LOC120546242


Basic Information

Item Value
gene id LOC120546242
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20261785 ~ 20359609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU251786
GAAATCCTGTTCATAAGTCTGTCTTTGTGAACAGCCCAGGTCTGCCTCCAGACTCACACTCATCCCAGGCAGAGATGTCACTCCACAATGAACTCTTGAATGCTTGAAGGAAGTGAGGAGCAAGATTAACTACACTGGAATCCTGGCTGCGGCTGAGCTGAATCCTCGCACCATGTCTGCTTTAGTCAGCACTGCCTCCAGTGCATGTCTCCCAGTCACGCACCAACAACCCCTGACTGAAACGACTGCCATCTCCATTACTTCAAGatacacagaggcacacaaagCAAGTCTAATGCTTTAAGGTCTACCAAGCCTGGCTGCCTGAGTAAAGCTCCTTTTAGTCCGTGCTGTAACTTCTACCCATCTGCAAGTGACCCAGTTGCCCCAGAGCACCCCCTACAGATGTGATGTAAAGGAAAGAGAATTATTGCAAGTGTAGCATGTGTCTCAGTAGCGGAGGAC
>XR_005636839.1
TCAGCCTCTTCCTGTCTGCACAAGGAAATCCTGTTCATAAGTCTGTCTTTGTGAACAGCCCAGGTCTGCCTCCAGACTCACACTCATCCCAGGCAGAGATGTCACTCCACAATGAACTCTTGAATGCTTGAAGGAAGTGAGGAGCAAGATTAACTACACTGGAATCCTGGCTGCGGCTGAGCTGAATCCTCGCACCATGTCTGCTTTAGTCAGCACTGCCTCCAGTGCATGTCTCCCAGTCACGCACCAACAACCCCTGACTGAAACGACTGCCATCTCCATTACTTCAAGatacacagaggcacacaaagCAAGTCTAATGCTTTAAGGTCTACCAAGCCTGGCTGCCTGAGTAAAGCTCCTTTTAGTCCGTGCTGTAACTTCTACCCATCTGCAAGTGACCCAGTTGCCCCAGAGCACCCCCTACAGATGTGATGTAAAGGTTGGTTCTCTACCTCAGCAGGCTGTGGAAGTACTCCTATCCCTAAATATTGCCAGGCAAATGATCTGTAATTTGAATTGTAAATAAGATGTCTATCCCCTTCAAATGAAGATAAATGATGTAGGCATTAAGGTGAAATCTGTACCATAAATCAACTTTAAACAGTGTTTGCTCCTTCTTGGTATTTGTGCGCCCGTTTGTACTTCTGTGGGAGTATCACAGTGTGCCAGGGGTTACACACTCACCCCACCCCCGCCTGTCATGGCATGTGATGTTTTTCTAATTACTCTGAAAAATGACGGAGTGCATCTCCATCCGAGTGTGACTACGCCACCACCGGCTGCCGAGACATACATCACTCTAATTGGCTCAAATAGCTCTAATATATGCCACCATGTTGCCTTCATGGATCAGCAGCGTCGCCttttgaaaatcaatacagGAACAGCATAATGGGACACAAGAGTGTTACGTTCAATAAGCAGCCCAATGACTTTGGCATTTCAGTGTTAATCCTTTTGCTATCCAGAAGTAGTGAGAGCGGTAATTTGCGGTAATTGGAGGAACATTAAGGCCTGAGATTGAGACAGGAAGGGCTGAAATATGTCAGGATGTGTTTTGTCAGTGGTATGAGTGCATGTGTCCAgtggaatatttttttaattataggtATACTGATGCCTGGAAATATGACAGAACAGAGAGTGGGAGGTTGATGCTGCAGGGCACTGATGCTTAATCATTGACATTTGGCACAATTTTCCAATGTGTGGGTGATATGGTGACCTGTAATCTCTGGTTTTGTTGTGCATATTTTGCTGCACTAGTTTTGCATAGGTCATATAACAGTGATTGGTGTTACACTGCAAAAGAAAATTTCAcctgtaaaaaacaatatttcaaa
>XR_005636840.1
TCAGCCTCTTCCTGTCTGCACAAGGAAATCCTGTTCATAAGTCTGTCTTTGTGAACAGCCCAGGTCTGCCTCCAGACTCACACTCATCCCAGGCAGAGATGTCACTCCACAATGAACTCTTGAATGCTTGAAGGAAGTGAGGAGCAAGATTAACTACACTGGAATCCTGGCTGCGGCTGAGCTGAATCCTCGCACCATGTCTGCTTTAGTCAGCACTGCCTCCAGTGCATGTCTCCCAGTCACGCACCAACAACCCCTGACTGAAACGACTGCCATCTCCATTACTTCAAGatacacagaggcacacaaagCAAGTCTAATGCTTTAAGGTCTACCAAGCCTGGCTGCCTGAGTAAAGCTCCTTTTAGTCCGTGCTGTAACTTCTACCCATCTGCAAGTGACCCAGTTGCCCCAGAGCACCCCCTACAGATGTGATGTAAAGGAAAGAGAATTATTGCAAGTGTAGCATGTGTCTCAGTAGCGGAGGACC
>XR_005636841.1
TCAGCCTCTTCCTGTCTGCACAAGGAAATCCTGTTCATAAGTCTGTCTTTGTGAACAGCCCAGGTCTGCCTCCAGACTCACACTCATCCCAGGCAGAGATGTCACTCCACAATGAACTCTTGAATGCTTGAAGGAAGTGAGGAGCAAGATTAACTACACTGGAATCCTGGCTGCGGCTGAGCTGAATCCTCGCACCATGTCTGCTTTAGTCAGCACTGCCTCCAGTGCATGTCTCCCAGTCACGCACCAACAACCCCTGACTGAAACGACTGCCATCTCCATTACTTCAAGatacacagaggcacacaaagCAAGTCTAATGCTTTAAGGTCTACCAAGCCTGGCTGCCTGAGTAAAGCTCCTTTTAGTCCGTGCTGTAACTTCTACCCATCTGCAAGTGACCCAGTTGCCCCAGAGCACCCCCTACAGATGTGATGTAAAGATGGCGTTGGGGAACTCGCCCTGAGGCAGCTGCCAGCCTTGCTTCCACCTACAACATACAAAGTTGGCCGTGGCCGTGGTGCGAAAGTGGTATGATATGAACTTCAACAGTTCCACtgagagatggtccgataccattttttgcttcccgataccgattccgataccctGAACATGGGTATTGGCCGATATTGAGTACCGATCAGATACCAGGGTGTCATATAtttgattatgttttaacaagtctggctcaggttaaactctttgtgaaacatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251786 False 465 lncRNA 0.49 5 20261809 20288755
XR_005636839.1 True 1346 lncRNA 0.44 4 20261785 20286864
XR_005636840.1 False 490 lncRNA 0.50 5 20261785 20288756
XR_005636841.1 False 717 lncRNA 0.49 5 20261785 20359609

Neighbor

gene id symbol gene type direction distance location
slc22a16 slc22a16 coding upstream 268899 19977864 ~ 19992886 (+)
cdc40 cdc40,LOC103135076 coding upstream 317754 19919473 ~ 19944031 (+)
LOC120546286 gpr6,LOC104945012 coding upstream 424387 19834485 ~ 19837398 (+)
fig4a fig4,LOC102794534 coding upstream 430942 19745177 ~ 19830843 (+)
si:dkey-119f1.1 smc6 coding upstream 530561 19712664 ~ 19731224 (+)
LOC120546927 LOC104961664 coding downstream 257641 20617250 ~ 20622631 (+)
epm2a epm2a coding downstream 269232 20628841 ~ 20638714 (+)
LOC120547338 NA coding downstream 518871 20878480 ~ 20881587 (+)
mthfd1l mthfd1l coding downstream 531799 20891408 ~ 20928761 (+)
akap12b akap12,LOC102289546,LOC102211499,LOC102799877 coding downstream 577909 20937518 ~ 20980163 (+)
G185869 mettl24 non-coding upstream 281695 19945093 ~ 19980090 (+)
LOC120546509 NA non-coding upstream 288442 19950611 ~ 19973343 (+)
G185827 NA non-coding upstream 410074 19850174 ~ 19851711 (+)
G185804 NA non-coding upstream 522495 19739040 ~ 19739290 (+)
G185802 NA non-coding upstream 523521 19737994 ~ 19738264 (+)
LOC120546929 NA non-coding downstream 266939 20626548 ~ 20628265 (+)
G186025 NA non-coding downstream 333561 20693170 ~ 20702644 (+)
G186035 utrn non-coding downstream 386708 20746317 ~ 20758806 (+)
LOC120546176 NA non-coding downstream 629696 20989305 ~ 20991418 (+)
G186088 LOC103355013 non-coding downstream 660212 21019821 ~ 21023878 (+)
kif25 LOC104961976,LOC100703631 other upstream 401568 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 613629 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 641002 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 719953 19429595 ~ 19541832 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other upstream 872562 19367720 ~ 19389223 (+)
gtf2h5 gtf2h5 other downstream 811339 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 1585134 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 1626170 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 1921358 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 2448270 22807879 ~ 22810520 (+)

Expression


Co-expression Network