rsph3 (rsph3)


Basic Information

Item Value
gene id rsph3
gene name rsph3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23192638 ~ 23196996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU252966
GCTTGACGGTTCATTATTGACCTTGGAAAGAAAATCTCTTTTTTCTGAAGCTTTCATCCACATGctgtggatgttttttttttcattagtttcaTGGCTACCTTGTCAAACAGATTACTGTAAAACCCACAGCAATGGGTCCAGTCATAATATCAGAGGTGGCCATGTTAGAGGCCCTGAGCCATTCTTACAAAAAACACAGTCACCTTTTATTTTCTTCTAGTTCTTAAAACAGTGAAGTTTCCGTCATTGCAAAACCAATAAAACTGGTATGGAAAGA
>XM_039780917.1
CCGttacattagctagctacacttccTAGAGACGGTTGCTACAACAGTTCATTGCGTCCTCTCCTCTAGGTTGATAGCCGCTATACAGTAGCTTTGAAAGTAGCCTGTCCGCTACCAAACATTCACGTTAGCTAAATATTACTCTGCAACTGCGATACTTGATGGTTTCTGATAGTTTCTGATAGAAAAATGGCTTTTGTTTCACAAAGCCAGAGAGCTCCAAACGAAAGTTACACCTTCGCAAGTCGCCCCAGACCTGTTGAGAATCGCTCCAAATACAGAGAGCCTCCGTCTGAACAGACACACAGCAATTATGGAAACATTATGTATGACCGTCGTGTTGTCAGAGGAAACACTTACGCCCAACTAATCATACCAACTACGGCTCAGCCAGACCCTGTTGAAGCACAACGACAACAGGAGAATAGGAGGAGAGCCATTGCTCGAAAACGAGCCAGGGAGCAGTTCAGACCAAGTACTCCGGAGGCCCTGCAGGGCAGAAAACACATTGATGTGCAAACAGAGCTGTATCTCGAAGAATTGAGTGATGTTATAGTGGCTACAGATGTTCAGTGCCAGACTGATGCTTTCCTGGACAAACCTGCAACCCCGCTCTTCATACCTGCTAAATCTGGCAAAGATGTTGAAACACAGATAGAGGAGGGAGAGCTGTTTGACTTTGACAGGGAGGTGCAGCCAGTGTTGGAGGTCCTGGTGGGTAAGACAATAGAACAGTCCCTAGAGGAggtgatggaggaggaggagctggcCTCTCTGAGGGCCCAGCAGAGGGCCTTCGAAGAGCTCCGAAATAATGAGCTGGCAGAGGTGCTGCGGCTTCAGGAGCAGGAGAGACGCCACAGTGAGGAGAAAGGGCGTAGAATTGCCCAGCAAAAGGAGgtgctgaaaaaagaaaaagagacagcagAGAAGATTGCGGCCCGGGCGTACACCCAGCAGTACTTGGCTGACCTCCTACCTGCAGTGTTTACCTCGCTGAGAAGCCATGGCTACTTTTATGACCCGGTGGAGAAAGATATTGAGAATAATTTCTTCCCATGGCTGATGGCTGAGGTTAACAACAGTTTGGAGAAGAGATACACAACAAGAGAGCTGCTGGACActatCATCCATGATGTCACCCAGAAAAGACTGAAGATGTTCAAAGAGCCGGAGATGCAGTAATAATGATTCACTGAGAAAGGCCAAGGGCATGGATGCAttctcaaaaataaaaatacatttcactGACTTAATTAACACAAGTTTTCCCTTTGAGATCACAATACTAGTGTATGTTGTTCCAGTGTAAGTAATTTGTTTCAACCTTAAAATTAATGTAATGATTCTAATGATTAGTAGGGAATAtagtgaaaacattttttgcaAACGTTTGCACTCGTTCTTGTATATCATAAATCAGGGATTTCTGTTAGTACAGTATGAAGAGATTGTGTAACTTTTCTGTGAAAGTTGACTGTAACAGTTTCTTCAGTGTTTgaaggcagttttttttttttttttgcaaaatattttaaagattgGTAGGCCTACAAAATTAGCAACCCTGGCATTAGCATTTTTATCATGTTGTGATCCAAATGTTGTTATATCAGAGTTTTGCTGCAGTTAATGTATAAAGATTGAAAATTCAAAAACCTGGTGCTATGAAGTAGATATGTCATTGAGCTTGACGGTTCATTATTGACCTTGGAAAGAAAATCTCTTTTTTCTGAAGCTTTCATCCACATGctgtggatgttttttttttcattagtttcaTGGCTACCTTGTCAAACAGATTACTGTAAAACCCACAGCAATGGGTCCAGTCATAATATCAGAGGTGGCCATGTTAGAGGCCCTGAGCCATTCTTACAAAAAACACAGTCACCTTTTATTTTCTTCTAGTTCTTAAAACAGTGAAGTTTCCGTCATTGCAAAACCAATAAAACTGGTATGGAAAGAT

Function

symbol description
rsph3 Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 32. Orthologous to human RSPH3 (radial spoke head 3).

NR:

description
radial spoke head protein 3 homolog

GO: NA

KEGG:

id description
K23965 RSPH3; radial spoke head protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU252966 False 280 lncRNA 0.38 1 23196716 23196995
XM_039780917.1 True 1969 mRNA 0.43 8 23192638 23196996

Neighbor

gene id symbol gene type direction distance location
tagapb NA coding upstream 5912 23160027 ~ 23186726 (+)
opn8c NA coding upstream 41256 23144908 ~ 23151382 (+)
rhag LOC100174886 coding upstream 233379 22945509 ~ 22959259 (+)
nrbp1 LOC100699297,LOC102778226,LOC102314540,LOC103372645 coding upstream 290149 22892172 ~ 22902489 (+)
znf106b NA coding upstream 317424 22860808 ~ 22875214 (+)
ezrb ezr,LOC103355633 coding downstream 1838 23198834 ~ 23237172 (+)
LOC120546473 NA coding downstream 50003 23246999 ~ 23253449 (+)
kcnk3a kcnk3,LOC102784354 coding downstream 110727 23307723 ~ 23348356 (+)
slc35f6 slc35f6 coding downstream 174888 23371884 ~ 23381214 (+)
hlx1 hlx,LOC102784911 coding downstream 194210 23391206 ~ 23395336 (+)
G186726 NA non-coding upstream 48348 23143959 ~ 23144290 (+)
G186725 NA non-coding upstream 48990 23143430 ~ 23143648 (+)
G186697 NA non-coding upstream 173838 23016957 ~ 23018800 (+)
G186641 NA non-coding upstream 344964 22846872 ~ 22847674 (+)
G186622 NA non-coding upstream 392580 22799735 ~ 22800058 (+)
G186747 NA non-coding downstream 71802 23268798 ~ 23275460 (+)
G186842 NA non-coding downstream 223903 23420899 ~ 23432383 (+)
G186843 NA non-coding downstream 238140 23435136 ~ 23435351 (+)
G186841 NA non-coding downstream 241244 23438240 ~ 23439520 (+)
LOC120546283 NA non-coding downstream 278703 23475699 ~ 23506564 (+)
ppp2r5a ppp2r5a other upstream 49998 23095912 ~ 23142640 (+)
dtl dtl other upstream 97133 23087820 ~ 23095505 (+)
si:ch211-22i13.2 NA other upstream 226628 22962033 ~ 22966010 (+)
kcns3b kcns3,LOC103372653 other upstream 382118 22807879 ~ 22810520 (+)
lin28b lin28b other upstream 891053 22280967 ~ 22301585 (+)
tcte1 NA other downstream 362502 23559498 ~ 23564429 (+)
nfkbie nfkbie other downstream 381382 23578378 ~ 23589689 (+)
G186975 NA other downstream 882607 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 948001 24144997 ~ 24146762 (+)
extl3 extl3 other downstream 958491 24155487 ~ 24187864 (+)

Expression


Co-expression Network