Gene
RNA
| Item | Value |
|---|---|
| gene id | hspb1 |
| gene name | hspb1 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053127.1 |
| NCBI id | CM020924.1 |
| chromosome length | 37730433 |
| location | 28207663 ~ 28212119 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| hspb1 | Acts upstream of or within regulation of myofibril size; response to arsenic-containing substance; and response to heat. Located in cytoplasm and nucleus. Is expressed in several structures, including mesoderm; musculature system; nervous system; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2F; distal hereditary motor neuropathy type 2B; pancreatic cancer; and sarcoma. Orthologous to human HSPB1 (heat shock protein family B (small) member 1). |
| description |
|---|
| heat shock protein, alpha-crystallin-related, 1 |
| id | description |
|---|---|
| K04455 | HSPB1; heat shock protein beta-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039826546.1 | True | 1392 | mRNA | 0.53 | 3 | 28207663 | 28212119 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hsf5 | NA | coding | downstream | 174047 | 28028351 ~ 28033616 (-) |
| mtmr4 | NA | coding | downstream | 287398 | 27875127 ~ 27920265 (-) |
| ca4a | ca4,LOC104949315,LOC103363689 | coding | downstream | 334425 | 27800213 ~ 27873238 (-) |
| LOC120544612 | NA | coding | downstream | 375458 | 27816207 ~ 27832205 (-) |
| znhit3 | NA | coding | downstream | 508914 | 27693482 ~ 27698749 (-) |
| LOC120544092 | c1qbp | coding | upstream | 136497 | 28348616 ~ 28356555 (-) |
| dhx33 | dhx33,LOC103370271 | coding | upstream | 146658 | 28358777 ~ 28367461 (-) |
| camkk1a | camkk1 | coding | upstream | 187248 | 28399367 ~ 28470511 (-) |
| atp2a3 | atp2a3 | coding | upstream | 263794 | 28475913 ~ 28539128 (-) |
| zzef1 | zzef1 | coding | upstream | 382305 | 28594424 ~ 28632819 (-) |
| G169387 | ssc4d | non-coding | downstream | 3910 | 28163135 ~ 28203753 (-) |
| G169289 | NA | non-coding | downstream | 412875 | 27790056 ~ 27794788 (-) |
| G169275 | NA | non-coding | downstream | 458105 | 27749305 ~ 27749558 (-) |
| G169255 | NA | non-coding | downstream | 490731 | 27713939 ~ 27716932 (-) |
| G169241 | NA | non-coding | downstream | 571644 | 27635596 ~ 27636019 (-) |
| G169399 | NA | non-coding | upstream | 22471 | 28234590 ~ 28234949 (-) |
| G169402 | NA | non-coding | upstream | 118533 | 28330652 ~ 28330971 (-) |
| G169417 | NA | non-coding | upstream | 144892 | 28357011 ~ 28357377 (-) |
| G169447 | NA | non-coding | upstream | 184861 | 28396980 ~ 28399180 (-) |
| G169524 | NA | non-coding | upstream | 487702 | 28699821 ~ 28704621 (-) |
| LOC120544668 | tspoap1 | other | downstream | 85045 | 28047607 ~ 28122618 (-) |
| LOC120544024 | rnf43 | other | downstream | 179886 | 27930539 ~ 28027777 (-) |
| gusb | gusb | other | downstream | 461205 | 27718999 ~ 27746458 (-) |
| pigw | pigw,LOC107090330,LOC102785725,LOC102220786 | other | downstream | 506112 | 27668681 ~ 27701551 (-) |
| emc6 | emc6 | other | downstream | 688662 | 27515890 ~ 27519001 (-) |
| srrm3 | srrm3,LOC103395181,LOC102790399,LOC102288945 | other | upstream | 5124 | 28217243 ~ 28313133 (-) |
| LOC120575713 | mlxipl | other | upstream | 102050 | 28314169 ~ 28347490 (-) |
| ube2g1a | ube2g1,ube2g1a,UBE2G1,LOC107597432,LOC107722775,LOC107712369 | other | upstream | 442758 | 28654877 ~ 28664051 (-) |
| atp5l | atp5l,LOC102215954 | other | upstream | 592259 | 28804378 ~ 28808441 (-) |
| LOC120544028 | LOC107730113 | other | upstream | 1550330 | 29762449 ~ 29796427 (-) |
