LOC120546873


Basic Information

Item Value
gene id LOC120546873
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29940206 ~ 30035201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU255056
GTTCAGAGACTTACTACAAAGAAGAGAGACACGATGGCTGAATTCAGATGGACTAAAACCTCTTTATTTCTGATACTGGTACTTCAGTTTACAGGTGGGGatacaaaaccaaaacaaacaacaactgaAAGCAGCATTAAATCAGGAACCAATGATGCTTCACCAAACCTACAAGGTTGGGGGAGGATCCTCTTTGTGCCCGTGGGTTTAGCAGCTCTCATAATAATTGTTGTGGCGGTCAACATGTGGACGAGAGCTAAAGAGAAGAAAACACAGACGGAGG
>XR_005636972.1
attaactctctctcctcttttaaaTCTGAAAGCTCCATCTAAAACATATCTCTGATGTAGTCCTTCTTTCTCCAGGTTGGGGGAGGATCCTCTTTGTGCCCGTGGGTTTAGCAGCTCTCATAATAATTGTTGTGGCGGTCAACATGTGGACGAGAGCTAAAGAGAAGAAAACACAGACGGAGGAAATCGCTGTGCGTTATGATGTAGATGATGATACAGTGAACTATGAAAACATCAGATCTCCTGATGGAGTTTGACCAACACTTCTGCCTCCATCAGACTCCACTGATCAACTCGTCACCTTTTACTGGACTAGTTCAAGACTGGAAATAACTAAAAGAATCATCAAGGCTTATTTCATTTTAGTCTGATGTATTTTCCTGCatcaattgtaaaaaaaaaatgttctcatCTGCAGCCAGTTGAGAACAGCAGCTGGATTTGAACTTCATTTAACTCTTGTTAACTTCCTGAAATAGTCTTCCAGTTGTGGATTTCAGAGCTGATTTTAAGATGTACTGCTTGTTGTTGAAGCTCCAGCAGcttgagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtacatgcgtgtgtgtgaatgtgtcccTAATAGATTCAGTAACAGTCTTCTCTTCATTCTGTGATTACAATATTGTAGTAAACTTGGGTGGTGGTTGTCTGTGAGGACTGTGACAACTAATCAAAGACTAATAAGATCCACCTGATCCACATTGTTGCTGCTGTCAGAGACTCTGCTAGTTGATCagtctcagctggacttgatTGCTGAGACACTGAACTGATAAAGTAGAGCCGAGCGAGTGGCATGGTGTTCTGGGGGAGGGGAGCATGTTTCTGGTTGTCAGGTTAGGGTTGTTTGCACGACCAAGCCACTGGTATTGCACTCACAGGATGGGGGTCTGTTCACAGCCGGTTAGGGCTGCCGGCGGTGAAGACAGAAAGACTAGGAATAGAGTTCCTGCGCTAGGGGCCGATGACAGTGAGGGACCGGGGGAACTAGGAGTGCTGCCTGTTCTCCAGCTCTGTttgatagtctatatccttgacgttccacttccaggattgcttcGGGACCGCAGGATGCATATATTTATGCCGATTTCTGTTTctttccgctttctttttttgttggaattttaaactccggtggatttctgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagactatctgtccaatcagagttttctctcgcacgactattttgcaaaGGCTCCGTACAGAGTTTAGCTCCGCCCATAACGATTCTGATTAAAGAAATGCcactaaaccagagcacgttttcctcccatccccgaatgctatgtggagtagccagaccgtCCTTCAGGGCAcattggaggagggtctggcaaagcgagactacggTTTGTGGACATCTGACACGCTGTCAGCCGCTCTGTTGCTCCAGCGCTGGACAGACCTCACCCCCAGGGGATCCGATCGCATATGAGCCGGTTCGGACCAGTGTCTAGTTTTGTCTGTAGGCCTATTTACTGTTTATATATGTACAATATGAGTGGGTTTTAAAGCTGCAGCAACAGTAACTGACTGGTGGTAAGCTGTGTGGGAGTTAGCTGATTGGTACGGGTGGATACAAGCCTGTCTAGCCCAGGTTAATTAAATGGGGGGCCGATAGTGTAAGTGATAGCCTAGTGTGTTGATCTGAGGTGAAAACAAGTGTGCAGTATCCTGCATTCAGTTCATTGTGGTTGAATGCGCTTTGCAAAGTTTGGCGTGTGTATTTGCATGTTGATTGCTGTGTGATTACCTGcat
>XR_005636973.1
atatcacATCACAACAGTGTGTTGAGTTGTGTTCATCTGTTCATGTGAggacacaataacaacaacaacaataacaacaacaactgaaaGCAGCATTAAATCAGGAACCAATTATGCTTCACCAAAACTACAAGGTTGGGGGAGGATCCTCTTTGTGCCCGTGGGTTTAGCAGCTCTCATAATAATTGTTGTGGCGGTCAACATGTGGACGAGAGCTAAAGAGAAGAAAACACAGACGGAGGAAATCGCTGTGCGTTATGATGTAGATGATGATACAGTGAACTATGAAAACATCAGATCTCCTGATGGAGTTTGACCAACACTTCTGCCTCCATCAGACTCCACTGATCAACTCGTCACCTTTTACTGGACTAGTTCAAGACTGGAAATAACTAAAAGAATCATCAAGGCTTATTTCATTTTAGTCTGATGTATTTTCCTGCatcaattgtaaaaaaaaaatgttctcatCTGCAGCCAGTTGAGAACAGCAGCTGGATTTGAACTTCATTTAACTCTTGTTAACTTCCTGAAATAGTCTTCCAGTTGTGGATTTCAGAGCTGATTTTAAGATGTACTGCTTGTTGTTGAAGCTCCAGCAGcttgagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtacatgcgtgtgtgtgaatgtgtcccTAATAGATTCAGTAACAGTCTTCTCTTCATTCTGTGATTACAATATTGTAGTAAACTTGGGTGGTGGTTGTCTGTGAGGACTGTGACAACTAATCAAAGACTAATAAGATCCACCTGATCCACATTGTTGCTGCTGTCAGAGACTCTGCTAGTTGATCagtctcagctggacttgatTGCTGAGACACTGAACTGATAAAGTAGAGCCGAGCGAGTGGCATGGTGTTCTGGGGGAGGGGAGCATGTTTCTGGTTGTCAGGTTAGGGTTGTTTGCACGACCAAGCCACTGGTATTGCACTCACAGGATGGGGGTCTGTTCACAGCCGGTTAGGGCTGCCGGCGGTGAAGACAGAAAGACTAGGAATAGAGTTCCTGCGCTAGGGGCCGATGACAGTGAGGGACCGGGGGAACTAGGAGTGCTGCCTGTTCTCCAGCTCTGTttgatagtctatatccttgacgttccacttccaggattgcttcGGGACCGCAGGATGCATATATTTATGCCGATTTCTGTTTctttccgctttctttttttgttggaattttaaactccggtggatttctgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagactatctgtccaatcagagttttctctcgcacgactattttgcaaaGGCTCCGTACAGAGTTTAGCTCCGCCCATAACGATTCTGATTAAAGAAATGCcactaaaccagagcacgttttcctcccatccccgaatgctatgtggagtagccagaccgtCCTTCAGGGCAcattggaggagggtctggcaaagcgagactacggTTTGTGGACATCTGACACGCTGTCAGCCGCTCTGTTGCTCCAGCGCTGGACAGACCTCACCCCCAGGGGATCCGATCGCATATGAGCCGGTTCGGACCAGTGTCTAGTTTTGTCTGTAGGCCTATTTACTGTTTATATATGTACAATATGAGTGGGTTTTAAAGCTGCAGCAACAGTAACTGACTGGTGGTAAGCTGTGTGGGAGTTAGCTGATTGGTACGGGTGGATACAAGCCTGTCTAGCCCAGGTTAATTAAATGGGGGGCCGATAGTGTAAGTGATAGCCTAGTGTGTTGATCTGAGGTGAAAACAAGTGTGCAGTATCCTGCATTCAGTTCATTGTGGTTGAATGCGCTTTGCAAAGTTTGGCGTGTGTATTTGCATGTTGATTGCTGTGTGATTACCTGcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255056 False 283 lncRNA 0.43 4 29940206 30032961
XR_005636972.1 False 1893 lncRNA 0.46 3 30032681 30035201
XR_005636973.1 True 1952 lncRNA 0.46 4 30030900 30035201

Neighbor

gene id symbol gene type direction distance location
LOC120546867 NA coding upstream 57482 29876921 ~ 29882724 (+)
LOC120546866 LOC103363081,LOC108247050,LOC101159876,LOC107104461 coding upstream 64382 29861374 ~ 29875824 (+)
LOC120546480 NA coding upstream 569056 29315759 ~ 29371150 (+)
slc30a2 slc30a3,LOC102796772 coding upstream 719479 29196169 ~ 29220727 (+)
LOC120547117 gpr31,LOC104934219,LOC104957175 coding upstream 1015443 28917291 ~ 28924763 (+)
zfand3 zfand3,LOC104930467,LOC103365830,LOC101473384,LOC100698322,LOC106531772 coding downstream 64758 30099959 ~ 30115805 (+)
galnt14 galnt14,LOC103365833,LOC102790467 coding downstream 90262 30125463 ~ 30323344 (+)
trnat-ugu_4 NA coding downstream 338465 30373666 ~ 30373738 (+)
LOC120546909 NA coding downstream 634555 30669756 ~ 30673973 (+)
LOC120546901 NA coding downstream 779652 30814853 ~ 30821281 (+)
LOC120546875 NA non-coding upstream 4720 29934594 ~ 29935486 (+)
G188323 NA non-coding upstream 7346 29932550 ~ 29932860 (+)
LOC120546868 NA non-coding upstream 51322 29886864 ~ 29888884 (+)
LOC120546865 NA non-coding upstream 146527 29787961 ~ 29793679 (+)
LOC120546861 NA non-coding upstream 279471 29659256 ~ 29660735 (+)
LOC120546872 NA non-coding downstream 19157 30054358 ~ 30056424 (+)
G188294 NA non-coding downstream 35808 30071009 ~ 30072741 (+)
G188344 NA non-coding downstream 62525 30097726 ~ 30098348 (+)
G188345 NA non-coding downstream 63899 30099100 ~ 30099414 (+)
G188347 NA non-coding downstream 81509 30116710 ~ 30119041 (+)
G188296 LOC107662224,LOC107746645,LOC107750038,LOC107712283,LOC107663761 other upstream 294383 29645254 ~ 29645823 (+)
G188268 fabp7,LOC105924611,LOC105419070,LOC101079341,LOC102793361,LOC107727581 other upstream 476332 29461849 ~ 29463874 (+)
G188207 clvs2,LOC107675107 other upstream 519479 29419376 ~ 29420727 (+)
si:ch211-245h14.1 NA other upstream 627842 29292705 ~ 29312364 (+)
G188167 ucn other upstream 803289 29134171 ~ 29136917 (+)
btbd9 btbd9 other downstream 49347 30084548 ~ 30097239 (+)
angel2 NA other downstream 289771 30324972 ~ 30336202 (+)
G188352 NA other downstream 576480 30611681 ~ 30882446 (+)
LOC120546905 NA other downstream 759018 30794219 ~ 30812452 (+)
hivep2a LOC103373864 other downstream 1133866 31169067 ~ 31309396 (+)

Expression


Co-expression Network