGCACGCTTCCTGGATACGAGGACATAGACCTGAGGGTGAAGTGGCCCAATGACATCTATTACAGTGACCTGATGAAGCTCGGGGGAGTACTGGTGACTTCCACTGTACTGGGATCAACTTTTCATCTGCTCATAGGCTGTGGGTTCAACGTGGCAAACAGCAACCCGACCGTGTGTATCAATGACCTGATCCAGCAGTACAACACGGAGCATAACTGCAGCCTGCAGCCGCTCGGCTGCGCCCAGCTCATCGCTCGCTCTGTCAACTGCCTGGAGACGCTCATCAGCAGCTTCCAACAAGGGGGCCCGGACGCCGTCCTGCCCACCTACTACAAGAGGTGGCTGCACAGCGGGACCCGGGTGCATCTCTGGAGCGAGGACGGACTGGAGGCTGAGGTGGTGGGTCTGGACAGCAACGGCTTCCTCCAAGTGTACAACAGGGAGCAAGGCACGGTCTCAGTGGAGCCTGATGGGAACTCCTTCGACATGCTGAAGAACCTGGTGGTCATCAAGAAGCATTAGGACCAAATTCAGCAAAATACAGAATCATCGTCTCTTTCAGCGGACTGAACCAATAACAGTAACTGACAGAAAACTTGATCTAACTATATAAATGTATCAGGGTTTTCTAATTGGTTAACACATAGCTGAATATGTTGCTGGTTTACAGTGGGAGTACAGGTTAGCATCTCCTTATGTTAACCTGACATACAGTTTACATATTTGAAGTAGTTTGGGGTTATTTGTGGGAAGACATCCAGTGATGGTAACTGGGTTTAAAGGCAGCGAGTAGCACGTGCATCAGTGATGGGTCACTAGCACATCCATCCCTTAGGTTATGACCTGCTGATTTGGGACCACCAGTTCAAACCATCACCTAACAACGTGCACTACTTTGTGGGAGCAGTACGTCTTGTACACCTCATCCAAACAGCTAACCTGAACAGGGATCATTGCAGCTTTTTGCTGTTGCAAAAATAATAAAGATTTCCACAGAAAAA
>XM_039777859.1
ACCCGCTTTTTAAATACATAGGCGAAATGTCGTAGCAATTAGCTTGACAGTTCGGCGGTAATGTTGTGACCGCTGTGAACGTCAATTTACATGGCATTAAAATACGGCCACGATGGCACTCTTCGTGTATGCCGGTTAAGATGTTAATAACATTGTGCTACGTCTATCTGTGGGTGCGCTTTCACAAGTGCTACTCGGTGCTGATCCGCAACAGCCTGTCCAGACTGAACAGCAGCACCTTCGGCTTCAGCTTCAGAGTGTGCTCCAGCCCGGCCTCAGCACCAAGCGCAGCATCGCCGACTGAACGCCACACAGCCGCCGCCGCACCCAGGCAGCCCAGCCCGGTCCCACTCGAGGACAGCGTCTTCCTTCAGCTGGGAGACAAAGCTGTCTATGTCACGGAGCCTCAGgTGCTGAAGTGGTCTGACTACTGTCTTCCTCTGGCCTGTAGCCCTGGCCAGCCATTCCGGGCTGTAGCTCAGGCCAGCATAGACAACTTCAGTCGACTGGGGGTGGCTTTTATCGAGGATCGCCTTCAGCTGGACAATGGACTTCTGCCTTCAAAGATAATCCCTGTCCTCCTCCAAGAATCCACTCTCAGTGAGCTGTTGGAGAAGCAGTGTCCAAAGACTGAGACGTCATCACATTGGCTCTGTGGCCCCCAGCCTGGAGAGGGTGTTGCTGAGCCTTTGCGTTGTCGGCTGTCACCCAATCACCAGCGCCTCCAGTGCCGTAAGGGCAGCCTCCTCCTCACCCCGGAGCTAAAGAGGAGGTTAGAGGAGCGGCGAGGGTCCGAGCCGCTCCGTGGCACCAAGGATCCGGGAGCTGCTTGTGACTCGGAGGACCATTCCCTGGGAAGTCATCACCACATGGAGGGCCACAAACACCACCTCCATCTGTCCAGCTGCCACGAATGCTTGGAGCTGGAGAACAGCACCATCCTCTCTGTCAAATATGCCTCCGCTGAGAACATTCCAGACCTTCCCGATGACAACTCAGTCGGGCTAGATAGTGGAGATGAGACTCTGGATGATGTTGAGCATGATGCCAAAGGGTTTTCTGGGCAAAGTGGTGGATTTGACTGTAAAAGCAAACCGCCAAATATTCTGCTGTACACGGGTGGTTGCCAGGAGCGTTTTGAGGCACTTCGCCAGCTTTTATCGGAGTGTATAAACATGGAAAACAACATAATATATCCGCTCCAACCCCAGCAGGCTCTGAGCGACCCTTGGCTGGACAACACCAGGCTCCTGGTACTGGCAGAGAAGGAAACCCTCACCCCCCAACTTCAGACCCGTTTCCTTACCTACCTGAGCCAGGGTGGCAGGGTCCTGGGGCTAGCCTCCACCCTGTGCCCGGCGGGCCTCTGTCTGAAACTCAGGGAGAGGCAGCGTGGGAAGGTCAGCAGGCTGAGCTTCACCAGGGAGGACAGCACCGAGCTGGAACTGAGCGTGTTGGCGAGCGGGATGGTCTACGTCAGGGATACTCAGGGAGGAGGGGAAGTGGAGCTCTGGGGGGAGCTGAAAGGGGACAGCCCTCATCAGAGGGATATGGTTGTAGTCAGGGTAACCCACCGAGGGGATGACGGCGAAGCTGTCCTCTGTCAGGCCCACCTGGAAATCGCTCCCGACTCGCAGAATTTGACATCGGAAGGATTCGATGAACTGAAGGTCAGCAATGCGCTGCGTTATGAAGTCCTGACAGAGATCCTCACCTCGCTGGGCCTCAGCTGTGAGCGAAACCAGACTCCAGCCCCAAGCCCGGTCCACCTGCTTGCCACCTCCCAGGAGACCAAGGCCATCTTCCTGAATTGGCTGCGGACACGTGCAGATCAAAATGGCCTCCTCACATTGTCCAAGGCCTCCCTCAGGATGCTGTCCTCTTCTGAGCTCCAGGATGGTCCTTCGCTGCCTGAGGGCTCTCTGGCCCTGGTCACCAACTCTTCAGAGTCCCAGAGCTGGCCGCACTTCAGTATGGAAACCTATAGCAAGAACCTGAAGACCAGCCTGCTGGGGCATACCGTGCTGTACGCTGAGGTGGTCACGTCTACCATGGACCTGCTACAAGGgCTGACTCTGCACTTACCAAAGGATGTGGGATTAATAGCAGTAGCTGCTCGACAAAGCCAGGGCAGAGGTCGGGGCGGGAACGCCTGGCTCAGCCCCCTAGGGTGTGCCATGTTCACCCTGTCGGTCCAGGTTGAGCTGAGCTCCAGGCTCGGACAGAGGATTCCCTTCCTGCAGCATCTGGCTGCTCTGGCCGTGGTGGAGGCTGTTCGCACGCTTCCTGGATACGAGGACATAGACCTGAGGGTGAAGTGGCCCAATGACATCTATTACAGTGACCTGATGAAGCTCGGGGGAGTACTGGTGACTTCCACTGTACTGGGATCAACTTTTCATCTGCTCATAGGCTGTGGGTTCAACGTGGCAAACAGCAACCCGACCGTGTGTATCAATGACCTGATCCAGCAGTACAACACGGAGCATAACTGCAGCCTGCAGCCGCTCGGCTGCGCCCAGCTCATCGCTCGCTCTGTCAACTGCCTGGAGACGCTCATCAGCAGCTTCCAACAAGGGGGCCCGGACGCCGTCCTGCCCACCTACTACAAGAGGTGGCTGCACAGCGGGACCCGGGTGCATCTCTGGAGCGAGGACGGACTGGAGGCTGAGGTGGTGGGTCTGGACAGCAACGGCTTCCTCCAAGTGTACAACAGGGAGCAAGGCACGGTCTCAGTGGAGCCTGATGGGAACTCCTTCGACATGCTGAAGAACCTGGTGGTCATCAAGAAGCATTAGGACCAAATTCAGCAAAATACAGAATCATCGTCTCTTTCAGCGGACTGAACCAATAACAGTAACTGACAGAAAACTTGATCTAACTATATAAATGTATCAGGGTTTTCTAATTGGTTAACACATAGCTGAATATGTTGCTGGTTTACAGTGGGAGTACAGGTTAGCATCTCCTTATGTTAACCTGACATACAGTTTACATATTTGAAGTAGTTTGGGGTTATTTGTGGGAAGACATCCAGTGATGGTAACTGGGTTTAAAGGCAGCGAGTAGCACGTGCATCAGTGATGGGTCACTAGCACATCCATCCCTTAGGTTATGACCTGCTGATTTGGGACCACCAGTTCAAACCATCACCTAACAACGTGCACTACTTTGTGGGAGCAGTACGTCTTGTACACCTCATCCAAACAGCTAACCTGAACAGGGATCATTGCAGCTTTTTGCTGTTGCAAAAATAATAAAGATTTCCACAGAAAAA
>XM_039777860.1
TACCCGCTTTTTAAATACATAGGCGAAATGTCGTAGCAATTAGCTTGACAGTTCGGCGGTAATGTTGTGACCGCTGTGAACGTCAATTTACATGGCATTAAAATACGGCCACGATGGCACTCTTCGTGTATGCCGGTTAAGATGTTAATAACATTGTGCTACGTCTATCTGTGGGTGCGCTTTCACAAGTGCTACTCGGTGCTGATCCGCAACAGCCTGTCCAGACTGAACAGCAGCACCTTCGGCTTCAGCTTCAGAGTGTGCTCCAGCCCGGCCTCAGCACCAAGCGCAGCATCGCCGACTGAACGCCACACAGCCGCCGCCGCACCCAGGCAGCCCAGCCCGGTCCCACTCGAGGACAGCGTCTTCCTTCAGCTGGGAGACAAAGCTGTCTATGTCACGGAGCCTCAGGCATGTGATGACCTCAGCAAATGGACTGTGCTGTTGGGGTCCTCTCTGGTTTGTGGTCCACGAATAGAGAATATTTCATTCATCATAGAAGCTACAGGACACAGAGTGGGCTACCATTCTCCTCACACATCGAATAAGAAAgTGCTGAAGTGGTCTGACTACTGTCTTCCTCTGGCCTGTAGCCCTGGCCAGCCATTCCGGGCTGTAGCTCAGGCCAGCATAGACAACTTCAGTCGACTGGGGGTGGCTTTTATCGAGGATCGCCTTCAGCTGGACAATGGACTTCTGCCTTCAAAGATAATCCCTGTCCTCCTCCAAGAATCCACTCTCAGTGAGCTGTTGGAGAAGCAGTGTCCAAAGACTGAGACGTCATCACATTGGCTCTGTGGCCCCCAGCCTGGAGAGGGTGTTGCTGAGCCTTTGCGTTGTCGGCTGTCACCCAATCACCAGCGCCTCCAGTGCCGTAAGGGCAGCCTCCTCCTCACCCCGGAGCTAAAGAGGAGGTTAGAGGAGCGGCGAGGGTCCGAGCCGCTCCGTGGCACCAAGGATCCGGGAGCTGCTTGTGACTCGGAGGACCATTCCCTGGGAAGTCATCACCACATGGAGGGCCACAAACACCACCTCCATCTGTCCAGCTGCCACGAATGCTTGGAGCTGGAGAACAGCACCATCCTCTCTGTCAAATATGCCTCCGCTGAGAACATTCCAGACCTTCCCGATGACAACTCAGTCGGGCTAGATAGTGGAGATGAGACTCTGGATGATGTTGAGCATGATGCCAAAGGGTTTTCTGGGCAAAGTGGTGGATTTGACTGTAAAAGCAAACCGCCAAATATTCTGCTGTACACGGGTGGTTGCCAGGAGCGTTTTGAGGCACTTCGCCAGCTTTTATCGGAGTGTATAAACATGGAAAACAACATAATATATCCGCTCCAACCCCAGCAGGCTCTGAGCGACCCTTGGCTGGACAACACCAGGCTCCTGGTACTGGCAGAGAAGGAAACCCTCACCCCCCAACTTCAGACCCGTTTCCTTACCTACCTGAGCCAGGGTGGCAGGGTCCTGGGGCTAGCCTCCACCCTGTGCCCGGCGGGCCTCTGTCTGAAACTCAGGGAGAGGCAGCGTGGGAAGGTCAGCAGGCTGAGCTTCACCAGGGAGGACAGCACCGAGCTGGAACTGAGCGTGTTGGCGAGCGGGATGGTCTACGTCAGGGATACTCAGGGAGGAGGGGAAGTGGAGCTCTGGGGGGAGCTGAAAGGGGACAGCCCTCATCAGAGGGATATGGTTGTAGTCAGGGTAACCCACCGAGGGGATGACGGCGAAGCTGTCCTCTGTCAGGCCCACCTGGAAATCGCTCCCGACTCGCAGAATTTGACATCGGAAGGATTCGATGAACTGAAGGTCAGCAATGCGCTGCGTTATGAAGTCCTGACAGAGATCCTCACCTCGCTGGGCCTCAGCTGTGAGCGAAACCAGACTCCAGCCCCAAGCCCGGTCCACCTGCTTGCCACCTCCCAGGAGACCAAGGCCATCTTCCTGAATTGGCTGCGGACACGTGCAGATCAAAATGGCCTCCTCACATTGTCCAAGGCCTCCCTCAGGATGCTGTCCTCTTCTGAGCTCCAGGATGGTCCTTCGCTGCCTGAGGGCTCTCTGGCCCTGGTCACCAACTCTTCAGAGTCCCAGAGCTGGCCGCACTTCAGTATGGAAACCTATAGCAAGAACCTGAAGACCAGCCTGCTGGGGCATACCGTGCTGTACGCTGAGGTGGTCACGTCTACCATGGACCTGCTACAAGGgCTGACTCTGCACTTACCAAAGGATGTGGGATTAATAGCAGTAGCTGCTCGACAAAGCCAGGGCAGAGGTCGGGGCGGGAACGCCTGGCTCAGCCCCCTAGGGTGTGCCATGTTCACCCTGTCGGTCCAGGTTGAGCTGAGCTCCAGGCTCGGACAGAGGATTCCCTTCCTGCAGCATCTGGCTGCTCTGGCCGTGGTGGAGGCTGTTCGCACGCTTCCTGGATACGAGGACATAGACCTGAGGGTGAAGTGGCCCAATGACATCTATTACAGTGACCTGATGAAGCTCGGGGGAGTACTGGTGACTTCCACTGTACTGGGATCAACTTTTCATCTGCTCATAGAATGACCTATCACTATTACCATGATATGCCCTGCAGGCTGTGGGTTCAACGTGGCAAACAGCAACCCGACCGTGTGTATCAATGACCTGATCCAGCAGTACAACACGGAGCA

Function

symbol description
hlcs Predicted to enable biotin-[acetyl-CoA-carboxylase] ligase activity. Predicted to be involved in histone biotinylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in holocarboxylase synthetase deficiency. Orthologous to human HLCS (holocarboxylase synthetase).

NR:

description
biotin--protein ligase

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity molecular_function

KEGG:

id description
K01942 HLCS; biotin---protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777858.1 True 3418 mRNA 0.54 11 31430440 31476433
XM_039777859.1 False 3277 mRNA 0.55 10 31430440 31476433
XM_039777860.1 False 2666 mRNA 0.56 10 31431772 31476434

Neighbor

gene id symbol gene type direction distance location
riox2 mina coding downstream 59434 31357829 ~ 31371006 (-)
bhlha9 bhlha9 coding downstream 92783 31336001 ~ 31337657 (-)
wscd1b wscd1 coding downstream 164753 31243993 ~ 31265687 (-)
samsn1b NA coding downstream 441863 30966631 ~ 30988577 (-)
serpinh1a LOC103370387,LOC104930320 coding downstream 520076 30903631 ~ 30910364 (-)
ska2 NA coding upstream 33126 31509560 ~ 31528558 (-)
tiprl NA coding upstream 55223 31531657 ~ 31542171 (-)
LOC120543743 irf2bp1 coding upstream 135341 31611775 ~ 31616648 (-)
hnrnpl LOC102310682,LOC102197207,LOC103368863 coding upstream 143273 31619707 ~ 31633080 (-)
slc8a2a LOC106917460,LOC103141039 coding upstream 158502 31634936 ~ 31669195 (-)
G170209 NA non-coding downstream 47949 31382209 ~ 31382491 (-)
G170205 NA non-coding downstream 83039 31346574 ~ 31347401 (-)
G170202 NA non-coding downstream 139427 31290711 ~ 31291013 (-)
G170154 NA non-coding downstream 285852 31143942 ~ 31144588 (-)
G170147 NA non-coding downstream 289566 31140478 ~ 31140874 (-)
LOC120544288 NA non-coding upstream 89934 31566368 ~ 31590013 (-)
G170332 NA non-coding upstream 268417 31744851 ~ 31745684 (-)
G170424 NA non-coding upstream 423652 31900086 ~ 31901144 (-)
G170425 LOC103357888 non-coding upstream 425578 31902012 ~ 31906986 (-)
G170432 NA non-coding upstream 487166 31963600 ~ 32000128 (-)
G170098 NA other downstream 471942 30957501 ~ 30958498 (-)
LOC120543892 LOC103394800 other downstream 579386 30846998 ~ 30851054 (-)
LOC120543890 LOC103370389,LOC108247974,LOC103394800,LOC106674904 other downstream 600131 30737565 ~ 30830309 (-)
LOC120575604 NA other downstream 698358 30718215 ~ 30732082 (-)
si:ch73-1a9.3 NA other downstream 1015705 30411229 ~ 30414735 (-)
G170463 NA other upstream 725275 32201709 ~ 32202206 (-)
LOC120543978 fez1 other upstream 966852 32443286 ~ 32491305 (-)
ntm LOC100703630,LOC102197934,LOC101488072,LOC102307721,LOC103141059 other upstream 2092187 33568621 ~ 34100246 (-)
G170802 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC103356012,LOC107574861,LOC108179079 other upstream 2832560 34308994 ~ 34309714 (-)
cblb cblb other upstream 3446939 34923373 ~ 35016119 (-)

Expression


Co-expression Network