G188427


Basic Information

Item Value
gene id G188427
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31110654 ~ 31162056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU255268
atgggatttgtaaCGTAGTGAAATACAACacttcactcaaaacgtaatcaagtacattttaaatgacattttaaaactacTTGGAAAAAATACTACATACACAACAAACAGGGAAACACACGTTGAACATTTGAGCTGGGCGAAAAGAAACACTGCCGAGaacgtaaaaaaaaacctttgatAACGTCTCCTTAATGATATTAAGAGGACGTTGAGCTGGGGAACAGCAACTGGAGCTTTATTGATTTTTGTACCAAcatgtagtgtgtagtgtgacTCACGAGATGAATAATAAGAACGCTGCTTAACACATTATTAACGTTCGGTTGTTTTGTTGTAGCTGATGAAGGAATTCATTCACTTTGATAAGAAGTTCATACCAGAAAAGCAGATTACAAATACTGATAgtgagttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgcgtgtgtgtgtagtatgttggtGTTTGAGTGTTTTGTCCACATAACAAAGTCAGACAGTTGCTTAGTTTTTGCCACTGGAAGACACacacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttcgtttcactatctttgtggggacccatcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccct
>TU255270
gcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagtgtggACTTCATTGGTCACCTTTTCCTCTAGATTTACATTTAACGGATGGTTTTCTACGTTATTGGGTATAGTTCAAAAGGGTAAATGGTCTTCTCCACTTCCGCCAGAGGTCGCTTGTTTGTCGTTTCTTGTGCTGTCCTGGGTGGGAGGTGGGCCGGGGGTGGGGCGCTACTCGTCCTCTTCTGTCCGACTCCTGCGcccgccccccccctccctcccccccacgGTCGAGAGGAGATCACTCACCTTTGACCTTTTC
>TU255275
gcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagtgtggACTTCATTGGTCACCTTTTCCTCTAGATTTACATTTAACGGATGGTTTTCTACGTTATTGGGTATAGTTCAAAAGGGTAAATGGTCTTCTCCACTTCCGCCAGAGGTCGCTTGTTTGTCGTTTCTTGTGCTGTCCTGGGTGGGAGGTGGGCCGGGGGTGGGGCGCTACTCGTCCTCTTCTGTCCGACTCCTGCGcccgccccccccctccctcccccccacgGTCGAGAGGAGATCACTCACCTTTGACCTTTTC
>TU255277
atgggatttgtaaCGTAGTGAAATACAACacttcactcaaaacgtaatcaagtacattttaaatgacattttaaaactacTTGGAAAAAATACTACATACACAACAAACAGGGAAACACACGTTGAACATTTGAGCTGGGCGAAAAGAAACACTGCCGAGaacgtaaaaaaaaacctttgatAACGTCTCCTTAATGATATTAAGAGGACGTTGAGCTGGGGAACAGCAACTGGAGCTTTATTGATTTTTGTACCAAcatgtagtgtgtagtgtgacTCACGAGATGAATAATAAGAACGCTGCTTAACACATTATTAACGTTCGGTTGTTTTGTTGTAGCTGATGAAGGAATTCATTCACTTTGATAAGAAGTTCATACCAGAAAAGCAGATTACAAATACTGATAgtgagttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgcgtgtgtgtgtagtatgttggtGTTTGAGTGTTTTGTCCACATAACAAAGTCAGACAGTTGCTTAGTTTTTGCCACTGGAAGacacacacacacacacacacacac
>TU255279
atgggatttgtaaCGTAGTGAAATACAACacttcactcaaaacgtaatcaagtacattttaaatgacattttaaaactacTTGGAAAAAATACTACATACACAACAAACAGGGAAACACACGTTGAACATTTGAGCTGGGCGAAAAGAAACACTGCCGAGaacgtaaaaaaaaacctttgatAACGTCTCCTTAATGATATTAAGAGGACGTTGAGCTGGGGAACAGCAACTGGAGCTTTATTGATTTTTGTACCAAcatgtagtgtgtagtgtgacTCACGAGATGAATAATAAGAACGCTGCTTAACACATTATTAACGTTCGGTTGTTTTGTTGTAGCTGATGAAGGAATTCATTCACTTTGATAAGAAGTTCATACCAGAAAAGCAGATTACAAATACTGATAgtgagttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgggtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255268 True 806 lncRNA 0.41 2 31112491 31162056
TU255270 False 344 lncRNA 0.54 2 31110654 31113409
TU255275 False 328 lncRNA 0.55 2 31110654 31113409
TU255277 False 604 lncRNA 0.39 2 31112491 31132026
TU255279 False 505 lncRNA 0.38 2 31112491 31158136

Neighbor

gene id symbol gene type direction distance location
adat2 adat2 coding upstream 4130 31103745 ~ 31106524 (+)
batf3 NA coding upstream 90242 31016937 ~ 31020412 (+)
nsl1 NA coding upstream 96827 31005482 ~ 31013827 (+)
LOC120546900 NA coding upstream 237781 30863390 ~ 30872873 (+)
LOC120546903 NA coding upstream 260377 30837731 ~ 30850277 (+)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding downstream 334245 31496301 ~ 31504858 (+)
LOC120547349 NA coding downstream 335899 31497955 ~ 31498174 (+)
LOC120547350 NA coding downstream 337053 31499109 ~ 31499328 (+)
LOC120547351 NA coding downstream 338779 31500835 ~ 31501054 (+)
LOC120547352 NA coding downstream 341953 31504009 ~ 31504228 (+)
G188438 NA non-coding upstream 10467 31099842 ~ 31100187 (+)
G188430 NA non-coding upstream 17261 31087810 ~ 31093393 (+)
LOC120546487 NA non-coding upstream 23814 31083471 ~ 31086840 (+)
G188421 NA non-coding upstream 89700 31020581 ~ 31020954 (+)
G188353 NA non-coding upstream 296869 30783618 ~ 30813785 (+)
G188450 NA non-coding downstream 28346 31190402 ~ 31251118 (+)
G188719 NA non-coding downstream 189392 31351448 ~ 31355505 (+)
G188736 NA non-coding downstream 296365 31458421 ~ 31458701 (+)
G188737 NA non-coding downstream 310721 31472777 ~ 31472998 (+)
G188748 NA non-coding downstream 428999 31591055 ~ 31591459 (+)
G188352 NA other upstream 228208 30611681 ~ 30882446 (+)
LOC120546905 NA other upstream 298202 30794219 ~ 30812452 (+)
angel2 NA other upstream 774452 30324972 ~ 30336202 (+)
btbd9 btbd9 other upstream 1013415 30084548 ~ 30097239 (+)
G188296 LOC107662224,LOC107746645,LOC107750038,LOC107712283,LOC107663761 other upstream 1464831 29645254 ~ 29645823 (+)
hivep2a LOC103373864 other downstream 7011 31169067 ~ 31309396 (+)
LOC120546816 NA other downstream 443998 31606054 ~ 31614522 (+)
LOC120546196 LOC105017826 other downstream 614907 31776963 ~ 31782066 (+)
myo6a myo6,LOC103369425 other downstream 1414400 32576456 ~ 32767003 (+)
mei4 NA other downstream 1803782 32965838 ~ 33041169 (+)

Expression


Co-expression Network