LOC120546825


Basic Information

Item Value
gene id LOC120546825
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18155970 ~ 18164654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU250952
TGTGGAGGAGAGCACTTTGAGAAGAACATGATACAATTCAAAGTCATGATGCGAGCAGGTGGTGGGTACCTTTTCCGTAGGAGTATGTGAAATTCAGAGCTCCGCAAGCTGTTAATGGATACATAAGGCAGCTCAAACTCCTGCAGCTTCCGCacaactgagagagagacacagaaaaacagagaaacagagaaagagagttaGGAACAAGTGCAGCGCCAGTTAAGTCCCAAGGACATTTGGATAATGACGGCAACAACAAACAATGAGGGATGGGAGAACTCCATTTGCACAGGTCCCAGCAGGGTAAAATGTTTTGGATTCCCCCAAGTTCACCCGGCAGCATATCAGCCTGGAACGGATTTGGCGGGAGGACGAGTGGGGGAGCAATTGGCAGGTGGAAGACGAGAGAAGAGAACCTTTGGGACTGAGGGGGGATTTGACCTGACAGGGCTGTGATGAAATGGAAAAAAGGGATAAACTGGAAAACTGAAATCTCTTGATGTGGAAAGCTGTATGCATGTGCCACTGTGGAATTCCTTGTAAATGCACATGCAAATATTCTACTATGATTTGCATTCACACAGTTACTTATGAGTAAAAATGAGTACAAACAAATATATCAACATCGTATGATAAAGTAATGGAGCACAGAATTCTAACTTCAAAACAATACCTTGAAAAATACCATGGGGATAATATATGGGCTAGCTTGTATCCTTTGCCTTCCCTTGTTGATTTGCCTCACCAAGGAAGCTCTGCGCTTGTCATCTTTGCTGAGCTAACACCATAACAAAACCCGCAGATTTTAATATTCAACCAGAGCAAATAAGACGAGTGAAGACAGCACTGAAATTGAGCGGGAGGAGGCAGGTTTTTTAGATATGTAATCGAAAATACTATATTTTTGACACCACAAGTCTGCTGAAATAGTCTTTCTGGAAAAATTACATCCTCAATCAGTTAGCCTGTGAATGCAAGACCACAACAAATACATTGTCAACCTGAAAACACTGCACACAGCCTGTTGTGAAAGCTCACACCACTTGAAACACTGCACAACCGTTTAATGAACCagccaacaaacacacagagcctGGCTCTCACTGAGCTTCTAGCAGCTAATAAATAAACTAGGCATTCTAGCCAGAGATACAGTAGGAACTCCAATACAAGAGACAACTCTCAGGGGGCGATGCAGTCCTTTTTAATTAAACTACAGTAGATCCCCAAAAAGTAACCCCTGCCAGAGCTTTACTGTTTCTTGTGGAGAAtttagagagaaagaaaactAACATTAAATGCGTGTAATTGCAGCACGTAATTTACCCAGAAAGGTATTCTTCAGTGCAACATTATCGATTGATGATTAATGTGTGTCTattttagtgtgtgta
>TU250953
TGTGGAGGAGAGCACTTTGAGAAGAACATGATACAATTCAAAGTCATGATGCGAGCAGGTGGTGGGTACCTTTTCCGTAGGAGTATGTGAAATTCAGAGCTCCGCAAGCTGTTAATGGATACATAAGGCAGCTCAAACTCCTGCAGCTTCCGCacaactgagagagagacacagaaaaacagagaaacagagaaagagagttaGGAACAAGTGCAGCGCCAGTTAAGTCCCAAGGACATTTGGATAATGACGGCAACAACAAACAATGAGGGATGGGAGAACTCCATTTGCACAGGTCCCAGCAGGGTAAAATGTTTTGGCAGGGGGTCTTCCAAGTACATCCCTACCACTGAAGGTGCAGATGAAATGACAACACCGGGTGGTAACTCATCTACTATTCTGCACCTGCTGTCCCCGCAGTACATAAGGCGCTGGAGGGGGAAGGGGGAGAAACAAACACAGCCTCTAAtgagagaggaagacagaggaggagaagcagaATGGGTGTGACGTGGCTGCAGATGGATGAATCTGTCCATGAAGGTTATTGGATTAACAGCCCTCCTGGCAACGCAGGTCACAGCTTGAATGATGACGAATCAACCTAGCTAGTCTGAATACGTCATTGACAAACCATTCATTTGAAATAGCCTTTTCTGTCAGGCAGCAACAAGACACCATGAGTTTGTGTTCTTACAGCATCGTTCACTTCAGCTAATATTTGCTTGCTTTTTTAGCACTGCAAAAAATGCAAATTTTGTGGCATGACTCATAATGTGgcttactttttctttttcgtaTGATATAATGATCCAAAAGGATCCAGctcccacacacacaatgcaactATGAGGCAATATTTGGCAAAAATGTTGCTTTCCACTTTGTGTCTGATGTAATAATTTTTATAAAGTTTCTACGTACAAGCCAAACTTAATCTGACACATTGAAACAACAACATTACAAGTAGAGATGACACAACCCAAGATAAGGGCACATGCTGCCACAAACCGAATACATCGACCTCACTCTACCACATTACCAAAAGTAATTACAAGCCGGGCAGAAATTACTGCACCAGCCTTTTGGATCAAGGAGCACGCCCTGCCCCCTCATAGGCCTGTTAACCATGTGACGCAACAGAGAACAAACAGCCTAATGCAGGTACAGTAGATACAAAAAAACCCTACCAACCTGCTGTGCTTTCCTTAAGAAGCTGTTGAACATCTCACTGGCTCCAAGCAAGGGATCCTGacgcactgtaaaaaaaaaaaatgaaggagGAGATAAATGAGCAACATGAGTACAATATTAGTCACATCTCACTGTTCAGTGAAACGGAAGGAGCAGAGAtatgttatgtttttaactgacaaCTCAGCAATTAGTTAAGGGTCTTTTAGTGGATGTTATGTTAACATAAACCTCCTCAGGGGAGGACATTTCCCAATTGTTGATAATTTTCCTCTTATCACACAATTAAATTTTCTTCCTGGAATGGGTCTGACCCAAGACACTCAATTAACTGTGAATATTACAAGCCAGTTTCATCATAATGCAGTCCTCAGATTTGGTAAACAAAAGACAAGATGGACAACTCTCTAGTACTTTGGTGTATTTGGAGAATTATCTGCATGATAtgactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacgtgcatgcatgtgtgtcagcctgccacacacacacacactctaactgTCCTATTACAAATTAGTCTAACCCTTTGACAAAGTTCTGAGCAGTCTGCGTCAGAGCAGATTGTGTTTGTGGCAGTTCATTTTCCATAACTATGTAAAAAGCCATGATGTAACCAAGTGAACTTGTAGCCAAGAACACCCTGTGTGCGTATGCTCCCAGACTATGAGCAAATACATACTTGAACAACGCTTCCTTGTTCTGCTGCAACTGCCAGTGCTTGAGAGGATTAAAACAAACCCTCTGCATTGCTGCCAGTTCCACTTtcttgtgtgtgcgcgtgcatgtgcgtgtgcagAAAGTTCACCCTCAACCTGTTTACAAAATGTGGGCAATATGCTGAAAACCTCCTGAGAAAAACACCAATTGGGTTcttaaacatttatgacttgaaaacaatttggtttttttttaaatgtcacaaaGGCATGTTTAAGAAAGCTAGTCTCTTTCCTGGTCTAAACACCacaaaaatatgaattattCTTTATAGCATTCCCTTTTCAATTCAGAGTAAAGCTAAGAATCCCTAGAGGTGGCACTTCATCACTAGAGACTCCAAACCTATTAAACTTTTAAACACCCTACGAGGTTTGAAATCCTGagtagggattttttttttttcatca
>XR_005636952.1
acaactgagagagagacacagaaaaacagagaaacagagaaagagagttaGGAACAAGTGCAGCGCCAGTTAAGTCCCAAGGACATTTGGATAATGACGGCAACAACAAACAATGAGGGATGGGAGAACTCCATTTGCACAGGTCCCAGCAGGGTAAAATGTTTTGGATTCCCCCAAGTTCACCCGGCAGCATATCAGCCTGGAACGGATTTGGCGGGAGGACGAGTGGGGGAGCAATTGGCAGGTGGAAGACGAGAGAAGAGAACCTTTGGGACTGAGGGGGGATTTGACCTGACAGGGCTGTGATGAAATGGAAAAAAGGGATAAACTGGAAAACTGAAATCTCTTGATGTGGAAAGCTGTATGCATGTGCCACTGTGGAATTCCTTGTAAATGCACATGCAAATATTCTACTATGATTTGCATTCACACAGTTACTTATGAGTAAAAATGAGTACAAACAAATATATCAACATCGTATGATAAAGTAATGGAGCACAGAATTCTAACTTCAAAACAATACCTTGAAAAATACCATGGGGATAATATATGGGCTAGCTTGTATCCTTTGCCTTCCCTTGTTGATTTGCCTCACCAAGGAAGCTCTGCGCTTGTCATCTTTGCTGAGCTAACACCATAACAAAACCCGCAGATTTTAATATTCAACCAGAGCAAATAAGACGAGTGAAGACAGCACTGAAATTGAGCGGGAGGAGGCAGGTTTTTTAGATATGTAATCGAAAATACTATATTTTTGACACCACAAGTCTGCTGAAATAGTCTTTCTGGAAAAATTACATCCTCAATCAGTTAGCCTGTGAATGCAAGACCACAACAAATACATTGTCAACCTGAAAACACTGCACACAGCCTGTTGTGAAAGCTCACACCACTTGAAACACTGCACAACCGTTTAATGAACCagccaacaaacacacagagcctGGCTCTCACTGAGCTTCTAGCAGCTAATAAATAAACTAGGCATTCTAGCCAGAGATACAGTAGGAACTCCAATACAAGAGACAACTCTCAGGGGGCGATGCAGTCCTTTTTAATTAAACTACAGTAGATCCCCAAAAAGTAACCCCTGCCAGAGCTTTACTGTTTCTTGTGGAGAAtttagagagaaagaaaactAACATTAAATGCGTGTAATTGCAGCACGTAATTTACCCAGAAAGGTATTCTTCAGTGCAACATTATCGATTGATGATTAATGTGTGTCTattttagtgtgtgtatgtggatttctttttttttttagaactctggaaagtgtctttgagtgttGTAAAAAGCGCTATATagataaaatgcattattattattattattattattattaacataaaaaaatgttataGCTAATAATTCCAACTCCTAGTTCcttttgtttctctgtttgtaaaaataatttgtccTCTAAGTTTGATTTGTGTGTGCCTAGCTGGCCCGAGGAAGTAGATTATATTGACTTTATTTTATCAAAGCGCTCTGTGTCCAGCACATTCAGTTTGCTTCAATAAACAAGACTGGTTACCTGATGGTTTCCAGTTGTAGTGTGTCAAAATAAA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU250952 False 1397 lncRNA 0.42 2 18155970 18158108
TU250953 True 2400 lncRNA 0.42 2 18155970 18164654
XR_005636952.1 False 1577 lncRNA 0.39 2 18156123 18158441

Neighbor

gene id symbol gene type direction distance location
blk blk,LOC102291483,LOC102797075 coding upstream 144019 18002070 ~ 18011951 (+)
LOC120546768 NA coding upstream 161972 17976113 ~ 17993998 (+)
sox7 sox7 coding upstream 200372 17952559 ~ 17955598 (+)
pinx1 LOC102299901 coding upstream 206525 17919578 ~ 17949445 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding upstream 242940 17906741 ~ 17913030 (+)
atraid atraid coding downstream 8515 18173169 ~ 18177104 (+)
nme6 nme6 coding downstream 29829 18194483 ~ 18198503 (+)
si:ch211-142k18.1 LOC104964445 coding downstream 109175 18273829 ~ 18282702 (+)
chrna2b LOC104964447,LOC101470861 coding downstream 119246 18283900 ~ 18293835 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding downstream 182582 18347236 ~ 18358913 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding upstream 51066 18103025 ~ 18104904 (+)
G185254 NA non-coding upstream 96603 18057411 ~ 18059367 (+)
G185156 NA non-coding upstream 391178 17763969 ~ 17764792 (+)
G185155 rps12 non-coding upstream 392234 17760676 ~ 17763736 (+)
LOC120546941 NA non-coding upstream 467690 17686696 ~ 17688280 (+)
G185323 NA non-coding downstream 16478 18181132 ~ 18181983 (+)
G185353 NA non-coding downstream 133209 18297863 ~ 18298151 (+)
G185354 NA non-coding downstream 134659 18299313 ~ 18300098 (+)
G185356 NA non-coding downstream 137526 18302180 ~ 18302519 (+)
G185357 NA non-coding downstream 138044 18302698 ~ 18302965 (+)
znf513a znf513,LOC102795572 other upstream 15710 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 101044 18020956 ~ 18054926 (+)
G185237 NA other upstream 238722 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 462336 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 469572 17669172 ~ 17686398 (+)
ylpm1 ylpm1 other downstream 433711 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 541202 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 1039500 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 1189962 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 1203066 19367720 ~ 19389223 (+)

Expression


Co-expression Network