LOC120546196 (LOC105017826)


Basic Information

Item Value
gene id LOC120546196
gene name LOC105017826
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31776963 ~ 31782066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU255816
CCCGGTCGCACACAGACAGTCGCTGCTCAATTATGAGCCAGTCCCGGCTCTAAACAGCCAGGATACACCGGACGGTTACCGGCTGCCAGCGGAGGACAGGTTTCGGCTCGTTTGAAGCTGTTTGGATGAATTAAAGTTGGAGCGTACACGATGCTGAGCGCCGTTAAAATGGAGGGACACGAACATCCGGACTGGAGCGGCAGCAGCTACTACGGAGAGACCGAGtgttacGCCGCAGCAGGACACATGAATTCTGGCCCGCCCATGAACTCAATGAGCAGCTACATGAACGCGCCCGGCATGTCCGGCGCCGGCCACATGAGCGCGCACTACGCAAACCCGGTCGGGGTCAACCACTCGATGATG
>XM_039780976.1
CAGCGCGAACGCAGGTGCCAGGGTCCCCTACAACCATGCTAGCGACTCCGTGAGGCAGAAGCCCCGCCCGGTCGCACACAGACAGTCGCTGCTCAATTATGAGCCAGTCCCGGCTCTAAACAGCCAGGATACACCGGACGGTTACCGGCTGCCAGCGGAGGACAGGTTTCGGCTCGTTTGAAGCTGTTTGGATGAATTAAAGTTGGAGCGTACACGATGCTGAGCGCCGTTAAAATGGAGGGACACGAACATCCGGACTGGAGCGGCAGCAGCTACTACGGAGAGACCGAGtgttacGCCGCAGCAGGACACATGAATTCTGGCCCGCCCATGAACTCAATGAGCAGCTACATGAACGCGCCCGGCATGTCCGGCGCCGGCCACATGAGCGCGCACTACGCAAACCCGGTCGGGGTCAACCACTCGATGATGCACGCCGGCGTGTCGCAGAGCCCCGGCGCCGGCATACCGGGCCTGGGCGGCGCGCTGCCGCCGAGCATGAGCTCCATCAGCCCGCCGCCGTACGGGAACATGGCGAACATGATGAGCCCCGCGTACGGCCAGGCCTGCGGCGTCCGATCCAGGGAGCCCAAACCGTACCGGCGGAGCTACACGCACGCCAAGCCGCCGTACTCGTACATCTCCCTGATCACCATGGCCATCCAGCAGTCGGGCAGCAAGATGCTGACGCTGAACGAGATCTACCAGTGGATCACGGACCTGTTCCCGTTCTACCGGCAGAACCAGCAGCGGTGGCAGAACTCCATCCGCCACTCGCTCTCCTTCAACGACTGCTTCGTCAAGGTGCCGCGCATGCCGGACAAGCCGGGCAAGGGCTCCTTCTGGGCGCTGCACCCGGACTCGGGGAACATGTTCGAGAACGGCTGCTACCTGCGGAGGCAGAAGCGCTTCAGGAAAGTGCCCGGAACGGGCGACAAGGAGGCGCCGGGGAAGCCGGGCTCGGAGGCGGCCTCGGTCGCGGCCGGCAGCGCCGGCTCCGACTCCCCCCGCTCGTCTTCGGCCTCCTCTCCCCCGTCCTCGGACGCGAAAGCGACCGCGGCGGATTTCAAACCGTCCCGGGGTGAACCGTTGCCCTCCAGCCCCGTGCGCGTTCCCTCGCCGCTCGCTCACACCCAGCCCCTGTtctcccaccaccaccaccaccaccacccgcTGCTGCTGCACGaggccgccgccgccgccgctgcCGCCACGCACCTGAAGCCGGACCCGTACCACCACCAGCACCCCCACCAACACCACTACTCCTTCAACCACCCGTTCTCCATCAACAACCTCATGTCGGAGCCGGCGGTGCAGTACGGCGGCTACGGCTGCCCCGTGTCCGGCGCGCTGGTGGCGGCAAAAAGCGCCCTGGATCCCGGCGCTCACGCCGACAACAACTACTACCGCGGCGTGTACGCCAGACCCATTATGAACTCCTGAAATACTTCTTAGGG

Function

NR:

description
PREDICTED: forkhead box protein A2-like isoform X3

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255816 False 366 TUCP 0.59 2 31777029 31781038
XM_039780976.1 True 1460 mRNA 0.66 2 31776963 31782066

Neighbor

gene id symbol gene type direction distance location
cebpz LOC104961443,LOC104960473 coding upstream 20045 31735570 ~ 31756918 (+)
LOC120547115 prkd3,LOC103372736 coding upstream 72600 31620408 ~ 31704363 (+)
LOC120546439 NA coding upstream 190014 31582418 ~ 31586949 (+)
cnksr3 LOC103372737,LOC102212624,LOC102300107 coding upstream 201212 31507627 ~ 31575751 (+)
LOC120547352 NA coding upstream 272735 31504009 ~ 31504228 (+)
nkx2.2b NA coding downstream 84828 31866894 ~ 31869296 (+)
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding downstream 99399 31881465 ~ 31884802 (+)
crnkl1 crnkl1 coding downstream 311885 32093951 ~ 32105660 (+)
cd109 NA coding downstream 329524 32111590 ~ 32145910 (+)
senp6a NA coding downstream 753669 32535735 ~ 32569277 (+)
G188757 NA non-coding upstream 24757 31674705 ~ 31752206 (+)
G188768 NA non-coding upstream 55676 31720092 ~ 31721287 (+)
G188763 NA non-coding upstream 65992 31708879 ~ 31710971 (+)
G188761 NA non-coding upstream 73316 31703031 ~ 31703647 (+)
G188749 NA non-coding upstream 179248 31597215 ~ 31597715 (+)
G188785 NA non-coding downstream 57740 31839806 ~ 31911299 (+)
G188809 xrn2 non-coding downstream 136933 31918999 ~ 31927133 (+)
G188816 LOC106633344,LOC106098344,LOC106674933,LOC106456206,LOC108426271 non-coding downstream 165132 31947198 ~ 31952652 (+)
G188818 NA non-coding downstream 186557 31968623 ~ 31968941 (+)
G188819 NA non-coding downstream 203246 31985312 ~ 31986086 (+)
LOC120546816 NA other upstream 162441 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 467567 31169067 ~ 31309396 (+)
G188352 NA other upstream 894517 30611681 ~ 30882446 (+)
LOC120546905 NA other upstream 964511 30794219 ~ 30812452 (+)
angel2 NA other upstream 1440761 30324972 ~ 30336202 (+)
myo6a myo6,LOC103369425 other downstream 794390 32576456 ~ 32767003 (+)
mei4 NA other downstream 1183772 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 1546026 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 1617735 33399801 ~ 33416086 (+)
G189269 NA other downstream 1671930 33453996 ~ 33458768 (+)

Expression


Co-expression Network