LOC120546175


Basic Information

Item Value
gene id LOC120546175
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21151444 ~ 21153184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU252044
CGCACAGAAAACTCAACCAGGTGCTCCCAACACAATGAGACTTAGCAAACTTGTTTGCTTGATAGGCTAGCAGACGGTAAAACCCAGAAGCTTGGGCGGGAATGCATGCCTCTGCCACCCATGCCGAAGAAAACAGGTTCAGCTCTCGTCTCTCAGGAGATGGATGCCAACCAGAACACATCAAAGAAAATGTCACGTCAAATTAGTTTCCACGTGCCCCCTGTAAATAAGCTAATATGACCATGTACTCAGAGGAGAACATATAGCATAAAGAgtgatttgtgaaaaaagaagaaaaaaaaaaacatagctgATGTCCAAGCAAATCCATTCACACCAAAGGCAGCATTTCAGACTTGTAGTTCATTTCTACTCAAGGCTACAAGAAAAAGATACCCCATGTAATTCAGTAGCCATTAACACGGtctatgtgtctctgtgatTAGGGAAAATGTTAAGGTAGTATAGTTCCCACAGACCCCCAGTCCAACCTTCTGTGAGGATGACCACGGCATAAGACTTGTTTTATCTGAAATGCCACAAGACATCAACAATAAAGCAACTGTTGTTAAAGGGACTGCTTGGTGTAATTAGATAATGTGGACACACCCCCAACAGCAGGACCCAGGCAGAAGAGTATTTTTGGAACAAACCACACTTGGGACAAAGCTGCCATTTTTACAGCTCATGTCATTTACTGCCTTGTAGTGTTAAATGAGCGTCCTGAATGTATCTAAAGCAGTGGACTCCCTTATGGCTACATATTCTCTATAGTTATACCTTGTAATTAGTTTGCAAAGATATCTGGAAATGCAAACAATTATTGTGTATATAAAAGTGTATATAAAATATGTTGCAGCTTCCCAAAACAGGGATGATTGTAATGTATCCTTATACATAAATAATGGAAacactttcca
>TU252046
GGATTACACACAGCCTACGCACAGAAAACTCAACCAGGTGCTCCCAACACAATGAGACTTAGCAAACTTGTTTGCTTGATAGGCTAGCAGACGGTAAAACCCAGAAGCTTGGGCGGGAATGCATGCCTCTGCCACCCATGCCGAAGAAAACAGGTTCAGCTCTCGTCTCTCAGGAGATGGATGCCAACCAGAACACATCAAAGAAAATGTCACGTCAAATTAGTTTCCACGTGCCCCCTGTAAATAAGCTAATATGACCATGTACTCAGAGGAGAACATATAGCATAAAGAgtgatttgtgaaaaaagaagaaaaaaaaaaacatagctgATGTCCAAGCAAATCCATTCACACCAAAGGCAGCATTTCAGACTTGTAGTTCATTTCTACTCAAGGCTACAAGAAAAAGATACCCCATGTAATTCAGTAGCCATTAACACGGtctatgtgtctctgtgatTAGGGAAAATGTTAAGGTAGTATAGTTCCCACAGACCCCCAGTCCAACCTTCTGTGAGGATGACCACGGCATAAGACTTGTTTTATCTGAAATGCCACAAGACATCAACAATAAAGCAACTGTTGTTAAAGGGACTGCTTGGTGTAATTAGATAATGTGGACACACCCCCAACAGCAGGACCCAGGCAGAAGAGTATTTTTGGAACAAACCACACTTGGGACAAAGCTGCCATTTTTACAGCTCATGTCATTTACTGCCTTGTAGTGTTAAATGAGCGTCCTGAATGTATCTAAAGCAGTGGACTCCCTTATGGCTACATATTCTCTATAGTTATACCTTGTAATTAGTTTGCAAAGATATCTGGAAATGCAAACAATTATTGTGTATATAAAAGTGTATATAAAATATGTTGCAGCTTCCCAAAACAGGGATGATTGTAATGTATCCTTATACATAAATAATGGAAacactttcca
>XR_005636823.1
CCTACGCACAGAAAACTCAACCAGGTGCTCCCAACACAATGAGACTTAGCAAACTTGTTTGCTTGATAGGCTAGCAGACGGTAAAACCCAGAAGCTTGGGCGGGAATGCATGCCTCTGCCACCCATGCCGAAGAAAACAGGTTCAGCTCTCGTCTCTCAGGAGATGGATGCCAACCAGAACACATCAAAGAAAATGTCACGTCAAATTAGTTTCCACGTGCCCCCTGTAAATAAGCTAATATGACCATGTACTCAGAGGAGAACATATAGCATAAAGAgtgatttgtgaaaaaagaagaaaaaaaaaaacatagctgATGTCCAAGCAAATCCATTCACACCAAAGGCAGCATTTCAGACTTGTAGTTCATTTCTACTCAAGGCTACAAGAAAAAGATACCCCATGTAATTCAGTAGCCATTAACACGGtctatgtgtctctgtgatTAGGGAAAATGTTAAGGTAGTATAGTTCCCACAGACCCCCAGTCCAACCTTCTGTGAGGATGACCACGGCATAAGACTTGTTTTATCTGAAATGCCACAAGACATCAACAATAAAGCAACTGTTGTTAAAGGGACTGCTTGGTGTAATTAGATAATGTGGACACACCCCCAACAGCAGGACCCAGGCAGAAGAGTATTTTTGGAACAAACCACACTTGGGACAAAGCTGCCATTTTTACAGCTCATGTCATTTACTGCCTTGTAGTGTTAAATGAGCGTCCTGAATGTATCTAAAGCAGTGGACTCCCTTATGGCTACATATTCTCTATAGTTATACCTTGTAATTAGTTTGCAAAGATATCTGGAAATGCAAACAATTATTGTGTATATAAAAGTGTATATAAAATATGTTGCAGCTTCCCAAAACAGGGATGATTGTAATGTATCCTTATACATAAATAATGGAAacactttccaccactgcaa

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU252044 False 920 lncRNA 0.40 2 21151461 21153175
TU252046 True 937 lncRNA 0.40 2 21151444 21153175
XR_005636823.1 False 933 lncRNA 0.41 2 21151457 21153184

Neighbor

gene id symbol gene type direction distance location
esr1 esr1 coding upstream 139208 20999574 ~ 21012236 (+)
armt1 armt1 coding upstream 154819 20992466 ~ 20996625 (+)
akap12b akap12,LOC102289546,LOC102211499,LOC102799877 coding upstream 171281 20937518 ~ 20980163 (+)
mthfd1l mthfd1l coding upstream 222683 20891408 ~ 20928761 (+)
LOC120547338 NA coding upstream 269857 20878480 ~ 20881587 (+)
myct1a myct1,LOC103355010 coding downstream 6772 21159956 ~ 21162886 (+)
serac1 serac1,LOC102777075 coding downstream 10034 21163218 ~ 21170361 (+)
dynlt1b dynlt1 coding downstream 24292 21177476 ~ 21178916 (+)
mrps10 mrps10 coding downstream 71367 21224551 ~ 21226805 (+)
ppil6 ppil6 coding downstream 94479 21247663 ~ 21251189 (+)
G186106 NA non-coding upstream 89468 21060757 ~ 21061976 (+)
G186094 syne1,LOC103355013,LOC106946714 non-coding upstream 118262 21032641 ~ 21033182 (+)
G186088 LOC103355013 non-coding upstream 127566 21019821 ~ 21023878 (+)
LOC120546176 NA non-coding upstream 160026 20989305 ~ 20991418 (+)
G186035 utrn non-coding upstream 392638 20746317 ~ 20758806 (+)
G186210 NA non-coding downstream 194760 21347944 ~ 21348581 (+)
G186220 NA non-coding downstream 321368 21474552 ~ 21475304 (+)
G186297 NA non-coding downstream 387404 21540588 ~ 21542781 (+)
LOC120546760 NA non-coding downstream 592397 21745581 ~ 21746554 (+)
LOC120547080 NA non-coding downstream 679764 21832948 ~ 21833782 (+)
kif25 LOC104961976,LOC100703631 other upstream 1291227 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 1503288 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 1530661 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 1609612 19429595 ~ 19541832 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other upstream 1762221 19367720 ~ 19389223 (+)
gtf2h5 gtf2h5 other downstream 17764 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 791559 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 832595 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 1127783 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1654695 22807879 ~ 22810520 (+)

Expression


Co-expression Network