LOC120546941


Basic Information

Item Value
gene id LOC120546941
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17686696 ~ 17688280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250762
TGGTGATCTACAGCCCTGACAAAATATCGGTCACCAAAGGCAGCAGCTTCTCCATCACATGCTCCATTCACTCTACATATCCGGGAGGTTTCTTCTATCTGACAAAGTCTAACAAGAGCACAGTCGCTTCATTGCCAGCATATGGCCACTCTATCTTCTACATGACCCACTTTGAATTCCCTGCTCTCGATTATACAAACCAAGGAGAGTATAACTGTGTCTACGGGCTTAACATTTCCTCAATGTCCTTCTGTTCTGTTCCCTCCAAGTCACTTCAAGTAACTGTAATTGCCACTTCATCCTCTTCAGTGGTCTCAGGACTAGTGGGTGGGCTGGTGGTGTTGGTACTCGTGCTGGTTATAGGTTACCTGGTCTGGAGAAGAAGAAGGCGAGGTGCTGAATCCACAATACCCAAGTGAATGAGAATGCACAGAGTTGCAGCCCAGAACACAACAATGCTGATGTTGATAACTCTGTTGAGAGGGTCCCTGAAGACCTGGCTGGGAGAGTGTGTTATGAGCTTGAACCGCTCGTTCTCTCGTGATAACAAAAGGCTTCAAGGAATCACCTATGTCATGCGATTTCACTAAATTCAAAGAGTAACATAACACCAGGGTGAaaaatagagctgggcaatatatcgatattatatcgatatcgtgatatgaggctagatatcgtcttagattttggatatcgtaatatgacacaagtgttgtcttttcatggttttaaaggctgcattacagta
>XR_005637002.1
tacttctgtgaatATCAGAAGAAATTACCCAATCAAGTCATCTATTATCCTCAAGGAAATACTGCTGAGCTCTCTGTCAAAGTGAATTTGGAGAAGCCCAGAATCTCCCTGACATCTCCGCATGAAATGGTGATCTACAGCCCTGACAAAATATCGGTCACCAAAGGCAGCAGCTTCTCCATCACATGCTCCATTCACTCTACATATCCGGGAGGTTTCTTCTATCTGACAAAGTCTAACAAGAGCACAGTCGCTTCATTGCCAGCATATGGCCACTCTATCTTCTACATGACCCACTTTGAATTCCCTGCTCTCGATTATACAAACCAAGGAGAGTATAACTGTGTCTACGGGCTTAACATTTCCTCAATGTCCTTCTGTTCTGTTCCCTCCAAGTCACTTCAAGTAACTGTAATTGCCACTTCATCCTCTTCAGTGGTCTCAGGACTAGTGGGTGGGCTGGTGGTGTTGGTACTCGTGCTGGTTATAGGTTACCTGGTCTGGAGAAGAAGAAGGCGAGGTGCTGGTAAGTGGCACACTTCTTATTTTACAAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250762 True 751 lncRNA 0.44 3 17686942 17688280
XR_005637002.1 False 556 lncRNA 0.45 3 17686696 17687464

Neighbor

gene id symbol gene type direction distance location
LOC120546414 NA coding upstream 197 17671513 ~ 17686499 (+)
tcf21 tcf21,LOC102777283 coding upstream 32335 17652502 ~ 17654361 (+)
slc2a12 slc2a12 coding upstream 63584 17615329 ~ 17623112 (+)
sgk1 sgk1 coding upstream 90642 17560853 ~ 17596054 (+)
aldh8a1 aldh8a1 coding upstream 171113 17506954 ~ 17515583 (+)
eya4 eya4 coding downstream 21519 17709799 ~ 17758414 (+)
lca5 LOC104965141 coding downstream 103573 17791853 ~ 17799948 (+)
fam167ab fam167a,LOC102799533 coding downstream 111810 17800090 ~ 17808692 (+)
mtmr9 mtmr9 coding downstream 200361 17888641 ~ 17904513 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding downstream 218461 17906741 ~ 17913030 (+)
LOC120546942 NA non-coding upstream 15219 17669166 ~ 17671477 (+)
G185134 NA non-coding upstream 18976 17633119 ~ 17667720 (+)
G185136 NA non-coding upstream 24883 17640961 ~ 17661813 (+)
LOC120546270 NA non-coding upstream 32335 17636952 ~ 17654361 (+)
G185112 NA non-coding upstream 132787 17553442 ~ 17553909 (+)
G185155 rps12 non-coding downstream 72396 17760676 ~ 17763736 (+)
G185156 NA non-coding downstream 75689 17763969 ~ 17764792 (+)
G185254 NA non-coding downstream 369131 18057411 ~ 18059367 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding downstream 414745 18103025 ~ 18104904 (+)
LOC120546825 NA non-coding downstream 467690 18155970 ~ 18164654 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 298 17669172 ~ 17686398 (+)
map7b map7,LOC107374525 other upstream 311637 17341837 ~ 17375059 (+)
G184996 sec63 other upstream 390995 17293654 ~ 17295701 (+)
G184859 NA other upstream 853382 16825694 ~ 16833314 (+)
si:ch211-57i17.1 LOC103363786 other upstream 906761 16765545 ~ 16779935 (+)
G185237 NA other downstream 228573 17916853 ~ 17917248 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other downstream 332676 18020956 ~ 18054926 (+)
znf513a znf513,LOC102795572 other downstream 438851 18127131 ~ 18140260 (+)
ylpm1 ylpm1 other downstream 910085 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 1017576 18705856 ~ 18711994 (+)

Expression


Co-expression Network