rhov (rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886)


Basic Information

Item Value
gene id rhov
gene name rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15660573 ~ 15663661 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU249859
ttctttcttttcttggtGGGTGTGTCTATGCAAATCACAACCTGTAGCACAAACTTCCTCTAAAAACGTGCCCGGCCCCACACATGTCGCCCGTCAGTCAGAACAGGATAGGCAGCCTGCTGGTATGTGACAGACTCTACCAAGCTGACTCTCAGTAGTCTCTCAGTCAGAGATCAGTAAGGAGGCGAGTCTGCATTCACAAGTTTTATGTTCGGCTCGACATGCCACCTCGAATGGATTACTTTTACCACGAATCCCGAGTCCCTTCCAATTGCGGGCTGACCCGGGAAGATGAGCTGGAGCCCGGGGTCATCAGCTGTATGCTGGTCGGAGACGGAGCCGTCGGGAAGACCAGCATGATTGTCAGCTACACCTCCAATGGATACCCGACAGAATACCAACAGACCGGCTTTGATGTCTTCTCTGGTCAGGTCCAAGTAGAAGGATCTCCAGTTAAAGTTCAGCTTCTGGACACTGCTGGACAGAGTTTGATGGATTCAGAGCTCTGTCCTATGCCCACACGGACGTCTTCATCCTGTGCTTCAGCATGGTCAACCCCACCTCGTTTCACAACATAACCAAGAAGTGGGTTCCCGAGATCCGGGCTCATAATCCGTCCTCGCCCATCATTCTTGTTGGGACTCAGTCGGACCTCTTGTTGGACGTGAACGTTCTCATCAACCTGGACAGATCTAATGTCAAACCTATTCTTAGCTCCCGGGCCCGGAGCATGGCGGAGAAGATCAGGGCTACAGACTATGTAGAGTGTTCGTCACTCACGCAAAAGAACTTGAAGGAGGCGTTTGATGCGGCCATCTTTGCtgccattaaaaacaaaacccgCAAGACTAAGAAGAGGAGGTTTTCTGACAGACGCACTAAAGCTTTCTCAAGGTGCAGCTGGAAGAAGTTCTTCTGCTTCATCTGAACTCATAAACAGACTGCTAACCCTGTGGGTTGTGGACTAaacttacatttattttaataatttgctTTTGTTGTCACAGTTCTGATCTGTGGCAGTTTAGCATCCTTCCCTGTTAAGTATTTGGCTCATTTTACTCTGGGATGCCAAATGGTGCAAGGGGAAACCAAACAGCTCAGTGAACATTGGGAACTAACCCCTGTGGAGGCAGCAGAGAGGATTCTGGGTCTTATTTCACACTCCAGCAGACAGAGTGTTGTTTACATTAAATTCAAATGTTTGATTGTTACAGGGTGATAGAAAACAACCTATGTGGCATATTaaatcaaagtgtgtgtgtatgctttaATGTGTATGCATCCCTGGCGAGCCACTTGAGAGAAGAAGGGCAGTGTATTGAGACTTTAAAGGAACATATCAATGTACAGTCACAGAGAGAAAGCCCAGGCCATCATGTAAATGTTGTGGATTTGCATGCTGAGCTTTGCTACCAGCTGCAGCCTTTAATGTAGacgagagagaaacagaaagtgTCCGGGGCTGTGTTTAAACTGATGGGCGTTAGCCACTTCTCTGTTGTATTCTTGCTGTCTGGCTACACCAGCCTATTTATATGCGACAGCTGCGAGTTCAGATTGCAGTGCGAGGTGCCACATTCTTACCTGTGTGTGAAAGCTCCCCTGGCTGCTTTGGGCTGGTTTTTTCTCACCTTTCAAGCTAATCGACTGAACATCGTATCGCCCCTGACATTTCTCTTTAATTGGAATTGTATCAACCGATTTAACATCTATGGAAACACAGCAGGATGAGAGTTGTGACAAATCAGAAACAAATGCATGTCTTAATTCTAGGATTGGCACAGGAACTTTCTGAAAATTCTCTTGTCTGAGGTGAAAGGTTGCATGGGAGCGGTACCCTTTGgctttttgtctctgtctcccttTAATCTGCATCTGAAAGCAAGCACTGCAGGGGTCTTAGCTTCCTCCCTGCGGATCCTCCCACCACCACCGTCAGCCTGGCTTTTTTAATTTACCCCTCTTTGTTTACATGCTCAATACACTCCTTATCTCCTCAAAAGCCTATAGTGTGTACAGAGTTAGAGGACGCTAAACAGCCTCTGCTTGAATGTAAGTGTAAGGTAATACACTTTTTCAAAGCCTTGTGTCTGTGATGTATGTGCTAAAGAAAATCTGATTTAGATTTTGCACTCCTGTGTGGCGATATCTGATGGATATACGAGTGACCAGAGCCAGGGATAGGCTTCACTATACTTCTTGTGGAAGTTTGCTTAATATATATGCTATTCTGTTTGTTAAAACAGGTCATTTGTCAAATGTATATGAAATATTAGACAAGACATGGATTTTAAATGCATTAATATACTCCACATatgttttgttacattttg
>XM_039782916.1
TCAGAACAGGATAGGCAGCCTGCTGGTATGTGACAGACTCTACCAAGCTGACTCTCAGTAGTCTCTCAGTCAGAGATCAGTAAGGAGGCGAGTCTGCATTCACAAGTTTTATGTTCGGCTCGACATGCCACCTCGAATGGATTACTTTTACCACGAATCCCGAGTCCCTTCCAATTGCGGGCTGACCCGGGAAGATGAGCTGGAGCCCGGGGTCATCAGCTGTATGCTGGTCGGAGACGGAGCCGTCGGGAAGACCAGCATGATTGTCAGCTACACCTCCAATGGATACCCGACAGAATACCAACAGACCGGCTTTGATGTCTTCTCTGGTCAGGTCCAAGTAGAAGGATCTCCAGTTAAAGTTCAGCTTCTGGACACTGCTGGACAGGAAGAGTTTGATGGATTCAGAGCTCTGTCCTATGCCCACACGGACGTCTTCATCCTGTGCTTCAGCATGGTCAACCCCACCTCGTTTCACAACATAACCAAGAAGTGGGTTCCCGAGATCCGGGCTCATAATCCGTCCTCGCCCATCATTCTTGTTGGGACTCAGTCGGACCTCTTGTTGGACGTGAACGTTCTCATCAACCTGGACAGATCTAATGTCAAACCTATTCTTAGCTCCCGGGCCCGGAGCATGGCGGAGAAGATCAGGGCTACAGACTATGTAGAGTGTTCGTCACTCACGCAAAAGAACTTGAAGGAGGCGTTTGATGCGGCCATCTTTGCtgccattaaaaacaaaacccgCAAGACTAAGAAGAGGAGGTTTTCTGACAGACGCACTAAAGCTTTCTCAAGGTGCAGCTGGAAGAAGTTCTTCTGCTTCATCTGAACTCATAAACAGACTGCTAACCCTGTGGGTTGTGGACTAaacttacatttattttaataatttgctTTTGTTGTCACAGTTCTGATCTGTGGCAGTTTAGCATCCTTCCCTGTTAAGTATTTGGCTCATTTTACTCTGGGATGCCAAATGGTGCAAGGGGAAACCAAACAGCTCAGTGAACATTGGGAACTAACCCCTGTGGAGGCAGCAGAGAGGATTCTGGGTCTTATTTCACACTCCAGCAGACAGAGTGTTGTTTACATTAAATTCAAATGTTTGATTGTTACAGGGTGATAGAAAACAACCTATGTGGCATATTaaatcaaagtgtgtgtgtatgctttaATGTGTATGCATCCCTGGCGAGCCACTTGAGAGAAGAAGGGCAGTGTATTGAGACTTTAAAGGAACATATCAATGTACAGTCACAGAGAGAAAGCCCAGGCCATCATGTAAATGTTGTGGATTTGCATGCTGAGCTTTGCTACCAGCTGCAGCCTTTAATGTAGacgagagagaaacagaaagtgTCCGGGGCTGTGTTTAAACTGATGGGCGTTAGCCACTTCTCTGTTGTATTCTTGCTGTCTGGCTACACCAGCCTATTTATATGCGACAGCTGCGAGTTCAGATTGCAGTGCGAGGTGCCACATTCTTACCTGTGTGTGAAAGCTCCCCTGGCTGCTTTGGGCTGGTTTTTTCTCACCTTTCAAGCTAATCGACTGAACATCGTATCGCCCCTGACATTTCTCTTTAATTGGAATTGTATCAACCGATTTAACATCTATGGAAACACAGCAGGATGAGAGTTGTGACAAATCAGAAACAAATGCATGTCTTAATTCTAGGATTGGCACAGGAACTTTCTGAAAATTCTCTTGTCTGAGGTGAAAGGTTGCATGGGAGCGGTACCCTTTGgctttttgtctctgtctcccttTAATCTGCATCTGAAAGCAAGCACTGCAGGGGTCTTAGCTTCCTCCCTGCGGATCCTCCCACCACCACCGTCAGCCTGGCTTTTTTAATTTACCCCTCTTTGTTTACATGCTCAATACACTCCTTATCTCCTCAAAAGCCTATAGTGTGTACAGAGTTAGAGGACGCTAAACAGCCTCTGCTTGAATGTAAGTGTAAGGTAATACACTTTTTCAAAGCCTTGTGTCTGTGATGTATGTGCTAAAGAAAATCTGATTTAGATTTTGCACTCCTGTGTGGCGATATCTGATGGATATACGAGTGACCAGAGCCAGGGATAGGCTTCACTATACTTCTTGTGGAAGTTTGCTTAATATATATGCTATTCTGTTTGTTAAAACAGGTCATTTGTCAAATGTATATGAAATATTAGACAAGACATGGATTTTAAATGCATTAATATACTCCACATatgttttgttacattttgtataATCTTGATTTACCATCTCCTTCTCTAACCTGTGTTTTTTAACACTTGGGAGTGATGTGATGCAAATAAACAAAGTGCAAATTA

Function

symbol description
rhov Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and protein localization to adherens junction. Is expressed in several structures, including blastoderm; notochord; segmental plate; solid lens vesicle; and yolk syncytial layer. Orthologous to human RHOV (ras homolog family member V).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoV-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249859 True 2336 TUCP 0.45 3 15660573 15663574
XM_039782916.1 False 2330 mRNA 0.45 3 15660670 15663661

Neighbor

gene id symbol gene type direction distance location
chac1 chac1 coding upstream 56407 15602335 ~ 15604166 (+)
dll4 dll4,LOC104955063 coding upstream 62680 15588083 ~ 15597893 (+)
vrtn vrtn coding upstream 359866 15296281 ~ 15300707 (+)
slc25a29 LOC103369942,LOC106518591 coding upstream 373722 15277585 ~ 15286851 (+)
ppp2r5cb LOC103369946,LOC101473650,LOC100694131,LOC104924693 coding upstream 486991 15142703 ~ 15173582 (+)
zfyve1 LOC100698556 coding downstream 16800 15680461 ~ 15687727 (+)
stx7l stx7 coding downstream 66386 15730047 ~ 15738980 (+)
ccn2a ctgf coding downstream 108999 15772660 ~ 15776217 (+)
tmem200a tmem200a coding downstream 190149 15853810 ~ 15877749 (+)
itpkb itpkb coding downstream 322422 15986083 ~ 16014859 (+)
G184509 vps18 non-coding upstream 5053 15654846 ~ 15655520 (+)
G184481 NA non-coding upstream 167046 15493204 ~ 15493527 (+)
G184474 NA non-coding upstream 181493 15478491 ~ 15479080 (+)
G184465 NA non-coding upstream 337685 15322575 ~ 15322888 (+)
G184463 NA non-coding upstream 338451 15321746 ~ 15322122 (+)
G184508 pigh non-coding downstream 15336 15678997 ~ 15680159 (+)
G184521 NA non-coding downstream 113568 15777229 ~ 15780546 (+)
G184526 sel1l,LOC104966051,LOC107585782,LOC107721334 non-coding downstream 134154 15797815 ~ 15798794 (+)
G184561 NA non-coding downstream 225704 15889365 ~ 15889585 (+)
G184540 NA non-coding downstream 262410 15926071 ~ 15927662 (+)
G184458 NA other upstream 341737 15301925 ~ 15318836 (+)
LOC120546207 NA other upstream 367321 15289674 ~ 15293252 (+)
hsp90aa1.1 LOC103369948 other upstream 525713 15129476 ~ 15134860 (+)
G184258 NA other upstream 1131203 14525136 ~ 14529370 (+)
LOC120546619 LOC103359912,LOC102080314 other upstream 1235709 14393440 ~ 14424864 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other downstream 31283 15694944 ~ 15719632 (+)
LOC120546249 NA other downstream 250925 15914586 ~ 15968123 (+)
nkain2 nkain2 other downstream 584433 16248094 ~ 16391851 (+)
cenpw NA other downstream 715818 16379479 ~ 16381856 (+)
G184628 LOC104949332,LOC106633454,LOC101477798,LOC102792991 other downstream 735777 16399438 ~ 16404077 (+)

Expression


Co-expression Network