prdm1c (prdm1,LOC104943060)


Basic Information

Item Value
gene id prdm1c
gene name prdm1,LOC104943060
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22234807 ~ 22244092 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU252557
GGTCTTAACAGCATTCTACCTCATTCATACCCATTGTACAGAGATCAACTGAAACCTCACTTAACACTCTCATCTAATTTACTGCCTTATGCACACTTCTTCCAACCTCTGGCCAACAGACACAAAGACTTGACACTTGCACCATCCGACACCAAACAAGACCTAATTCTTTCACCAACCAATGAGCACAGAGACAGAACAAACTACCTCAGAATCCCCTCAGATACCCTCAGAGATTTCACGCACTCTCCTCCCAGCAATGTCCAAGCCGACTTCACTATACCCACCACGTCCAGTGCTTCATCCATTGTCGACTCACTCCGCAGAGCACTGCCCTCTCTTGCGCCTGGAGGACGCTCACCA
>TU252558
AGGTGTGCCATAAGCGATTCAGTAGCACTAGTAACTTGAAGACCCACCAGCGTCTACACTCAGGTGAAAGGCCCTACCAGTGCAAGCTCTGCCCAGCCCGCTTTACTCAATTCGTCCATCTCAAGCTCCACAAACGTCTCCACACTGGAGAACGGCCACACAGGTGTCCTTGCTGCCCCTGTGCCTATCTCCACTACTGCAGCCTCCAGGTGCACCTCCAAGGCTTCTGCCCTCTCTCCCCTGCGGCATCTCACAGACACTCACCGGAGGAGCTACACCGAGTCAATGCGGAGATTGAGAGGTTTGATATTAGCGAGGCGGCAGAGCAGCTAGAGGCCATGGCTGCAGAGGCAGAGTTGGACAAGGGGAATGTTACTGATTTAATAAAGAAGATGGAGACTCATTCCTCTGGCCCCCACGATGATGAAATGGGGGAGACTGAGCTGAGCACCTACACATCAGCAAAGGAGTGTTCTGCCGTTCAGCTGCATCATGCCAGCCCTCTACCTCTGCATTCAACCAGCATCAAGCTGGAGTCAGGCTGCATATCAGAACCCTAAGACAGCCTTGCTAATCCAGCCATATAATCCTTACAGGTCAACTCAGCAGCTGTCTGTTACTGCCCTATTTGAAGCAAAGCCTTATCTCAATCACGGATTGCCTAGTCTATGCTCTACACAGGCTGTAGCATCTGAAGAATCAAGACTTTATCATCACGGCCTGGGACCATTGGCTTGATTGATTTACATCATTGTTAATTTATTCTGTTGC
>XM_039781599.1
GAGTGTTCAGTTGTGCGGTCAGTCACACACAGGTTCACAGGATACTGAGGTTGGGTGAGAGActaggagagagaaagagagagaaagagaggacaaGAGACAGAGGACAGCCACTAGTTGCTTATAGACTCTCAAGCTTTCAAGGAGAGCACTGATAGCCTACCATATGTGTGGCTCCTCCCAAGGCTTCACAGCCTCCTCCTCTCCGTGCACCACAGCCATGTTAACCCCAGAAAGCTCACCGCAAAGCACAGGGGTCATCGCAGCAGCGATGCCAGAGACACAGGATGCAGACATGACATCACTGAGCGAGGCAAACTTTGAGGAGAAGTGCACTTATATCGTCAAGGACCAACATCTGGAGGAAGAGTCCGAAAACAACAGCAAGACACGAGCTGAGAGATCCTTACCCAGAAACCTGGCGCTGAAACGCTGCCACGACTCGGCAGAGGTGCTTGGGGTGACCAGTAAGGAACTGATTCCTAAGGGAACACGTTTTGGCCCTCTGGTGGGGGAAAGCTACACCAATGAAACACTGTTGAAAGACGCTGACAGGAAGTACTTCTGGAGGGTCTTCTCGGAGGGGCGTTTACACCACATCCTGGATGGTTTGATCGAGGAGCGGAGCAATTGGATGCGTTATGTCAACCCGGCCTGTACTGTGGAGGAGCAGAACCTGGTTGCCTGCCAGAGTGGTTTGGACATCTACTTCTACACCATCAAACCACTTCAGCCGGGCCAGGAGCTCCTGGTGTGGTACTGCCCTGAATTCGCCCAGCGCTGTAACTACCCTCCACTGGGCCAACTCGCTATGGACAGTGTTGATCAGAGTCAAGCTcagaaaaagacaacagaaAAACGAGGACACAGTGTCTCTGAAATCCTCCGAGACGAGCCGTCAAAAGCCCTGACTACCTCCCCCACACGTCTGGATAGTCCCTTGTCTCATGCCAACCTCCCAGCAGTTTTTCCCCTGTGCCCCCGTGTTGTCTACCCAATCCAGCCCAACTCAGAATCCATCCATGGCCACAGACATGCAACTCTACCACATCTGCCATCCGGTAGCCATCCAGCTGCCAAAAGACCAGCTCTAAGTGGTCCTGTCCCTTCCAGTTTGCATTTCACCTTTCAGCACAGTCAAGGCCCTGTTATAGCCAAACCTTACCAAGAGCCTTCTGTGCCTGATCGAGTTCATCCTGCACTGAGGCATTCTCCCTATCTACTGCCTAACTACTCGCTCGGTCTTAACAGCATTCTACCTCATTCATACCCATTGTACAGAGATCAACTGAAACCTCACTTAACACTCTCATCTAATTTACTGCCTTATGCACACTTCTTCCAACCTCTGGCCAACAGACACAAAGACTTGACACTTGCACCATCCGACACCAAACAAGACCTAATTCTTTCACCAACCAATGAGCACAGAGACAGAACAAACTACCTCAGAATCCCCTCAGATACCCTCAGAGATTTCACGCACTCTCCTCCCAGCAATGTCCAAGCCGACTTCACTATACCCACCACGTCCAGTGCTTCATCCATTGTCGACTCACTCCGCAGAGCACTGCCCTCTCTTGCGCCTGGAGGACGCTCACCACCAGTGGGCATGGCTGCCTTTTCAGACCCTTCCAAACCCACCTCTGCCACTCAGAGAAATACTGAGGATGCAATGGACCTCAGGAAGATCACACGAGGTGGGCAGGTTATTGGCTACAAGACCCTGTCTTACCCCCTCACCAGGCAGAATGGAAAGATTCGGTATGAGTGCAATGTCTGTGGAAAGGTCTTTGGGCAGCTGTCCAACCTCAAGGTCCATCTGCGAGTGCACAGCGGAGAGCGTCCCTTCAGGTGTCAGACCTGCAATAAGAACTTCACTCAGCTGGCCCATCTGCAGAAACACTACCTGGTTCATACCGGAGAGAAGCCTCATGAATGCAAGGTGTGCCATAAGCGATTCAGTAGCACTAGTAACTTGAAGACCCACCAGCGTCTACACTCAGGTGAAAGGCCCTACCAGTGCAAGCTCTGCCCAGCCCGCTTTACTCAATTCGTCCATCTCAAGCTCCACAAACGTCTCCACACTGGAGAACGGCCACACAGGTGTCCTTGCTGCCCCTGTGCCTATCTCCACTACTGCAGCCTCCAGGTGCACCTCCAAGGCTTCTGCCCTCTCTCCCCTGCGGCATCTCACAGACACTCACCGGAGGAGCTACACCGAGTCAATGCGGAGATTGAGAGGTTTGATATTAGCGAGGCGGCAGAGCAGCTAGAGGCCATGGCTGCAGAGGCAGAGTTGGACAAGGGGAATGTTACTGATTTAATAAAGAAGATGGAGACTCATTCCTCTGGCCCCCACGATGATGAAATGGGGGAGACTGAGCTGAGCACCTACACATCAGCAAAGGAGTGTTCTGCCGTTCAGCTGCATCATGCCAGCCCTCTACCTCTGCATTCAACCAGCATCAAGCTGGAGTCAGGCTGCATATCAGAACCCTAAGACAGCCTTGCTAATCCAGCCATATAATCCTTACAGGTCAACTCAGCAGCTGTCTGTTACTGCCCTATTTGAAGCAAAGCCTTATCTCAATCACGGATTGCCTAGTCTATGCTCTACACAGGCTGTAGCATCTGAAGAATCAAGACTTTATCATCACGGCCTGGGACCATTGGCTTGATTGATTTACATCATTGTTAATTTATTCTGTTGCTAACATTAatcttaaatgtaaatgtggGACATTTACTgcaattttgtttttgtatctcTGGAACATCTTCATGGAACAACAACTAAATGTGATTTTGCATAAACAAAGCTTGTGGTTAATTGCGTGagtgtttctgtttatttgtttgtgcgTATTTAAGCCACCTATTTAAAGTGTCAGTTACTGTACAGGCATGACTATGTATTGGTGTTGGAGTGTTGAAGTGTTAACACAGATGAAACCTCACTTGTTTGCATGTAATGTATATACtcgcctttgtgtgtgtgtagtgtgctAATGTGGTGACGTAGATAAACATCCTGTTATGAGTCCTGGGACACTAACCACCAGTAAGTGTCAACACTTCaccctggaaaaaaaaaaccaacaaaattattttttactcTCAATAAGATCCGGCTGCTAATTTTGTACATGTACTTCCATATTTTAGTTTCAGTATTAATCAGATGACAGACA

Function

symbol description
prdm1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: PR domain zinc finger protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252557 False 363 lncRNA 0.48 1 22237065 22237427
TU252558 False 771 lncRNA 0.51 1 22235287 22236057
XM_039781599.1 True 3194 mRNA 0.49 7 22234807 22244092

Neighbor

gene id symbol gene type direction distance location
xkr5a LOC103457463,LOC106957042,LOC103134374 coding downstream 733 22228358 ~ 22234074 (-)
tram2 tram2 coding downstream 7266 22221238 ~ 22227541 (-)
mrpl19 mrpl19 coding downstream 102959 22128276 ~ 22131848 (-)
mycn mycn coding downstream 165683 22064777 ~ 22069124 (-)
LOC120546935 plekhg1 coding downstream 313514 21848463 ~ 21921293 (-)
LOC120546833 grik2,LOC101474374,LOC100702227 coding upstream 62703 22306795 ~ 22368427 (-)
ripply2 NA coding upstream 227516 22471608 ~ 22472162 (-)
hpcal1 hpcal1,LOC100696840,LOC102224670,LOC108411356 coding upstream 376836 22620928 ~ 22635743 (-)
LOC120546324 rhob,LOC104947257 coding upstream 472861 22716953 ~ 22719945 (-)
LOC120547061 NA coding upstream 554730 22798822 ~ 22805865 (-)
LOC120546956 NA non-coding downstream 50210 22183287 ~ 22184597 (-)
G186393 NA non-coding downstream 265039 21969471 ~ 21969768 (-)
G186378 erh,LOC100699790,LOC101174968 non-coding downstream 287829 21944700 ~ 21946978 (-)
G186342 NA non-coding downstream 391188 21723623 ~ 21843619 (-)
LOC120546762 NA non-coding downstream 474678 21758487 ~ 21760129 (-)
G186457 lin28b non-coding upstream 50888 22294980 ~ 22301585 (-)
LOC120547100 NA non-coding upstream 149508 22393600 ~ 22398063 (-)
LOC120546234 NA non-coding upstream 219306 22463398 ~ 22467657 (-)
LOC120546369 NA non-coding upstream 241493 22485585 ~ 22489315 (-)
G186596 NA non-coding upstream 496706 22740798 ~ 22743604 (-)
armc2 armc2 other downstream 886158 21326256 ~ 21348649 (-)
si:ch211-51e12.7 NA other downstream 998278 21226966 ~ 21236529 (-)
LOC120547366 NA other downstream 1059279 21175338 ~ 21175528 (-)
LOC120547346 NA other downstream 1061801 21172841 ~ 21173006 (-)
syne1a syne1,LOC102291171,LOC103355013,LOC102194633 other downstream 1079995 21012392 ~ 21154812 (-)
LOC120546367 LOC103362666,LOC100697912,LOC102794903,LOC104963850 other upstream 271524 22515616 ~ 22524246 (-)
G186507 NA other upstream 291562 22535654 ~ 22537723 (-)
G186527 LOC103362669 other upstream 334513 22578605 ~ 22579683 (-)
LOC120546217 LOC103362670,LOC104956173,LOC101470376,LOC102796272 other upstream 361407 22605499 ~ 22608325 (-)
G186636 kcns3,LOC103372653 other upstream 564495 22808587 ~ 22810573 (-)

Expression


Co-expression Network