myo6a (myo6,LOC103369425)


Basic Information

Item Value
gene id myo6a
gene name myo6,LOC103369425
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32576456 ~ 32767003 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU256147
GGAGAGTGTGGCCCAGGCTACCGGAGCGAACACCTATCATCTGGAGACAACCGGCACGGCTGTGTTTGGGACGTGCGCTtcacttcctttctttctttgtgggatttaaaaaacagaaacaaacataaTTTCCATAAAACAAGCCACGGGAGTTCACGCACAAACGAGAGTGCTCAGAGCGGTGCGATGGAGGACGGGAAGCCGGTGTGGGCGCCCCACCCAGCGGACGGGTTCCAGCTGGGAACCATAGTGGACATCGGATCCGACAGCCTCACCATCGAACCTCTCAAACAGAAGGGAAAGaccTTCTTGGCCGCTATCAACCAAGTCTTCCCCGCCGAGGATGACGTCAACAAACACGTGGAGGACAACTGTTCTCTGATGTACTTGAACGAAGCCACGCTGCTCAACAACGTTCGCGTGAGATACAGCAAAGACAAGATCTACACGTTTGTAGCCAACATCCTGATCGCGGTGAACCCGTACTATGACATCCCAAAGCTCTACTCGCCAGAGACCATCAGCCAGTACCGGGGCCGCTCGCTGGGCACGCTGCCGCCACACGTCTACGCCATCGGTGAG
>XM_039781369.1
GGAGTCGGAGGCAGGAGGGCGGGGAGAGTGTGGCCCAGGCTACCGGAGCGAACACCTATCATCTGGAGACAACCGGCACGGCTGTGTTTGGGACGTGCGCTtcacttcctttctttctttgtgggatttaaaaaacagaaacaaacataaTTTCCATAAAACAAGCCACGGGAGTTCACGCACAAACGAGAGTGCTCAGAGCGGTGCGATGGAGGACGGGAAGCCGGTGTGGGCGCCCCACCCAGCGGACGGGTTCCAGCTGGGAACCATAGTGGACATCGGATCCGACAGCCTCACCATCGAACCTCTCAAACAGAAGGGAAAGaccTTCTTGGCCGCTATCAACCAAGTCTTCCCCGCCGAGGATGACGTCAACAAACACGTGGAGGACAACTGTTCTCTGATGTACTTGAACGAAGCCACGCTGCTCAACAACGTTCGCGTGAGATACAGCAAAGACAAGATCTACACGTTTGTAGCCAACATCCTGATCGCGGTGAACCCGTACTATGACATCCCAAAGCTCTACTCGCCAGAGACCATCAGCCAGTACCGGGGCCGCTCGCTGGGCACGCTGCCGCCACACGTCTACGCCATCGtaaATTTGTGCCGAAGATGTTTAGCCGTCCGGCTCGATCAGGAGCCGGAACCGGGAACCCAAAACACCAAGTTCCTCCAATACTTGACAACCTCGTATGGAACCGGTCAGGACATTGACGAGAGAATAGTGGAAGCGAACCCGTTGCTGGAGGCTTTCGGAAACGCAAAAACCGTCCGGAACAACAACAGCAGTCGCTTCGGGAAGTTTGTGGAAATCCACTTTAACGAGAAGAATGCGGTGGTGGGCGGCTTCGTGTCGCACTACCTGCTGGAGAAGTCGAGGATCTGCCAACAGAGCAAAGAGGAGAGGAACTACCACATCTTCTACCGGCTGTGTGCCGGAGCCACCGAGGACATCCGGCAGAAGTTTCACCTCACCTCCCCGGACACGTTCAGGTACCTGAACAGAGGATGCACTCGCTACTTTGCTTCCAAAGATACGGACAAACAGATCCTGCAGAATCGCAAGAGCACAGAGCACGCCAAGTCGGGCCCTCTGAAGGACCCGCTGCTGGATGACCAGGGCGACTTCAACCGGATGTCCGTGGCCATGAAGAAGATTGGCCTGGACGACACGGAGAAGCTGGACCTGTTCCGGGTGGTGGCCGGCGTGCTGCACCTCGGCAACATCGACTTCGAGGAGGCCGGGAGCACTTCAGGTGGCTGCGCCATCAAGAACCAGTCGAGTCAGACGCTGGAGCACTGTGCCGAGCTGCTGGgcctggaggaggaggaccTGAGAGTCAGCCTCACCTCCAGGGTCATGCTCACGTCAGCAGGGGGCGCCAAAGGAACGGTCATCAaGGTGCCACTCAAAGTGGAGCAGGCTAACAACGCTCGGGACGCCCTGGCGAAGGCCGTGTACAGCCGCCTTTTCGACCACGTGGTGACCAGGGTCAACCAGTGCTTCCCCTTCGACTCCTCCGCCAACTTCATCGGCGTCCTGGACATCGCTGGCTTCGAGTACTTTGAACACAACAGCTTCGAGCAGTTCTGCATCAACTACTGTAACGAGAAACTGCAGCAGTTCTTCAATGAGCGGATACTGAAAGAGGAGCAAGAGCTGTACCAGAGGGAGGGGCTCGGAGTCAACGAGGTCCACTATGTCGACAACCAGGACTGCATAGACCTGGTGGAGGCGAAGGTGCTCGGCATCCTGGACATCCTGGACGAAGAGAACCGACTACCTCAACCCAGCGACCAGCACTTCACCGACACCGTTCACAACAAACACAAGGACCACTTCCGCCTCACCGTTCCCAGGAAGTCTAAGCTGGCGGTCCACAGGAACGTGCGGGATGATGAAGGATTTATTATCAGACACTTTGCAGGAGCCGTGTGCTATGAGACGACCAAGTTTGTGGAGAAGAACAACGACGCGCTGCACATGTCTCTGGAGAGTCTGGTCAGTGAGTCTAAGGACCGCTTCATCCGCGAGCTCTTCGAGAACTCCAGCAACAGCAAAGACATGAAGCAGAAGGCGGGAAAACTGGGCTTCATCAGCGTCGGCAACAAGTTTAAGACCCAGCTGAATATTCTCCTGGAGAAGCTCCGCAGCACGGGCTCCAGTTTCATCCGCTGCATTAAACCAAACCTGAAGATGATCAGCCACCAGTTTGAAGGCGCTCAGATTCTCTCCCAGCTGCAGTGCTCCGGTATGGTGTCAGTGCTGGACCTGATGCAGGGCGGCTTCCCCTCCAGGGCTCCCTTCCACGAACTCTACAACATGTACCAGCAGTACATGCCGCCCAAACTCACCCGCCTTGACCCGCGCCTCTTCTGCAAGGCTTTATTCAAAGCTCTGGGGCTGAATGAGAATGACTACAAGTTCGGACTGACCAGAGTGTTTTTCCGGCCTGGGAAGTTCAAAGAGTTTGACCAGATCATGAAGTCGGACCCGGACCACCTGGCAGAGCTGGTGAAGAAGGTCAACAAGTGGCTCATCCACAGCCGCTGGAAGAAGGTCCAGTGGTGCTCTCTGTCCGTCATCAAACTGAAGAACAAGATTCTGTACCGGACCAGCGCCTGCATCCAGATGCAGAAGACAGTTCGGATGTGGCTCTGCAGGAAGAAGCACAAGCCTCGGATCGACGGGTTAGTGAAGGTGCGTAACCTGAAGACGAGGATGGACCGCTTCACCGAGGTGGTGGCCGGGCTGAAGGAGGGCAAACAGGAGATGAGCAAGCAGACCCAGGATCTGGAGAACGCCATCGACTCCCTGGTGGCCAAAATCAAGAGCACCATGATGACCCGCATCGATATCGACCACGAGTACCGGGCGCTGGTGACGCGGTCGGAGCAGCTGCTGACCGCCATGCAGAacaagaagaaggaggaggaggagagagagaggctgcgGCGCATccaggaggagatggagagagagaagaagaggagggaggaggaggagaagcgcCGCCTGCAGGAGGAGGACGACAGGCGGCTGAAAGCAGAGATGGAGCTGAAGAGGaagcaggaagaggaggagaggaagaagagggaggaagaggagagaaagatgcAGGTGGAGATggagctgcagctgcaggcGGAGCGGGAGCAGGAGGCGTCCCGGCAGACCGTCCTGGAGCAGGAGAGGCGGGACCGGGAGCTGGCGCTGAGGATCGCTCAGAGCGAGTCGGAGCTCATCCCTGATGAGGTGCAGATCGACGCGGGCCTACGCAGTAACGGCTCCTCAGTTCCATCATCCCCAGAGAGAGCAGCCACGGTGGGAACCACAGTACTCAAGAGCTTGACCATGGAAGAAATGgcgaaggaaatgactgaaCTTCTGTCTAGAGGTCCACAGGTTCAGGCGTCCAAGGCCGCTGCCGGCGCCAAGAAGTACGAGCTGAGCAAGTGGAAGTACGCTGAGCTACGGGACGCCATCAATACCTCATGTGACATCGAGCTGCTGGCCGCCTGCAGAGAGGAGTTCCACCGCCGGCTCAAAGTCTACCACGCCTGGAAGTCAAAGAACAAGAAGAGGAACACGGAGACGGAGCCGCAGCGAGCGCCGAAATCTGTCACCGACTACGatcATGCACCTCCTGTGAAAACAGCATCGCAGCAGAACCCGGCCCCGCCCATCCCGGCCCGGCAGTACGAGGTGGCCATGAACCGGCAGCAGCGCTACTTCCGCATCCCGTTCATCCGGCCGGGCGACCAGTACAAAGACCCCCAGAACAAGAAGAAGGGCTGGTGGTACGCGCACTTCGACGGGCCCTGGATCGCCCGGCAGATGGAGCTGCATCCCGATAAACATCCCATCGTTCTGGTGGCAGGAAAAGACGACATGGAGATGTGCGAGCTGAGTCTGGAGGAGACGGGCCTGTCGAGGAAGAGGGGCGCCGAGATCCTCCCCCGGCAGTTCGAGGAGATCTGGGAGCGCTGCGGCGGGGTCCAGTACCTCCGCAGCGCCATCGAGAGCCGGCAGGCGCGCCCCACCTACGCCACGGCCATGCTGCAGAGCATGTTCAAGTAGACGGAGCCCAGAGGAGGGGGGAGTGGGGGTGGTTCGCAGCGCAAACAAAGGGACAAACGCACCAGCTACCTACAGTAACACAGATGGCGTCTGAGAGTACTGCACCAGGTTCTGACTGCGGGCATTCACGTGAACAGCGATTCTTCTCAACTGtccttttgtttctcttctgtttttttgttcgTGCTGGCTTTCGGTTCCTCGGAGAAGAaagtggtggggggggggcaggcaGGGAGGTTTTGCATTGAACCCTATGCAGAAAAATCATAGTAAATTATCACATCTGGTTGTTTTCCAAGGAATTCTGTTctctgtaacatttttgcaAGTCTAACTCTGAGGCCTTAATACTTTACTTTAACAGGGTTTAAAATGCCACAAGTAGGACTGTTTGTTTTAAAGCTGCCTCCCCAAACAAGAAAACTTAATTCCTCTGTAATTATGCATTCCTGATTATTACGCTGAAGTCTTACTGGTGTGTCGCTTCCATCTTAACAGCTAGCTGGTGATCCCTCTCCGACTTTAAACCTGCTGTTTACATGGTCTTCATGGGGTTCTTACAGGGCGAGAAACACTTGCACAACAGGCGCTCAGCGCGAGGCAGCGCTGCACGAGTGACTGCACTCAGAATGAAGTCAAATATTTGctaattctttctttttttatttttaccttttgtcTTTCCAACCGAATGTAACTCGAGACCTCGTGGATTTGTTCATGTAGtgattcttcttttcttctcacCGTGTGTTATTAAATGTGTAAAAGAAATCAGAAAAAggtccaaaaaaaaaacgtttgacTTTGAGACCAAACATTGCCCCTCGTTGGGTTTCGGTAATTCAGCTCCGTGATTACTTTTTCGTCTGCGTTTTATGAAGCCAAGCAGGAAATTGTGAAATAATTATGCAACTCCACGCGGGCTGTTTTGAGACCAGATCAGTGCTGCAAAAAAATATCCTCCATACATTCTTTAATCTTCAGATTTGATCTTTTTACACAAGGAAACATTATTTTGCCAATGCAGTGATTCCCAAGGCAGTTTAACGTTTTTCATTATCCTGAAAACATATAATCATGTGATTCCAGAAatgttttaaagaaattccaaATCTCACATCAGATTGAAAAGCTACGGAGCGCGTCGATTACCTCTGTACGATGCACTGGTACTCAGAATGAACTGGAACATTCATACAAACACTGAACATTTGATGTGCACCCCAACAGTGATATTCCAACTGGAATGTAAAAGTTTATTTTTGGAAGAACAGTTTTCTACTCATGCTCTGGCACGAGAAGCAATAAATCACgcaagctaagctaagctaagatgggggggggaaaaaaacaggcGTCCTTTGatgtacacaaaaaaaaagtcaagacaATCTGCTGTGACGTTACACCTTTATTCACCAGAGGTTGCCAAGTGTGTTCCCGAGCTTTCTCTTCCTTTTGACGCTCTCCTCTGCACAACAAAACGTGGTTaccctttacttgaaggtatctccATAAGAGTGACACTCTTATGGAGATACCTTCAAGCAAAGTGTTACCGAAAACGCTGACTTAGATTGTCTGAAAGCACGAAAATCCGTGTCGCTGCAAAGTGTCTGTTCCTCTTTTTATAAATGGCATTAACACGCAGGAAAGCTGGCTCGAATATCAACGAAAGAACGCCCCCAAGAGAAGCGAACGGTCCGATAGTCGAGCTGCTAGTGGCGCAACGTTTGGATTTGGTGATCTACGGGTTGAAACTCGTCTAGACGTCTTGGTTAAAAGTGGgctgaaaagatttttttgggaTGTTTAGGCTTATAAGTAACTCTGGCTTTCATGGAAACACAAGTGTGAGTAAACTGGccaatacaactttttttttctgatagAGAATTTTTGTCTGATTAAAACAAACTGTTTTCCTGTCCGTTAATGCCAAGTGTAAAGGGGCCACATTCTGAGCTAGGCCCACGATTACGACCTCAGAGAAGTGACCTCGAAATATTTCCTGAAATGTACAAGAAAGTCCCGCTTCTGCTCCGATCTGTTTCTCTTCCACACATTTACAATCATTCCTCGGGAAGCACTGCCTTTGTCCACTGTCACTTTTCTAACGCTGATCTCTCTAACAGATGAATAAAAGCATTCCATGTTTCA

Function

symbol description
myo6 Enables actin filament binding activity and identical protein binding activity. Involved in several processes, including DNA damage response, signal transduction by p53 class mediator; endocytosis; and positive regulation of transcription by RNA polymerase II. Located in several cellular components, including nucleus; perinuclear region of cytoplasm; and ruffle. Part of RNA polymerase II, holoenzyme and filamentous actin. Colocalizes with clathrin-coated endocytic vesicle. Implicated in autosomal dominant nonsyndromic deafness 22; autosomal recessive nonsyndromic deafness 37; ovarian cancer; and sensorineural hearing loss. Biomarker of prostate cancer.

NR:

description
PREDICTED: unconventional myosin-VI isoform X7

GO: NA

KEGG:

id description
K10358 MYO6; myosin VI

RNA

RNA id representative length rna type GC content exon number start site end site
TU256147 False 582 TUCP 0.55 5 32576478 32622264
XM_039781369.1 True 6250 mRNA 0.52 36 32576456 32767003

Neighbor

gene id symbol gene type direction distance location
senp6a NA coding upstream 7179 32535735 ~ 32569277 (+)
cd109 NA coding upstream 430546 32111590 ~ 32145910 (+)
crnkl1 crnkl1 coding upstream 470796 32093951 ~ 32105660 (+)
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding upstream 691654 31881465 ~ 31884802 (+)
nkx2.2b NA coding upstream 707160 31866894 ~ 31869296 (+)
nt5e NA coding downstream 332366 33099369 ~ 33127591 (+)
bub1 NA coding downstream 434402 33201405 ~ 33228839 (+)
LOC120546516 NA coding downstream 464031 33231034 ~ 33238327 (+)
LOC120546153 LOC103369399 coding downstream 512908 33279911 ~ 33286940 (+)
LOC120546181 adgrg6 coding downstream 862797 33629800 ~ 33666253 (+)
G189027 NA non-coding upstream 5821 32563850 ~ 32570635 (+)
G189029 NA non-coding upstream 10095 32565532 ~ 32566361 (+)
LOC120547301 NA non-coding upstream 41229 32525522 ~ 32535227 (+)
G189024 NA non-coding upstream 60809 32515355 ~ 32515647 (+)
G189020 NA non-coding upstream 97964 32477854 ~ 32478492 (+)
G189114 htr1e,htr1b,LOC103130375,LOC106909287,LOC103457078 non-coding downstream 198271 32965274 ~ 32965502 (+)
G189117 NA non-coding downstream 205007 32972010 ~ 32972221 (+)
G189125 NA non-coding downstream 275895 33042898 ~ 33043227 (+)
G189131 NA non-coding downstream 311104 33078107 ~ 33078410 (+)
G189134 NA non-coding downstream 325714 33092717 ~ 33093335 (+)
LOC120546196 LOC105017826 other upstream 794390 31776963 ~ 31782066 (+)
LOC120546816 NA other upstream 961934 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 1267060 31169067 ~ 31309396 (+)
G188352 NA other upstream 1694010 30611681 ~ 30882446 (+)
LOC120546905 NA other upstream 1764004 30794219 ~ 30812452 (+)
mei4 NA other downstream 198835 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 561089 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 632798 33399801 ~ 33416086 (+)
G189269 NA other downstream 686993 33453996 ~ 33458768 (+)
G189309 NA other downstream 874617 33641620 ~ 33685556 (+)

Expression


Co-expression Network