G172467 (LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581)


Basic Information

Item Value
gene id G172467
gene name LOC100707786,LOC102781123,LOC101463670,LOC102205300,LOC105936581
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3464096 ~ 3475048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU233655
CTGTAAAAACAGGGTTGTCCAAGTCTGTTTTGTAAAGTGATGGTTCTTCCGCTGCGTGAACACACAGTGGGATTGTAGTAAAAGCAAAGAGATtacagtaatcagattacaaaACAAAACTGCAGTATCGGCCATTTTGAGCAGTTTTCCGGGATTTGGAAAAGTTATGTTGAAATTGTCTCTTTGACACTCTCCTAACTCCGATTATTGTAAATTATGACAAGAAAATTACAGTTCTCACTGTAACTAAAAGTAATCTGATTATTTCCACAATAATTTAGCTTTGAGTATTTTGATCTCCTCAACTctgtattaaataataaaagatcaacttcacactgtaaaaaattgAGTTATTCAAACAATGTTTTTACTGTAACTTAGAATAAAATCAGTGGTGGAAAATTGTTTCCATTCTTTCCAGTACAGTTTATTTACTGAGATGacatctgaaaataaaaattggaaATCTGTCAGTAAATGTAGTTcacctgtcaaataaatgtgcCTGTTCACATACACAGTCTCTTCAAATTAAATTAGCCCCCATCTCCTCTTAAAAAATTCAACGTCAGAACTTCGCTCTCctctaagccccgcccccctctGGCTGGGTGATTGACAGCGGTTTATGGGGCTACATAAATCCCGTTAAACGTCCATCTGTCCTGTTGAGGCGTCGTTGACGTCTTGCTCTCTGCCTCGCTCCGACCGAGAGTTCGAGCAAAACGACAAAATGGTCAAAGTAAACCCTCGGCCTCTCGACCTATCGGCTTATTTTCCCATGCACATTCTCCTGGTGTCCCGCCTCCTCAGCAGCTGGAGTCCTCGCTGCCGgtgcctccccctcctcctccagacTTTGCAGTGGCTGAGCCAACAGCGATTTGGCAGCCGTTGGTGACGTGACTCATGACCTTCTGTTTTAGCTGCGCAACCTGCTCCCGCAGCATGGCGGCGGTGGAGGCCAGGTCCAAGTTCTGGTTCTTAAGAGCCTTCACCTTCTCCTCCAGCCGCGAGATCCGCTCCAGCTTCCGCTTGCGGCACTTGGACGCGGCGATACGGTTGCGGAGCTTCTTGCGTTCTGCTTTGATCCGTTCCTGTGTCTCCAGGTCTATCGGGGAGAGGGAGGGCGGGGATGTGGGGTCGCCCGGCGGTTGAGGCACCTCAGGGACAGTCTGAGGGGCGTCCATGCCTCGGGTGTGGTGTTGAGGGACTCCACCACCACCATGGCCTGAGGCGCTACCGTACGCCATCTGCCCCACAGGGTACGTCACCTGGCCTGGGTTGTAGCTGCTGAGATTGGTGTAGACAGGCATGTCTGCGCTGGACATCAGGTTCCTCTGGTAGGATGTCTGCAGGGAGACGGTGGAGGATGAGGACGGGGACATGGAGCCGCCTCCCACCAGCTGGTTCTGCTTGTGAAGGTCGGCGAGCGCTTTGACAAAGCCATCAGCAAATCCTTCTTGCTCGTTGGTGGCCTGGTTGCGGTACATGAAGGGATTGTTGGAGTTCGACACGGGACAGGTGGTGACCAGTCCTTGGTTGGACTGGATGATCAGGTGCTCCAGGTCAGGGGACGCCAGCTTCAGCAGATTCATGTCCGTCGATGGCGCCGCTGATGTCATCAAGGAGCTGTTGCCGGCGAGTCCCAGGTTGTGGTGGTTTCCGCCCCTGCCTCCTGCTGCACCACCGCCTGGGAAGTGATGACTGCCCACCATTGACATGACCTTCTTATTCATCAGCATCTTGCTTCCCGGATAACGCTCGTATTCCGCGATCTGGGTGAAGCCGGGGACGACTTCAGCCAAGCGGGAGTCATCGTGGTAGAAAGGTGTCTCCATCTTAGCTGTCATTGACAAAAAGGCGTCTCAGAGGAAATCTTCATAATCAGATTATCCTGAATATAAGAGGGGATTGAAATGTTCCCCTGACGTCGGCGGCTGGAGGATGAAGGCAGGacgaagagaagaagagaaggcgATGCGCTTCCAACACGTTAAAGTTCCCGGTACAGCCGTTAACTTCACACCGCGAGGCTGGTGGAAATCCAC

Function

NR:

description
PREDICTED: transcription factor AP-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233655 True 2054 lncRNA 0.51 2 3464096 3475048

Neighbor

gene id symbol gene type direction distance location
thap1 NA coding upstream 113246 3346990 ~ 3350850 (+)
ccdc82 NA coding upstream 127806 3333869 ~ 3336290 (+)
wdr91 NA coding upstream 131925 3297802 ~ 3332171 (+)
LOC120545959 LOC105917138,LOC107386205,LOC101157706,LOC102791398 coding upstream 168564 3294310 ~ 3295532 (+)
LOC120545835 NA coding upstream 306597 3149045 ~ 3157499 (+)
ptpa ptpa,LOC102782294 coding downstream 155788 3630836 ~ 3664799 (+)
ntmt1 ntmt1 coding downstream 336711 3811759 ~ 3817125 (+)
fpgs fpgs,LOC101484618 coding downstream 676587 4151635 ~ 4175426 (+)
skp2 NA coding downstream 707642 4182690 ~ 4194396 (+)
LOC120544947 LOC103372689,LOC101471878 coding downstream 734350 4209398 ~ 4226916 (+)
G172455 NA non-coding upstream 38716 3423928 ~ 3425380 (+)
LOC120546052 NA non-coding upstream 93892 3362304 ~ 3370204 (+)
G172377 NA non-coding upstream 106568 3355633 ~ 3357528 (+)
G172376 NA non-coding upstream 108942 3351290 ~ 3355154 (+)
G172372 NA non-coding upstream 149060 3246392 ~ 3315036 (+)
G172484 NA non-coding downstream 64995 3540043 ~ 3540433 (+)
G172513 crat,LOC101079408 non-coding downstream 122390 3597438 ~ 3602061 (+)
G172551 NA non-coding downstream 207265 3682313 ~ 3683398 (+)
G172562 NA non-coding downstream 239799 3714847 ~ 3715091 (+)
G172563 NA non-coding downstream 269586 3744634 ~ 3745001 (+)
c17h18orf54 LOC104942443 other upstream 186887 3253951 ~ 3277209 (+)
LOC120545792 NA other upstream 333327 3126870 ~ 3130769 (+)
G172304 NA other upstream 512356 2951440 ~ 2951740 (+)
G172234 NA other upstream 1112921 2341465 ~ 2351175 (+)
chd1 chd1 other upstream 1962387 1456940 ~ 1501709 (+)
ephx2 ephx2 other downstream 385356 3860404 ~ 3884766 (+)
lmo4a LOC102310319,LOC102784110,LOC101485387,LOC104926255,LOC103361298,LOC102201780 other downstream 462720 3937768 ~ 3975063 (+)
slc25a25b LOC100697124,LOC102781873,LOC104939232 other downstream 1142383 4617431 ~ 4647760 (+)
G173053 NA other downstream 1886519 5361567 ~ 5363024 (+)
LOC120545234 NA other downstream 1989128 5464176 ~ 5467241 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029765 june coding NC_007116.7 CM002889.2 393738 ~ 396015 (+)
grasscarp (Ctenopharyngodon idella) CI01000205_00077363_00081315 NA coding CI01000205 null 76116 ~ 81315 (-)