G186220


Basic Information

Item Value
gene id G186220
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21474552 ~ 21475304 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU252179
gggtgtggccttgaccaactgccactttgcttgtttgaaagccatgatgtctctctttctcatgggttggccaaattctctgggcgggcaaagcagagaaaggggaggtaaccttgctccttatgacctcataaggagcaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcgccatttctagccactgggggaccataggcaggctgggggaacgcatattaatgttaaaaaacctcataaagtgaagttttcatgccatgggaccttttaaagcaGGATGTATCGTGATGACCAAGTCAGACTTTATGCGATTAGTTAAGGTTTAATGGATAATCAATAAATGATtgttaatgttaaatgtttcCCAATTCGCTTGAATCCAGTTACATAGAAAATGCCATTTCAGGCCTGAATAGCCTCTCTGAAAGCAGAACAGTATGCTTGTTCCATACTTTTTCAGAATTTAGTGAATTTTCATTAACTAAGCATTTGTAAATTAGTATCACAATATGACTTTACGTAAAGGGACAAGTCAACCAGGTAACTTGAAATAAATTCCAAAGTAATAATTAAGCAATGATAAAGACTTAATGTGTGCAACACCAAAGCTTGTAAATGTGACAAAGTGAAAAGTGAGGACTGTTGGGTCATGCATCAGCAACATGTAAATGTTTGCATCGGACTACCagtctgatttaaaaaaaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU252179 True 753 lncRNA 0.40 1 21474552 21475304

Neighbor

gene id symbol gene type direction distance location
snx3 snx3 coding upstream 530 21457561 ~ 21474022 (+)
sesn1 sesn1,LOC102782344 coding upstream 151466 21274857 ~ 21323086 (+)
cd164 NA coding upstream 207979 21251980 ~ 21266573 (+)
ppil6 ppil6 coding upstream 223363 21247663 ~ 21251189 (+)
mrps10 mrps10 coding upstream 247747 21224551 ~ 21226805 (+)
ostm1 ostm1 coding downstream 26447 21501751 ~ 21506824 (+)
drc1 NA coding downstream 37270 21512574 ~ 21525302 (+)
fndc1 fndc1 coding downstream 142035 21617339 ~ 21653568 (+)
LOC120546740 wtap coding downstream 205218 21680522 ~ 21686917 (+)
acat2 acat2,LOC102788057 coding downstream 211976 21687280 ~ 21693126 (+)
G186210 NA non-coding upstream 125971 21347944 ~ 21348581 (+)
LOC120546175 NA non-coding upstream 321368 21151444 ~ 21153184 (+)
G186106 NA non-coding upstream 412576 21060757 ~ 21061976 (+)
G186094 syne1,LOC103355013,LOC106946714 non-coding upstream 441370 21032641 ~ 21033182 (+)
G186088 LOC103355013 non-coding upstream 450674 21019821 ~ 21023878 (+)
G186297 NA non-coding downstream 65284 21540588 ~ 21542781 (+)
LOC120546760 NA non-coding downstream 270277 21745581 ~ 21746554 (+)
LOC120547080 NA non-coding downstream 357644 21832948 ~ 21833782 (+)
G186452 NA non-coding downstream 819138 22294442 ~ 22294697 (+)
G186506 NA non-coding downstream 1060355 22535659 ~ 22537716 (+)
gtf2h5 gtf2h5 other upstream 301913 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 1614335 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 1826396 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 1853769 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 1932720 19429595 ~ 19541832 (+)
erh erh,LOC100699790,LOC101174968 other downstream 469439 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 510475 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 805663 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1332575 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 1486729 22962033 ~ 22966010 (+)

Expression


Co-expression Network