G180978 (hsdl2,LOC104953801,LOC107558657)


Basic Information

Item Value
gene id G180978
gene name hsdl2,LOC104953801,LOC107558657
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36123079 ~ 36311704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU245315
CCGCGCTGTGCGGCCCAAAGACTACACGGGTCACTTCCTGGTGGACGAGGACGTCCTCAAGGAGACCGGGGTCCAGGACTTCCAGCAGTACGCCGTCCAGCCAGGTCACCCTCTGCTGCCGGACTTCTTCCTGGACGAAGCTCCAGAGACTCTGGTGGAGAAGATGGAGCAGCACGGGGCAACGCCCGCCTTCAAACCGCCCTCCTCATCGGCCACGCCCTCCTCCAGTGGACCAATAGAAAGCACGTTTGATGCCATCAGAGGAGTCCTCAACGAAGACGTGGTTAAGGTCACGCAGGGAGTTTATCAGTTCGACCTATCAGgaGAACATGGGGCGTTTGGTTTCTGGACCTGAAGAGCGGTTCTGGC
>TU245316
TAACTAGCGTGCTAATGTTTCAGGTCTAAGCTGGTCATCCCCCACCTGCTGAAGAGTTCCAGACCTCACATCCTGAACCTGTCGCCCCCCCTCAACCTCAACCCCGTCTGGTTCAAGAACCACACCGCGTACACGATGGCCAAGTACGGCATGTCCATGTGTGTCCTGGGGATGGCCGAAGAGTTCAGAGGTCAGATCGCTGTCAACGCCCTCTGGCCCAAAACAGgaGAACATGGGGCGTTTGGTTTCTGGACCTGAAGAGCGGTTCTGGC
>TU245318
GAATCGACATCCTGGTGAACAACGCCAGCGCCATCAACCTCACGGGGACTCTGGAGACGGCGATGAAGAAGGTCGACCTGATGCTGGGGATCAACCTGAGGGGTCTAAGCTGGTCATCCCCCACCTGCTGAAGAGTTCCAGACCTCACATCCTGAACCTGTCGCCCCCCCTCAACCTCAACCCCGTCTGGTTCAAGAACCACACCGCGTACACGATGGCCAAGTACGGCATGTCCATGTGTGTCCTGGGGATGGCCGAAGAGTTCAGAGGTCAGATCGCTGTCAACGCCCTCTGGCCCAAAACAGCGATCTGACCTCTGAACTCTTCGCCATCCCCAGGACACACATGGACATGCCGCACTTGGCCATCGTG

Function

symbol description
hsdl2 Predicted to enable oxidoreductase activity. Predicted to be located in peroxisome. Predicted to be active in mitochondrion. Orthologous to human HSDL2 (hydroxysteroid dehydrogenase like 2).

NR:

description
PREDICTED: hydroxysteroid dehydrogenase-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245315 False 369 lncRNA 0.60 4 36301341 36305812
TU245316 False 272 lncRNA 0.56 3 36301341 36309949
TU245318 True 372 lncRNA 0.58 4 36123079 36311704

Neighbor

gene id symbol gene type direction distance location
LOC120545306 NA coding downstream 84752 36016537 ~ 36038327 (-)
LOC120545307 NA coding downstream 115194 36004714 ~ 36007885 (-)
LOC120545315 NA coding downstream 133867 35923353 ~ 35989212 (-)
LOC120545102 NA coding downstream 136893 35973604 ~ 35986186 (-)
LOC120545313 NA coding downstream 202958 35906321 ~ 35920121 (-)
LOC120545285 NA coding upstream 32306 36344010 ~ 36353479 (-)
il7r NA coding upstream 147591 36459295 ~ 36475215 (-)
LOC120545277 NA coding upstream 370204 36681908 ~ 36689875 (-)
LOC120545278 NA coding upstream 598749 36910453 ~ 36921735 (-)
LOC120545269 NA coding upstream 650276 36961980 ~ 36968041 (-)
LOC120545339 NA non-coding downstream 52456 36066822 ~ 36070623 (-)
LOC120545349 NA non-coding downstream 71242 36050980 ~ 36051837 (-)
G180968 NA non-coding downstream 103402 36018926 ~ 36019677 (-)
G180924 NA non-coding downstream 138149 35978810 ~ 35984930 (-)
G180967 NA non-coding downstream 156941 35965750 ~ 35966138 (-)
G181008 NA non-coding upstream 3725 36315429 ~ 36323276 (-)
G181018 NA non-coding upstream 73126 36384830 ~ 36482105 (-)
G181019 NA non-coding upstream 125279 36436983 ~ 36444969 (-)
G181024 NA non-coding upstream 172090 36483794 ~ 36487729 (-)
G181028 NA non-coding upstream 183390 36495094 ~ 36495433 (-)
G180916 NA other downstream 52438 35816790 ~ 36070641 (-)
LOC120545322 mocs2,LOC104936384,LOC103375245 other downstream 87156 35689754 ~ 36035923 (-)
G180944 NA other downstream 548454 35572178 ~ 35574625 (-)
LOC120545308 NA other downstream 688218 35036695 ~ 35434861 (-)
G180873 NA other downstream 1101002 34986221 ~ 35022077 (-)
myo5b myo5b other upstream 177227 36488931 ~ 36576179 (-)
G181036 LOC102796183 other upstream 371010 36682714 ~ 37034186 (-)

Expression


Co-expression Network