XLOC_000491 (si:ch211-89o9.4)


Basic Information

Item Value
gene id XLOC_000491
gene name si:ch211-89o9.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 41454210 ~ 41464007 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000855
AAAGCAAAGGGAAAGCCTTGGTGGAAACGATATGGGTGGTGTTGGGTGGGCAGGCATGTGTCCTAGTCAGGGGGATGTAAACATACTACTAAGAAAGAATGTTAGAGAGCGTGTCTTACTAGAGGGAGCAGTGGGATAAGATTTACAGAAGCCGGCCAAAGTCAATCTGCATTAGATGTACAATAATCAAATACAAGTTGAGTAGTTTATAGTTAATGATACTATGGACTGATAAAAATCAAGAGAGACGGTTGAAGATTTGGAGCAACTTTTGAAAGTTGAAGCAATAATGAAGAAGAATTCAGTCCAAAGGGAAAGAAACTGCAGCTCAGATTTAACCAGTGGCAACATATTTGCACATACTCCTCAAATCCATACCAGGCCAGTGTGTTGGTCTCAGATGAGCAGTATTTTCAGCAGTCCGCCGCTGTTATTTGGAACAACACAAGATTTCCTGTGTAAACTCGCCCAAATTGAAGCTCAGCTGCTCTTGAACCTGATTAGTAATGCTGCAGGTGGAAATAATGCTGGTTATGGGAACCCGTTTATTCCTCTCTTACAGCCTTTTGGCATTCAAAGATCCTCATTTCTGAGAATGAACCAGCCTACAGGTGTGTTTACCCTTAACAGAAAAAACATGGATAACATCCCTCAAGTGTTTAGTTTCCCCTCATCACCAGTCACAGAAAATAATACAGTCATTGCAAACAAGATTAGTGACTTTCTTAGTCCTATGATTAGCTCTCAATACCAGTCAAGGACAGCCAAAGCAATGATGCGTCCTGACAGACCACAAACTGAAGAAGTTGAGCCAAAGCAACCAGTAATGCGAGATATTGCAACAGAAAATCTGATCAAAGTTTTAGCCAGTCTTGGCCTCTCTCTTGAAGACTTGGAAATACTCAGTCACTTTCCAGACAACCAGCTAACAACAGAAAAACTGCCCCTCATCATACAAGACATCCAACGCCACAAAGAGACAAAGGGTCTTGAATATGAGCACGATAGATGGGACTCATCTAATCATGTGAGATCATCCAGAAAGTTATCATATGCTCCTGGGAAGTATCATGATCAAGATCAAAGGCACAGTGAATGGCAGAAATGTGAAAAACTAAGTTCCTATGAACAGTCCTGTAGCTCCAATTTCCATAGGAGCACCCTCAGTGCTGAAAGATACAGCCCATCAGAACTTGTGCATCAGAACTTTTCTACCCAGTCCAGAACGCTGAAAAGAGTCATATCGGGAAATAAAACCGACGCTTTTCTTAAAAGACCTCCATGTGGGCCTGCTGAAGTCACCAAACTGAGGCCTGGTTCAGTATTCCCCCCTTCTCAGTCAAAGTGCAGCATCCGTCGCTGTTTTGGCTATCGAGACTGTAACAAAAGAAGACGTTATACAAGGAAAAGATGCTTTTCATCTTCACAAAGATATGCCACTTCCATTACCTCAAGAAATGATCATCAACAGTCTTCATTTCCAGACGTGTCTGAAACCACGAAAATTTACACGGCACAAACTTCGACACAAAGTAAAGGTGTGATTCGTGTGTCTGGAGTCCCTCTTGATTACTCAGAGAGTGAGCTTATCAAAATGGCATCTCCGTTTGGTCACCCTGTTAACATTTTAATGGCAACTGAGATTGACACAGCAACCTGTCTTGAGTGGAAGAAGgcTTTATTAATTCTTCCAACTAAATCCTCAGCCCATGAGATGGTGAAGGTTTACTCTGCTATCCCACTCCACATGAGAGAGCAAAGTTTGGAGCTGGTGTCCCAAACAGTTGACCTTAGTTCACCTGTTTCAGTGTTTCATGCTTTTGTGAGGCCGTTAATGTCAAATGGATTGCTGACACCTTTGGACCATTTATTAGTTGTGTGTAACATGCCAAACAAGCCTTGCGCTGCTACAGGAGTGCTAAGGCTGATAAAACCTTTTGGACAAGTTTTACAAACTCTGGTGTTGAATAGAAACAAGgTGAATGCAGATCAGTGCCTTTCTAACAAGAGCAGTGTCCAGATGGTTTTAGAGATGGAGTCTGCATCGGTTGCTTTATCTGTATATGAGTGGTCTCGAAAAATTCCTTGTCTTTATCACAATCATCATCTCTCTTTCTTCAGAGGATGTGATATACAGGACAAAAGCTGATGGTAAATCAGCGTAATATCTTCacaattgtttattgttttgtgttaCTTTTGTAATAAAATACATAGAAACAAGGTCATATTGTTGTCTGATGAAGAAGAAAATAACCATTGCATGtcatataataatgtaatttaagtactcatttgtaaatatattatcCTTTGTAGTGATATATGGtggttattctgctgtggcgaccaagTGAGTGAGAAatcatatgtaatattttttaatgaagtcatttaaagttttaaattgggTTTAGTTTATCCAGTATACTGGACGATATTTATCCAGTATCAAACAAAGAGCCATAAAAAACTATAGgctaaatcaaattaaatgatcACTGAGTTCACAATCTAACCTCAGAACTAAATCACCCCAAAAACGTTTCTTATTGAAGGC
>TCONS_00000856
AAGACATCCAACGCCACAAAGAGACAAAGGGTCTTGAATATGAGCACGATAGATGGGACTCATCTAATCATGTGAGATCATCCAGAAAGTTATCATATGCTCCTGGGAAGTATCATGATCAAGATCAAAGGCACAGTGAATGGCAGAAATGTGAAAAACTAAGTTCCTATGAACAGTCCTGTAGCTCCAATTTCCATAGGAGCACCCTCAGTGCTGAAAGATACAGCCCATCAGAACTTGTGCATCAGAACTTTTCTACCCAGTCCAGAACGCTGAAAAGAGTCATATCGGGAAATAAAACCGACGCTTTTCTTAAAAGACCTCCATGTGGGCCTGCTGAAGTCACCAAACTGAGGCCTGGTTCAGTATTCCCCCCTTCTCAGTCAAAGTGCAGCATCCGTCGCTGTTTTGGCTATCGAGACTGTAACAAAAGAAGACGTTATACAAGGAAAAGATGCTTTTCATCTTCACAAAGATATGCCACTTCCATTACCTCAAGAAATGATCATCAACAGTCTTCATTTCCAGACGTGTCTGAAACCACGAAAATTTACACGGCACAAACTTCGACACAAAGTGTATGTTTATAATACGAATTTTGATTATTGATATCGTCAATGAAATAACGTCAACAAAACATTAAGATGTAAATTTTATCTCAACTGTGCAGGCTGAAAATAAAAGATACTTTTTAAAAG
>TCONS_00003106
AAGACATCCAACGCCACAAAGAGACAAAGGGTCTTGAATATGAGCACGATAGATGGGACTCATCTAATCATGTGAGATCATCCAGAAAGTTATCATATGCTCCTGGGAAGTATCATGATCAAGATCAAAGGCACAGTGAATGGCAGAAATGTGAAAAACTAAGTTCCTATGAACAGTCCTGTAGCTCCAATTTCCATAGGAGCACCCTCAGTGCTGAAAGATACAGCCCATCAGAACTTGTGCATCAGAACTTTTCTACCCAGTCCAGAACGCTGAAAAGAGTCATATCGGGAAATAAAACCGACGCTTTTCTTAAAAGACCTCCATGTGGGCCTGCTGAAGTCACCAAACTGAGGCCTGGTTCAGTATTCCCCCCTTCTCAGTCAAAGTGCAGCATCCGTCGCTGTTTTGGCTATCGAGACTGTAACAAAAGAAGACGTTATACAAGGAAAAGATGCTTTTCATCTTCACAAAGATATGCCACTTCCATTACCTCAAGAAATGATCATCAACAGTCTTCATTTCCAGACGTGTCTGAAACCACGAAAATTTACACGGCACAAACTTCGACACAAAGTGTATGTTTATAATACGAATTTTGATTATTGATATCGTCAATGAAATAACGTCAACAAAACATTAAGATGTAAATTTTATCTCAACTGTGCAGGCTGAAAATAAAAGATACTTTTTAAAAGAATTCATACTGGCAGTCTCGTGTGGTAGCAAATTCATAATTGAGAGGACAGTGACTTCTAGTGGTGAATGGAGTGCAGTTAGGTCATTTACCGGAGAGGAAACTGGTGTTTCGAACTGCACTGCATTTGCAAGGTCTCGAGTTTTACTGATTTACCTTCATACTGCACTGTGTTAAAGTCTCTTTATGTTTTCTAACAGAAAGGTGTGATTCGTGTGTCTGGAGTCCCTCTTGATTACTCAGAGAGTGAGCTTATCAAAATGGCATCTCCGTTTGGTCACCCTGTTAACATTTTAATGGCAACTGAGATTGACACAGCAACCTGTCTTGAGTGGAAGAAGgcTTTATTAATTCTTCCAACTAAATCCTCAGCCCATGAGATGGTGAAGGTTTACTCTGCTATCCCACTCCACATGAGAGAGCAAAGTTTGGAGCTGGTGTCCCAAACAGTTGACCTTAGTTCACCTGTTTCAGTGTTTCATGCTTTTGTGAGGCCGTTAATGTCAAATGTAAGTATGCCTTGTTCTCAAGACATAACAACATTTTTAAGTGATTTTTAAAATCAACTAACTTCTTTAGGGATTGCTGACACCTTTGGACCATTTATTAGTTGTGTGTAACATGCCAAACAAGCCTTGCGCTGCTACAGGAGTGCTAAGGCTGATAA
>TCONS_00000857
AAGTGTATGTTTATAATACGAATTTTGATTATTGATATCGTCAATGAAATAACGTCAACAAAACATTAAGATGTAAATTTTATCTCAACTGTGCAGGCTGAAAATAAAAGATACTTTTTAAAAGAATTCATACTGGCAGTCTCGTGTGGTAGCAAATTCATAATTGAGAGGACAGTGACTTCTAGTGGTGAATGGAGTGCAGTTAGGTCATTTACCGGAGAGGAAACTGGTGTTTCGAACTGCACTGCATTTGCAAGGTCTCGAGTTTTACTGATTTACCTTCATACTGCACTGTGTTAAAGTCTCTTTATGTTTTCTAACAGAAAGGTGTGATTCGTGTGTCTGGAGTCCCTCTTGATTACTCAGAGAGTGAGCTTATCAAAATGGCATCTCCGTTTGGTCACCCTGTTAACATTTTAATGGCAACTGAGATTGACACAGCAACCTGTCTTGAGTGGAAGAAGgcTTTATTAATTCTTCCAACTAAATCCTCAGCCCATGAGATGGTGAAGGTTTACTCTGCTATCCCACTCCACATGAGAGAGCAAAGTTTGGAGCTGGTGTCCCAAACAGTTGACCTTAGTTCACCTGTTTCAGTGTTTCATGCTTTTGTGAGGCCGTTAATGTCAAATGTAAGTATGCCTTGTTCTCAAGACATAACAACATTTTTAAGTGATTTTTAAAATCAACTAACTTCTTTAGGGATTGCTGACACCTTTGGACCATTTATTAGTTGTGTGTAACATGCCAAACAAGCCTTGCGCTGCTACAGGAGTGCTAAGGCTGATAA

Function

symbol description
si:ch211-89o9.4 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0048025 negative regulation of mRNA splicing, via spliceosome biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-134 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000093237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000855 False 2560 mRNA 0.40 8 41454210 41464007
TCONS_00000856 False 698 lncRNA 0.40 2 41460090 41461634
TCONS_00003106 False 1364 lncRNA 0.41 4 41460090 41463239
TCONS_00000857 True 790 lncRNA 0.39 3 41461511 41463239

Neighbor

gene id symbol gene type direction distance location
XLOC_000490 CR974461.1 coding upstream 122438 41318241 ~ 41331772 (+)
XLOC_000489 AL954671.1 coding upstream 184323 41269773 ~ 41269887 (+)
XLOC_000488 lrpap1 coding upstream 312764 41131481 ~ 41141446 (+)
XLOC_000487 BX511116.1 coding upstream 328808 41125286 ~ 41125402 (+)
XLOC_000486 NA coding upstream 401637 40837105 ~ 41052573 (+)
XLOC_000492 paip2b coding downstream 1764 41465771 ~ 41472087 (+)
XLOC_000493 dok1a coding downstream 14338 41478345 ~ 41484861 (+)
XLOC_000494 si:ch211-89o9.6 coding downstream 23332 41487339 ~ 41492776 (+)
XLOC_000495 dtx4b coding downstream 34181 41498188 ~ 41530541 (+)
XLOC_000496 si:dkey-56e3.2 coding downstream 124064 41588071 ~ 41593446 (+)
XLOC_000481 CABZ01072532.1 non-coding upstream 730576 40716379 ~ 40723634 (+)
XLOC_000500 NA non-coding downstream 301609 41765616 ~ 41797116 (+)
XLOC_000502 NA non-coding downstream 414436 41878443 ~ 41878892 (+)
XLOC_000504 NA non-coding downstream 485296 41949303 ~ 41950349 (+)
XLOC_000505 NA non-coding downstream 519350 41983357 ~ 42026604 (+)
XLOC_000506 BX901901.1 non-coding downstream 630617 42094624 ~ 42094739 (+)

Expression


Co-expression Network