G188719


Basic Information

Item Value
gene id G188719
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31351448 ~ 31355505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU255734
AAGACGAGAACAGGTCTTAATCAGTGTTGCAACACAAGATTTATTCAGAGCAAGAGATGCCAACACCAGCATGATAAAAATTGTACAAACTTCACAAGTCAAATGAAAATATCACGTAGTGTATCTCGTGACCTTAAACGTACAGCAAAAATATCAACAAAACCCATGCCATGTGGTAAGAAAACTGTTATTGAAAGTTTGCGAGAAACACAGAAAAAGGGGTAAAAGGAGAGAAATGAATGTTGTATAAAAACCCCTTATCAATGCACTGCTGAAAAGAAACTGTAACATTTTCATAAACTGATGATTTCACAAATAGTCATATGGATTTATTTTGCATTCTAGCATGTAACATGTTAGTGTTGAAATTCTCTATATGTAAATAGTTACAGTTTAGCTTTTACATCTGATATTACAATATCTAGTCTATTGACTTGTCTTTAAGTGGCAGAATTGTGCTTTAACTCCCATTTCCTTTGTTATCAGTAAGAATAACtgactacataaaaaatacaagCCGTCAGTCTATCTAATGCAGTAGTTTACTGGCAGGAAGCTGCAGACACAAAGCTTTGGACAGAGATGGGAAGTCAGGGAATGAGGCTTTGCAGTAAAAGTCCAAAGAAGAAGCGTCTTTAAAGGAAACTCCCCCTGTTAGTACTTTCTTTTTCCAGCCTGAGGGAAACTATAGATTGAAAGCAAACTGGAGAAAAACATCAATTGgctgttaaaggtgcagtaggtaagacttataaaactaactttctgtcatatttgctgaaactgaccctatgttccagtagaccTAAATGAAgtaggtaataaaaaaaaaaaaatccagctcctctggcaccacctacagcctgtagtgtgatttgcaaaaatccactgctccctgttcagatgcaccaatcagggccagggggggggtgtctaactgcgtgtcaatcactgctcatgcacacgcattcattcttcCTTGTGTGGGGAGGGGCTAAGaagactgttttgggctttagcagaaagtggggagggactgagaagttgtcaatgttaaaaatgtttggctaagtcctggatcttcccaatcctacctacagcaccttttaacaTCACGTTTAGCCAGGAATCAGTCCCTCAGAGTCACCAATCAAATGGTTATGATTTGGTGGAAGTTATAGTTAACTCTTGATTTTTCCCTTAAATATCTTTACATCAGTAAATATTTCCCACACATTGGAGATATATAAAGTTGATGTCGTTTTTATAGTTTTAACGTAAAATCTGCTGGACATTACTCATATATTAGGACATTTGGGGTTGCTACTTGAATTTTAACggtcaaaaatatgtttttatttaactgaGAGCAACATCGTTTGATCCATTTCTCTACTGaaaggcattctgggaaatgtaggaaatctcAAACTGAAGTAGAATGGGAAGAGGCGGGTTGATGTACGACACTGAACCAGACTGAGGGCTTTTAGCTTTTGAGtaatcacatttttatttattttttcaaaacaaaggGCTGTAGTTGCCTAATTCATCCAAAATGGACCCAGAATCCAAAAGTAAATCTAAGCTGTAGTTAAAAAGAAGAATTTTAAATTTACATGTTATACATGTctaaagaatgcctctaaaacccgaataatacccCACGTCTTAATTGGAAATTGCTATATTTGGAATAAGGCCTTatacttgagcgtacgttctgcgcgtgcacgtgacgtaatacgtctccataaagcaggcagcgctaatctgtattgtcgcccaaaaaatgaaaaccgttaatgacggaacatctctctagacctcgtaaacacagagcacgctgtcgtcagtcactgttttcatcagagagggttgatagtagtcaagaaggatcgttgttgtcattactcgctgaacggaGGAAAATACGATGGCTAGTAATGAGAAGATGCTGGCGTTGTCCGCTCTCGGGCTCTCCCGTTTTCtcgtgcactgattcgctagtcaaggtctagcactccaccaatcagattggtcattgagtccgactgcccactggctgattcaacaagtcaaattgggcaaaaaaaacatactggAATGGTGGTTAACAATGTAAGGGTACCGAAGGGGGAGTTTTCCTTTTCCTTAACAAATCAACCAAGTGAAATTTGTTCCAGGTTGCTTTCAAACAGGAATCACCAGCACAAAGTCTTGTCAAAGTCACAGTTTCCACAAACTTGCTGTACAGTTTTTGCTTCATTTACCACGTGATAATACTTTGACATACTCCAATAAAGTGCATGCATGATCGACGGTATTCAGAAAACGTATTCCATCAGTACTGTGATTTCAGATTGAATGTCATCGTAAGGCCGATTCAGATCAAATACTCAGTCGGTGCGTTACGACTGCTGGCTCTACTTTTTATTCATCTTTTCAATAACAAtcaaagataataaaaaaagtgcTGCTTGGTCATCATGTCGTCTGGCATCATGTCCCATTGTGGCTCACACAATAAGATGCGTGATTGGAAAGACGTTTTCTACAGAACAAGTGCAATATACAATGATGGATGGGGACGTTTGACCCTGTAAGTCCAGTGGAGCCGTCAGCCTTTAGAAAGAAAAATCATATCTACAAATCCTTTCGCCTGCCAAGTGCCTCTTAATCGacaataaaaaacatcaaaacatggAAACAAAGGTGTCCCTGTGCAAAGTCGAACATGACAGAACCAAAGTCCTTTCACCCGCGTCAGATTTCCTAAAACATGATTGTAGTAAAAGGTTTATACAAAACGCAATACATTTATAGTTAGTAAAAAGATCTATCAgctctttgctagtttaattCATAAGAAATTGCATATACCCAAACATTTTTTCATATAGATTGCATCCCATATCTAAACAAATGATTTAATATTATCATACCAATATTGCTGACACGTTGTCCTATTAGCTAGTTCAAGGTTgatgaataaaagaaattcAGAACGGCAGATTGTCTCCTACATTTTCTGTAGCCATTGGTCTTTCCGCTTCATTCTccgcacaaacacagaaaagcgACAGAAACAGGACAGTCTGAAACCAAACAACACCGAAGGGGATGATGGGATTTGCACCAGTAAGTTTCCGTGTCATGATGTTTGAAATCTTCTTGCTTATAGCATTGGTTCTTCTCGTAATTTTAGCTAAagatttacagtaatataagtGTCCACTTTTGaaacaatacaaaaatgaatgaTGTACATCCATTAAACAACCTCCAGCTTTACAGCTTGTGAGAGAAGCCTTTCGAAAATGATTGCTCGTAAGGTTCCCCCTCGCTGCTCTGCTCCCCGTTAAAACCGTGAGGTCCAGTTTTTTGACGTCTCGCGTTAAAATAAGAAATGATTCAAGCTtacaaTAGCAGCTATAAACAGTACATCACATTATATTAGGTCATATGAAAATGTACAAAACGTGAATGTTCGTTTTAAACGTTGGTAATTGTTTTCAAAGCAAGGCAACgacaaataaacaataaaaaaagagatacCCATGGAGTTGAGAGCATAACAGCAGAAGAATTAAAAGAACTATTGTAGATTACAGCAGCAAAAAACAACCcattccccttttttttttttacttttttgttgttgtttttgctttgcATTTGTTATTTTGGCCTCAATCAGGGCTAGACCTGGATACCCTGAACTGCCTGTTTGATGTTCTCCAGCAGCGCCTTGTTCTCCGGGCTCTGGTACTGGTCCTGGTGAGTATACATGTCTGTCAATGTACTCACATAAGTGTCAAAGTTCTGTTCATTCATTGGCTCCTGTGAGGGGAAAGAAACCCACGAAGAAACAAGACATCAGAGGGATTAGAGTTTGTGCTTTTAGAGAATAAGTATGTTTTCTGTAAGACAGTGTGGGGAAAGGTTTGGAAGACAAGCGGACAGCAACGGACGAAGGGAACATCATCAGGGAAGCATGGCTCGCTTACAC

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255734 True 4015 lncRNA 0.39 2 31351448 31355505

Neighbor

gene id symbol gene type direction distance location
adat2 adat2 coding upstream 244924 31103745 ~ 31106524 (+)
batf3 NA coding upstream 331036 31016937 ~ 31020412 (+)
nsl1 NA coding upstream 337621 31005482 ~ 31013827 (+)
LOC120546900 NA coding upstream 478575 30863390 ~ 30872873 (+)
LOC120546902 NA coding upstream 501171 30845055 ~ 30850277 (+)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding downstream 140796 31496301 ~ 31504858 (+)
LOC120547349 NA coding downstream 142450 31497955 ~ 31498174 (+)
LOC120547350 NA coding downstream 143604 31499109 ~ 31499328 (+)
LOC120547351 NA coding downstream 145330 31500835 ~ 31501054 (+)
LOC120547352 NA coding downstream 148504 31504009 ~ 31504228 (+)
G188450 NA non-coding upstream 100330 31190402 ~ 31251118 (+)
G188427 NA non-coding upstream 189392 31110654 ~ 31162056 (+)
G188438 NA non-coding upstream 251261 31099842 ~ 31100187 (+)
G188430 NA non-coding upstream 258055 31087810 ~ 31093393 (+)
LOC120546487 NA non-coding upstream 264608 31083471 ~ 31086840 (+)
G188736 NA non-coding downstream 102916 31458421 ~ 31458701 (+)
G188737 NA non-coding downstream 117272 31472777 ~ 31472998 (+)
G188748 NA non-coding downstream 235550 31591055 ~ 31591459 (+)
G188749 NA non-coding downstream 241710 31597215 ~ 31597715 (+)
G188757 NA non-coding downstream 319200 31674705 ~ 31752206 (+)
hivep2a LOC103373864 other upstream 42052 31169067 ~ 31309396 (+)
G188352 NA other upstream 469002 30611681 ~ 30882446 (+)
LOC120546905 NA other upstream 538996 30794219 ~ 30812452 (+)
angel2 NA other upstream 1015246 30324972 ~ 30336202 (+)
btbd9 btbd9 other upstream 1254209 30084548 ~ 30097239 (+)
LOC120546816 NA other downstream 250549 31606054 ~ 31614522 (+)
LOC120546196 LOC105017826 other downstream 421458 31776963 ~ 31782066 (+)
myo6a myo6,LOC103369425 other downstream 1220951 32576456 ~ 32767003 (+)
mei4 NA other downstream 1610333 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 1972587 33328092 ~ 33386989 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G467568 NA non-coding CI01000325 null 7596381 ~ 7599813 (-)
tiger barb (Puntius tetrazona) G138922 NA non-coding NC_056718.1 CM032087.1 15816920 ~ 16190659 (-)