G183896 (ccnk)


Basic Information

Item Value
gene id G183896
gene name ccnk
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12701168 ~ 12703242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU249032
CTGCTTAAAGGAGTGAAACATGTAGAAGCGGTGGAAGTATATGATGCCAGTTGCCAGTGTGTCATAGTGTGGCCAAGTCTGGTCCCCACGTCAAAAATGAAGCGGGCTCCTTCTCTCCGATACCGGGCCTCTGTGCCAGGGTCCAGGCCTTCAGACTGAGAGGGGGTGTGGGCTAAATCCTTCTTGTCCCAGTACCAGCATGGCTTGATGTGGTCCAGGATTAGTTGGCCTGAAAAGTTCTCCTTGAATTCCTTCATTGGCTGAGGAGAGGCAACGGTGGATGGACCCGCTGCACCGGACTGCCAGGTTACTTTAACATGTAGCCGTCGGAGTAAATTACCCAAAACAGACAGGTGTGTGAATAATCCGCAGTTATTCACAAGAAGTTGGCTAACAAGTGATCCACAACAATTCCCATTGTAAAGGGCACCGCCATTATGGAGTACGTTAGACACTGTTGGCAGACGTCATTACGCAGGACATCTGATACACGTGCTGTgagcatagacagtatggtcctcttcttctactactactactactactactact

Function

symbol description
ccnk Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within central nervous system development. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Is expressed in central nervous system. Orthologous to human CCNK (cyclin K).

NR:

description
PREDICTED: cyclin-K isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249032 True 552 lncRNA 0.49 3 12701168 12703242

Neighbor

gene id symbol gene type direction distance location
ccdc85cb ccdc85c coding upstream 10368 12640656 ~ 12690800 (+)
LOC120546362 NA coding upstream 62643 12632013 ~ 12638525 (+)
LOC120546363 NA coding upstream 71314 12617707 ~ 12629854 (+)
LOC120546361 NA coding upstream 102444 12589905 ~ 12598724 (+)
LOC120546360 NA coding upstream 112076 12583304 ~ 12589092 (+)
agbl5 agbl5 coding downstream 186019 12889261 ~ 12907305 (+)
selenoi selenoi coding downstream 205725 12908967 ~ 12922556 (+)
tbx18 tbx18 coding downstream 353191 13056433 ~ 13066587 (+)
irak1bp1 NA coding downstream 436739 13139981 ~ 13141521 (+)
enpp5 enpp5 coding downstream 517864 13221106 ~ 13228478 (+)
G183891 NA non-coding upstream 61090 12639318 ~ 12640078 (+)
G183890 NA non-coding upstream 63632 12629289 ~ 12637536 (+)
G183868 NA non-coding upstream 196045 12504685 ~ 12505123 (+)
G183866 NA non-coding upstream 220639 12480307 ~ 12480529 (+)
G183825 NA non-coding upstream 522318 12174579 ~ 12178850 (+)
G183933 NA non-coding downstream 42842 12746084 ~ 12747667 (+)
G184000 phip non-coding downstream 467680 13170922 ~ 13172244 (+)
G184071 NA non-coding downstream 711998 13415240 ~ 13415570 (+)
G184074 NA non-coding downstream 730743 13433985 ~ 13434206 (+)
G184075 NA non-coding downstream 730970 13434212 ~ 13434504 (+)
ches1 foxn3 other upstream 831976 11764143 ~ 11869192 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 2034696 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 2301356 10236949 ~ 10399812 (+)
LOC120546402 NA other upstream 2588533 10111070 ~ 10112635 (+)
il17a/f3 NA other upstream 3098820 9595376 ~ 9602348 (+)
bcl11bb LOC103368061 other downstream 3976 12707218 ~ 12739384 (+)
LOC120546167 NA other downstream 243757 12946999 ~ 13008411 (+)
G183994 phip other downstream 442233 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 764993 13468235 ~ 13474159 (+)
LOC120546742 plcb1 other downstream 1321242 14024484 ~ 14140769 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000324_00440312_00447668 CCNK coding CI01000324 null 440312 ~ 447915 (+)