tbx18 (tbx18)


Basic Information

Item Value
gene id tbx18
gene name tbx18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13056433 ~ 13066587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780898.1
TCCACTAAGCTCCGGTTGTTGACACTCTCCAAAAGTCCGCACGGCTCTCACGGATAACGGAGACATTATTAGGCTACAGCTCGTCCCGGCTCCCTCTGTTTCCTCTGCTGTCCGGCTCCAGGACGGACAACCCGTCGCACGGAAAGAACTGGACTGCCATCGTGGATTTCCTTGTTTTTCGACTCGGTGCGTTTTGAACTTTTCTTGCTCCCTGCAAGCTCGTGACGCCGTCTCTTTCCTCTCGTTCCTCTGCTCGGAGACCGAGAGAAATGGCAGAGAAGCGGCGGTCCCCGTGCGCGCTGAGTGTTAAGGCGCATGCATTCTCGGTAGAGGCGCTGATCGGAGCCGAAAAGAGACGCAGGAAGGCCGGGGAGGATGCTGTGTCCGCCGACTACGAGGACGGAACTGATGTATCTGATCTAACCGGCAGCCCGGGGCCGCGAGCCGACCGAGCGTGCACCAGCGACCGGGGCAGCGAGGCAGAATGTGCAAGTGACGGATCCCCAGAGAGCGAGGACGCGCTGCTCGAGAGCCCGCAGCCTGCAGCTCCGTGCACGGCGCCGGTAACCGCGAGCGGAGAGGAGACCCGCGTGGAACTGCAAGGATCAGACCTGTGGAAACGGTTCCACGAGATTGGCACGGAAATGATCATTACCAAGGCTGGACGGCGGATGTTCCCTGCTATGCGTGTGAAGATTACGGGCTTGGACCCACATCAGCAGTATTACATTGCCATGGATATAATCCCCGTGGACAACAAACGatacagGTACGTGTACCACAGCTCCAAGTGGATGGTAGCGGGGAATGCGGACTCGCCTGTGCCGCCCAGAGTGTACATCCACCCGGACTCCCCGGCCTCAGGAGAGACGTGGATGCGTCAGGTGGTCAGCTTCGACAAACTTAAACTGACCAACAACGAACTGGACGATCAGGGACATATCATTCTGCACTCCATGCACAAGTACCAGCCGCGGGTCCATGTGATCCGTAAGGAGTGTGGAGAGGAGTTATCCCCAGTGAGAGCCATCCCTGCTGGGGAAGGCACCCGCACCTTCGCCTTCCCTGAGACGGTGTTCACCACCGTCACAGCGTATCAGAATCAACAGattacaaGGCTGAAAATTGACAGAAACCCATTTGCCAAAGGCTTCAGAGACTCTGGCAGAAACCGGATGGGTCTGGAGGCTTTGGTTGAGTCTTATGCATTCTGGCGCCCATCTCTGCGAACGCTCACATTTGAGGACATCCCTGGCATTACCAAGCAAGGGATCCCAGGAGTTCATGGTGGGATCGGACCATCATCTCACCTGCTCTCCACGTCCCCGTGCTCCTCACCTTTCCAGGTCTGCCCTCTCAGCCCGCCTGACTACACCTGCAGCCGACCCACACACCCTCTCCATCGCTACAGCAACCCCCCGGAGCCGTTCCCCCCTCCCAGAGGTCCATCGGCGTATGAGGGCGAAGGATTCTGTTCTCTGCCTCTCCCTGCTTCTCAATTTGGCTATCTATCCAACCCCACGCCGCAGGGTTACGCTGGGCTTCGCCTCCACACACCGCCCTACAGCCTGTACGGTTACACATTCCCTCCCTCGCCGCGCCTTGCAGCCAGCCCTGATAAAATGGCTGCCGCTGCCACTGCCAATCATCAGAGTCCCTTCCTTGGCTCGTCTCCCAGTGGGACTCTAACGGACAGTCTGGGTGTACTCAGTGGAGGACAGCAGGGCTTCTTGTTTGACTCCCGGACTTTAGGACTGACAGGTAGCCAGCCGGGAGGCGGGGCCTCACAGGTCACTGCCCACATGGGCTGAATACGACTCCGGACATCTAGCGTTGTCACGAAAAACGAAACTGGTTCAGAACGTTCTACGAATTAATCACCCACGTGCTGAAAAAGCATCAGGCTGAATTGTGGACAAACAGAGAGGAGTGACAGATCAAGCCATTGGCCTCTGTGAGCATAAAGAGCTTTTAACTGAAGGGAATATTTTTTACGTTCTTATCTTTTAAGTATGTTCTCTAGGACAATGCACATGCAGCTGCAGTGGTCACTAAAGGGAGAAACTACCTGCAGCTTTGGATAAGGAGTCCAAACGATGTAACCAGCAACTAAACTGGAGCTGAATATGGACTGGGCAGAAACTGGGCTGGCCCAGGCACTCAAAGCAAGCACTTCAACACCTGGCACGAGGCCTTGAAGCAGTAACTGTTAGACTCACACAGCATTCTACATTGCCTCCTTGATCTTGCCTACTTTGGATGGAGTTTCTGAACACTACTTTTGAACTTGTTTTTTACGGGATACATTGACTAAATTCCTTTCGTCAGTTCAATTCTTCGTCATTACATGCCTGGCGGTGTTCTCGATCAAATCTTTGGAATAACAAACATGTAGTCCATCTAGTAATAATGCACTACAGGCAGGGCCGTATCACCACTTTTTACACACAACACCAGGAGCCTGTCACATATTAGCGTGATGACATCATGGCCTTAAGAGACCATGGGAGATATCCCAGTGACAGTTATGGACTGACGAGGTTAAAGCTGTGGGAGAATTATGGATGAAGGACTGATCTACGTATTCTACGTCTGGTTTGACAGATGTTTCTTTGATGCAGCTGTTTTGATGGCAGGCTGAAGTACACCTTCCTTTGTGGGACACAGGCGCAACTGTGCAAGATGACTCTGTATATAGCGAGGGGAAGGCGGGTGGGAGgagagatgtgtgtgtatataaaaggCTGTGTGACCCTTCGCACTTAAAAACCCCAATGCACCTGCTTCTGCTCTTTAGACTGGGTCAGGTATGCAACAGCCGACCGTGAACTTGACCGAAAAGCTTTTCTTCGCAAACACGCGCTATATCAGCACGCCCTTTGGCCGAGGACATTAACATGTTCTGTGACCTTTTTTGAgccaaataaaatataaatgtatgtattcaTGTCACAATGTTAATATGTAATCAATATCTTACTAATTTAACTGATTTCGTTTTGTTTATGGCAATTGTGAAcatgccagtgtgtgtgtgggagcgttttctttccacatttttttttttaaaagtgaagCAATTGCTTACAATATAATATTTccttgtgaaaacaaaaaaagtacgCTTACTGTTCTCCCTTATGTATGTGCTAGTGgcattgtgaatgtgtgtgtgtctgtgtgcgatAAAGCAGTCAATGATT
>XM_039780899.1
TCCACTAAGCTCCGGTTGTTGACACTCTCCAAAAGTCCGCACGGCTCTCACGGATAACGGAGACATTATTAGGCTACAGCTCGTCCCGGCTCCCTCTGTTTCCTCTGCTGTCCGGCTCCAGGACGGACAACCCGTCGCACGGAAAGAACTGGACTGCCATCGTGGATTTCCTTGTTTTTCGACTCGGTGCGTTTTGAACTTTTCTTGCTCCCTGCAAGCTCGTGACGCCGTCTCTTTCCTCTCGTTCCTCTGCTCGGAGACCGAGAGAAATGGCAGAGAAGCGGCGGTCCCCGTGCGCGCTGAGTGTTAAGGCGCATGCATTCTCGGTAGAGGCGCTGATCGGAGCCGAAAAGAGACGCAGGAAGGCCGGGGAGGATGCTGTGTCCGCCGACTACGAGGACGGAACTGATGTATCTGATCTAACCGGCAGCCCGGGGCCGCGAGCCGACCGAGCGTGCACCAGCGACCGGGGCAGCGAGGCAGAATGTGCAAGTGACGGATCCCAGAGCGAGGACGCGCTGCTCGAGAGCCCGCAGCCTGCAGCTCCGTGCACGGCGCCGGTAACCGCGAGCGGAGAGGAGACCCGCGTGGAACTGCAAGGATCAGACCTGTGGAAACGGTTCCACGAGATTGGCACGGAAATGATCATTACCAAGGCTGGACGGCGGATGTTCCCTGCTATGCGTGTGAAGATTACGGGCTTGGACCCACATCAGCAGTATTACATTGCCATGGATATAATCCCCGTGGACAACAAACGatacagGTACGTGTACCACAGCTCCAAGTGGATGGTAGCGGGGAATGCGGACTCGCCTGTGCCGCCCAGAGTGTACATCCACCCGGACTCCCCGGCCTCAGGAGAGACGTGGATGCGTCAGGTGGTCAGCTTCGACAAACTTAAACTGACCAACAACGAACTGGACGATCAGGGACATATCATTCTGCACTCCATGCACAAGTACCAGCCGCGGGTCCATGTGATCCGTAAGGAGTGTGGAGAGGAGTTATCCCCAGTGAGAGCCATCCCTGCTGGGGAAGGCACCCGCACCTTCGCCTTCCCTGAGACGGTGTTCACCACCGTCACAGCGTATCAGAATCAACAGattacaaGGCTGAAAATTGACAGAAACCCATTTGCCAAAGGCTTCAGAGACTCTGGCAGAAACCGGATGGGTCTGGAGGCTTTGGTTGAGTCTTATGCATTCTGGCGCCCATCTCTGCGAACGCTCACATTTGAGGACATCCCTGGCATTACCAAGCAAGGGATCCCAGGAGTTCATGGTGGGATCGGACCATCATCTCACCTGCTCTCCACGTCCCCGTGCTCCTCACCTTTCCAGGTCTGCCCTCTCAGCCCGCCTGACTACACCTGCAGCCGACCCACACACCCTCTCCATCGCTACAGCAACCCCCCGGAGCCGTTCCCCCCTCCCAGAGGTCCATCGGCGTATGAGGGCGAAGGATTCTGTTCTCTGCCTCTCCCTGCTTCTCAATTTGGCTATCTATCCAACCCCACGCCGCAGGGTTACGCTGGGCTTCGCCTCCACACACCGCCCTACAGCCTGTACGGTTACACATTCCCTCCCTCGCCGCGCCTTGCAGCCAGCCCTGATAAAATGGCTGCCGCTGCCACTGCCAATCATCAGAGTCCCTTCCTTGGCTCGTCTCCCAGTGGGACTCTAACGGACAGTCTGGGTGTACTCAGTGGAGGACAGCAGGGCTTCTTGTTTGACTCCCGGACTTTAGGACTGACAGGTAGCCAGCCGGGAGGCGGGGCCTCACAGGTCACTGCCCACATGGGCTGAATACGACTCCGGACATCTAGCGTTGTCACGAAAAACGAAACTGGTTCAGAACGTTCTACGAATTAATCACCCACGTGCTGAAAAAGCATCAGGCTGAATTGTGGACAAACAGAGAGGAGTGACAGATCAAGCCATTGGCCTCTGTGAGCATAAAGAGCTTTTAACTGAAGGGAATATTTTTTACGTTCTTATCTTTTAAGTATGTTCTCTAGGACAATGCACATGCAGCTGCAGTGGTCACTAAAGGGAGAAACTACCTGCAGCTTTGGATAAGGAGTCCAAACGATGTAACCAGCAACTAAACTGGAGCTGAATATGGACTGGGCAGAAACTGGGCTGGCCCAGGCACTCAAAGCAAGCACTTCAACACCTGGCACGAGGCCTTGAAGCAGTAACTGTTAGACTCACACAGCATTCTACATTGCCTCCTTGATCTTGCCTACTTTGGATGGAGTTTCTGAACACTACTTTTGAACTTGTTTTTTACGGGATACATTGACTAAATTCCTTTCGTCAGTTCAATTCTTCGTCATTACATGCCTGGCGGTGTTCTCGATCAAATCTTTGGAATAACAAACATGTAGTCCATCTAGTAATAATGCACTACAGGCAGGGCCGTATCACCACTTTTTACACACAACACCAGGAGCCTGTCACATATTAGCGTGATGACATCATGGCCTTAAGAGACCATGGGAGATATCCCAGTGACAGTTATGGACTGACGAGGTTAAAGCTGTGGGAGAATTATGGATGAAGGACTGATCTACGTATTCTACGTCTGGTTTGACAGATGTTTCTTTGATGCAGCTGTTTTGATGGCAGGCTGAAGTACACCTTCCTTTGTGGGACACAGGCGCAACTGTGCAAGATGACTCTGTATATAGCGAGGGGAAGGCGGGTGGGAGgagagatgtgtgtgtatataaaaggCTGTGTGACCCTTCGCACTTAAAAACCCCAATGCACCTGCTTCTGCTCTTTAGACTGGGTCAGGTATGCAACAGCCGACCGTGAACTTGACCGAAAAGCTTTTCTTCGCAAACACGCGCTATATCAGCACGCCCTTTGGCCGAGGACATTAACATGTTCTGTGACCTTTTTTGAgccaaataaaatataaatgtatgtattcaTGTCACAATGTTAATATGTAATCAATATCTTACTAATTTAACTGATTTCGTTTTGTTTATGGCAATTGTGAAcatgccagtgtgtgtgtgggagcgttttctttccacatttttttttttaaaagtgaagCAATTGCTTACAATATAATATTTccttgtgaaaacaaaaaaagtacgCTTACTGTTCTCCCTTATGTATGTGCTAGTGgcattgtgaatgtgtgtgtgtctgtgtgcgatAAAGCAGTCAATGATT

Function

symbol description
tbx18 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including morphogenesis of embryonic epithelium; regulation of transcription by RNA polymerase II; and somitogenesis. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including fin bud; medial longitudinal fasciculus; pectoral fin; pericardial region; and proepicardial cluster. Human ortholog(s) of this gene implicated in CAKUT2. Orthologous to human TBX18 (T-box transcription factor 18).

NR:

description
T-box transcription factor TBX18-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10183 TBX18; T-box protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780898.1 True 3203 mRNA 0.52 8 13056433 13066587
XM_039780899.1 False 3200 mRNA 0.52 8 13056433 13066587

Neighbor

gene id symbol gene type direction distance location
selenoi selenoi coding upstream 133877 12908967 ~ 12922556 (+)
agbl5 agbl5 coding upstream 149128 12889261 ~ 12907305 (+)
ccdc85cb ccdc85c coding upstream 365633 12640656 ~ 12690800 (+)
LOC120546362 NA coding upstream 417908 12632013 ~ 12638525 (+)
LOC120546363 NA coding upstream 426579 12617707 ~ 12629854 (+)
irak1bp1 NA coding downstream 73394 13139981 ~ 13141521 (+)
enpp5 enpp5 coding downstream 154519 13221106 ~ 13228478 (+)
clic5b clic5,LOC104958973,LOC107378135,LOC106964163,LOC103355727 coding downstream 163379 13229966 ~ 13249155 (+)
opn8a NA coding downstream 322228 13388815 ~ 13412812 (+)
opn8b NA coding downstream 354721 13421308 ~ 13431771 (+)
G183933 NA non-coding upstream 308766 12746084 ~ 12747667 (+)
G183896 ccnk non-coding upstream 353191 12701168 ~ 12703242 (+)
G183891 NA non-coding upstream 416355 12639318 ~ 12640078 (+)
G183890 NA non-coding upstream 418897 12629289 ~ 12637536 (+)
G183868 NA non-coding upstream 551310 12504685 ~ 12505123 (+)
G184000 phip non-coding downstream 104335 13170922 ~ 13172244 (+)
G184071 NA non-coding downstream 348653 13415240 ~ 13415570 (+)
G184074 NA non-coding downstream 367398 13433985 ~ 13434206 (+)
G184075 NA non-coding downstream 367625 13434212 ~ 13434504 (+)
G184078 mut non-coding downstream 376456 13443043 ~ 13449099 (+)
LOC120546167 NA other upstream 48022 12946999 ~ 13008411 (+)
bcl11bb LOC103368061 other upstream 317049 12707218 ~ 12739384 (+)
ches1 foxn3 other upstream 1187241 11764143 ~ 11869192 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 2389961 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 2656621 10236949 ~ 10399812 (+)
G183994 phip other downstream 78888 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 401648 13468235 ~ 13474159 (+)
LOC120546742 plcb1 other downstream 957897 14024484 ~ 14140769 (+)
G184231 NA other downstream 1295754 14362341 ~ 14381187 (+)
LOC120546619 LOC103359912,LOC102080314 other downstream 1326853 14393440 ~ 14424864 (+)

Expression


Co-expression Network