LOC120546190 (l3hypdh)


Basic Information

Item Value
gene id LOC120546190
gene name l3hypdh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18814609 ~ 18818443 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780964.1
TTCCATTGACCGTTTTCCTCATCATCAGTGCTGATATGGAAATAGTAGCTTATAAATATTTGTCAGTTTCTTAAAGCAAGTTCAGACGTCTGCAAACAATGCCTGGCATTCGGATtcatgcatatacagtatgcagCCCTCCAGAACACAAGGTGGCACTAATGACTTAATTTAGTGTCTTTGCAAACTGAAACACGCATGCGCAGAACAAAAACCAAAAAGACGAGTTCTGcacttcttatatactgtctatggttctgCAGAAGTTTGGCCCATAGTATCAGAGAATATCTAAACCAGCTTAACACAGGTGATCATCCGACTGGGCACTTACCTGTTCTCCTCCATTTGCTGTCAGTTCAGATGGAACTGCAGCTTCCACCTCATGAGGGAGAGGAGCTCTCAGTGGTTGACATGCACACAGGTGGAGAACCTTTACGGATCATCCACAGCGGCTACCCAGAGGTCAAAGGTGACAGTGTGCTGTCCAAACGTCGTTATGTCCGGGAACATCTGGATCACCTCAGGAGGGTGCTGATGTACGAGCCGCGGGGACACTACGACATGTACGGAGCCCTGATTGTGGACAGCGAGGTACCTGAGGCGGATCTGGGGGTGCTGTTCATGCACAACGAGGGGTACAGCACCATGTGTGGCCACGCAGTCATCGCACTGGGGCGCTTCGCTGTGGACTACAAACTGGTGAAAGAACCACAGTCACCAGAGACCCAAGTGAACATCCACTGTCCCTGTGGTCTGGTGAAGGCGTTTGTCGAGTACTCTGATGGTAAAACAGGAGGAGTGAGGTTTCTCAGCGTGCCAGCGTTTGCATTTGCTACAGATGTGAAGGTGACGGTGGAAAGGTTTGGTGAAGTGACTGTTGACATCAGCTATGGAGGAGCCTTCTACGCCTTTGTAGACGCCCAGAGGTTTGGCCTCGATGTGACCAAGTCCAGGACCCGAGATCTGGTAGATGCAGCCACAGCAGTGACCAATGCTGTCAAATGTCAGGTGAAGTTGCACCACCCAACCAGTGATGATCTGGCCTTCCTCTACGGCACCATCCTCACAGATGGCAAAGATAATTACTCCTCCGATCCCACCGCCaatatctgtgtgtttgctgaAGCACAGGTGGACCGGAGCCCCACTGGTTCTGGTGTTACAGCCCGAGTGGCTCTCCAGTATCACAAAGGTCTCATCCAGCTGAACCAGACCAGGACGTTTCAGAGTGGAGCCACTGAGTCCCAGTTCACAGGGAAAGCTGTTGAGGTACCAGTTTTCTTCAGTGCCCGTGTGCGCCCCTCTGCCCTAAGTCACTCTGGAGACAAAGTGTGGAGACTTCAAGGCTGTCGTGGTGGAAGTTGCCGGCAGAGCTTTTTACACCGGAGTTTCACGCTTTGTGCAGGAGCCAGATGACAAGCTGACTCATGGTTTTCTCCTGAAGTGAGCCTCAATTACAGGTTGTGGTATTAAATATGGTTGTACAtaaaaagtactttaaacaTTAGTTAAAAAGTTGCGTTTATAGCTTAAAAAACTATAGAAAATCCCTATGCTCTCCAAGAAGAGTATTGGATATGTAATAAACTTTGTTAAAGAGATTGTATCAACATTTTCTGTTggttttcctttgtaattatggcCTGTGCCCAACCACTGACTCATAAGGTTAGAAACAAGACAAATGTACGCTGCCTGTGACTTTTCCTTTGCAACGCGATGACCTCAGTCGTattacattaataaatgtaCGTACTATTTTGTTTA
>XM_039780965.1
CAAACTGAAACACGCATGCGCAGAACAAAAACCAAAAAGACGAGTTCTGcacttcttatatactgtctatggttctgCAGAAGTTTGGCCCATAGTATCAGAGAATATCTAAACCAGCTTAACACAGGTGATCATCCGACTGGGCACTTACCTGTTCTCCTCCATTTGCTGTCAGTTCAGATGGAACTGCAGCTTCCACCTCATGAGGGAGAGGAGCTCTCAGTGGTTGACATGCACACAGGTGGAGAACCTTTACGGATCATCCACAGCGGCTACCCAGAGGTCAAAGGTGACAGTGTGCTGTCCAAACGTCGTTATGTCCGGGAACATCTGGATCACCTCAGGAGGGTGCTGATGTACGAGCCGCGGGGACACTACGACATGTACGGAGCCCTGATTGTGGACAGCGAGGTACCTGAGGCGGATCTGGGGGTGCTGTTCATGCACAACGAGGGGTACAGCACCATGTGTGGCCACGCAGTCATCGCACTGGGGCGCTTCGCTGTGGACTACAAACTGGTGAAAGAACCACAGTCACCAGAGACCCAAGTGAACATCCACTGTCCCTGTGGTCTGGTGAAGGCGTTTGTCGAGTACTCTGATGGTAAAACAGGAGGAGTGAGGTTTCTCAGCGTGCCAGCGTTTGCATTTGCTACAGATGTGAAGGTGACGGTGGAAAGGTTTGGTGAAGTGACTGTTGACATCAGCTATGGAGGAGCCTTCTACGCCTTTGTAGACGCCCAGAGGTTTGGCCTCGATGTGACCAAGTCCAGGACCCGAGATCTGGTAGATGCAGCCACAGCAGTGACCAATGCTGTCAAATGTCAGGTGAAGTTGCACCACCCAACCAGTGATGATCTGGCCTTCCTCTACGGCACCATCCTCACAGATGGCAAAGATAATTACTCCTCCGATCCCACCGCCaatatctgtgtgtttgctgaAGCACAGGTGGACCGGAGCCCCACTGGTTCTGGTGTTACAGCCCGAGTGGCTCTCCAGTATCACAAAGGTCTCATCCAGCTGAACCAGACCAGGACGTTTCAGAGTGGAGCCACTGAGTCCCAGTTCACAGGGAAAGCTGTTGAGGAGACAAAGTGTGGAGACTTCAAGGCTGTCGTGGTGGAAGTTGCCGGCAGAGCTTTTTACACCGGAGTTTCACGCTTTGTGCAGGAGCCAGATGACAAGCTGACTCATGGTTTTCTCCTGAAGTGAGCCTCAATTACAGGTTGTGGTATTAAATATGGTTGTACAtaaaaagtactttaaacaTTAGTTAAAAAGTTGCGTTTATAGCTTAAAAAACTATAGAAAATCCCTATGCTCTCCAAGAAGAGTATTGGATATGTAATAAACTTTGTTAAAGAGATTGTATCAACATTTTCTGTTggttttcctttgtaattatggcCTGTGCCCAACCACTGACTCATAAGGTTAGAAACAAGACAAATGTACGCTGCCTGTGACTTTTCCTTTGCAACGCGATGACCTCAGTCGTattacattaataaatgtaCGTACTATTTTGTTTA
>XM_039780966.1
AATTTAGTGTCTTTGCAAACTGAAACACGCATGCGCAGAACAAAAACCAAAAAGACGAGTTCTGcacttcttatatactgtctatggttctgCAGAAGTTTGGCCCATAGTATCAGAGAATATCTAAACCAGATGGAACTGCAGCTTCCACCTCATGAGGGAGAGGAGCTCTCAGTGGTTGACATGCACACAGGTGGAGAACCTTTACGGATCATCCACAGCGGCTACCCAGAGGTCAAAGGTGACAGTGTGCTGTCCAAACGTCGTTATGTCCGGGAACATCTGGATCACCTCAGGAGGGTGCTGATGTACGAGCCGCGGGGACACTACGACATGTACGGAGCCCTGATTGTGGACAGCGAGGTACCTGAGGCGGATCTGGGGGTGCTGTTCATGCACAACGAGGGGTACAGCACCATGTGTGGCCACGCAGTCATCGCACTGGGGCGCTTCGCTGTGGACTACAAACTGGTGAAAGAACCACAGTCACCAGAGACCCAAGTGAACATCCACTGTCCCTGTGGTCTGGTGAAGGCGTTTGTCGAGTACTCTGATGGTAAAACAGGAGGAGTGAGGTTTCTCAGCGTGCCAGCGTTTGCATTTGCTACAGATGTGAAGGTGACGGTGGAAAGGTTTGGTGAAGTGACTGTTGACATCAGCTATGGAGGAGCCTTCTACGCCTTTGTAGACGCCCAGAGGTTTGGCCTCGATGTGACCAAGTCCAGGACCCGAGATCTGGTAGATGCAGCCACAGCAGTGACCAATGCTGTCAAATGTCAGGTGAAGTTGCACCACCCAACCAGTGATGATCTGGCCTTCCTCTACGGCACCATCCTCACAGATGGCAAAGATAATTACTCCTCCGATCCCACCGCCaatatctgtgtgtttgctgaAGCACAGGTGGACCGGAGCCCCACTGGTTCTGGTGTTACAGCCCGAGTGGCTCTCCAGTATCACAAAGGTCTCATCCAGCTGAACCAGACCAGGACGTTTCAGAGTGGAGCCACTGAGTCCCAGTTCACAGGGAAAGCTGTTGAGGTACCAGTTTTCTTCAGTGCCCGTGTGCGCCCCTCTGCCCTAAGTCACTCTGGAGACAAAGTGTGGAGACTTCAAGGCTGTCGTGGTGGAAGTTGCCGGCAGAGCTTTTTACACCGGAGTTTCACGCTTTGTGCAGGAGCCAGATGACAAGCTGACTCATGGTTTTCTCCTGAAGTGAGCCTCAATTACAGGTTGTGGTATTAAATATGGTTGTACAtaaaaagtactttaaacaTTAGTTAAAAAGTTGCGTTTATAGCTTAAAAAACTATAGAAAATCCCTATGCTCTCCAAGAAGAGTATTGGATATGTAATAAACTTTGTTAAAGAGATTGTATCAACATTTTCTGTTggttttcctttgtaattatggcCTGTGCCCAACCACTGACTCATAAGGTTAGAAACAAGACAAATGTACGCTGCCTGTGACTTTTCCTTTGCAACGCGATGACCTCAGTCGTattacattaataaatgtaCGTACTATTTTGTTTA
>XM_039780967.1
ACCAAAAAGACGAGTTCTGcacttcttatatactgtctatggttctgCAGAAGTTTGGCCCATAGTATCAGAGAATATCTAAACCAGGcACCGAGATGGAACTGCAGCTTCCACCTCATGAGGGAGAGGAGCTCTCAGTGGTTGACATGCACACAGGTGGAGAACCTTTACGGATCATCCACAGCGGCTACCCAGAGGTCAAAGGTGACAGTGTGCTGTCCAAACGTCGTTATGTCCGGGAACATCTGGATCACCTCAGGAGGGTGCTGATGTACGAGCCGCGGGGACACTACGACATGTACGGAGCCCTGATTGTGGACAGCGAGGTACCTGAGGCGGATCTGGGGGTGCTGTTCATGCACAACGAGGGGTACAGCACCATGTGTGGCCACGCAGTCATCGCACTGGGGCGCTTCGCTGTGGACTACAAACTGGTGAAAGAACCACAGTCACCAGAGACCCAAGTGAACATCCACTGTCCCTGTGGTCTGGTGAAGGCGTTTGTCGAGTACTCTGATGGTAAAACAGGAGGAGTGAGGTTTCTCAGCGTGCCAGCGTTTGCATTTGCTACAGATGTGAAGGTGACGGTGGAAAGGTTTGGTGAAGTGACTGTTGACATCAGCTATGGAGGAGCCTTCTACGCCTTTGTAGACGCCCAGAGGTTTGGCCTCGATGTGACCAAGTCCAGGACCCGAGATCTGGTAGATGCAGCCACAGCAGTGACCAATGCTGTCAAATGTCAGGTGAAGTTGCACCACCCAACCAGTGATGATCTGGCCTTCCTCTACGGCACCATCCTCACAGATGGCAAAGATAATTACTCCTCCGATCCCACCGCCaatatctgtgtgtttgctgaAGCACAGGTGGACCGGAGCCCCACTGGTTCTGGTGTTACAGCCCGAGTGGCTCTCCAGTATCACAAAGGTCTCATCCAGCTGAACCAGACCAGGACGTTTCAGAGTGGAGCCACTGAGTCCCAGTTCACAGGGAAAGCTGTTGAGGTACCAGTTTTCTTCAGTGCCCGTGTGCGCCCCTCTGCCCTAAGTCACTCTGGAGACAAAGTGTGGAGACTTCAAGGCTGTCGTGGTGGAAGTTGCCGGCAGAGCTTTTTACACCGGAGTTTCACGCTTTGTGCAGGAGCCAGATGACAAGCTGACTCATGGTTTTCTCCTGAAGTGAGCCTCAATTACAGGTTGTGGTATTAAATATGGTTGTACAtaaaaagtactttaaacaTTAGTTAAAAAGTTGCGTTTATAGCTTAAAAAACTATAGAAAATCCCTATGCTCTCCAAGAAGAGTATTGGATATGTAATAAACTTTGTTAAAGAGATTGTATCAACATTTTCTGTTggttttcctttgtaattatggcCTGTGCCCAACCACTGACTCATAAGGTTAGAAACAAGACAAATGTACGCTGCCTGTGACTTTTCCTTTGCAACGCGATGACCTCAGTCGTattacattaataaatgtaCGTACTATTTTGTTTA
>XM_039780968.1
ttatttttttaaatcggcACCGAGATGGAACTGCAGCTTCCACCTCATGAGGGAGAGGAGCTCTCAGTGGTTGACATGCACACAGGTGGAGAACCTTTACGGATCATCCACAGCGGCTACCCAGAGGTCAAAGGTGACAGTGTGCTGTCCAAACGTCGTTATGTCCGGGAACATCTGGATCACCTCAGGAGGGTGCTGATGTACGAGCCGCGGGGACACTACGACATGTACGGAGCCCTGATTGTGGACAGCGAGGTACCTGAGGCGGATCTGGGGGTGCTGTTCATGCACAACGAGGGGTACAGCACCATGTGTGGCCACGCAGTCATCGCACTGGGGCGCTTCGCTGTGGACTACAAACTGGTGAAAGAACCACAGTCACCAGAGACCCAAGTGAACATCCACTGTCCCTGTGGTCTGGTGAAGGCGTTTGTCGAGTACTCTGATGGTAAAACAGGAGGAGTGAGGTTTCTCAGCGTGCCAGCGTTTGCATTTGCTACAGATGTGAAGGTGACGGTGGAAAGGTTTGGTGAAGTGACTGTTGACATCAGCTATGGAGGAGCCTTCTACGCCTTTGTAGACGCCCAGAGGTTTGGCCTCGATGTGACCAAGTCCAGGACCCGAGATCTGGTAGATGCAGCCACAGCAGTGACCAATGCTGTCAAATGTCAGGTGAAGTTGCACCACCCAACCAGTGATGATCTGGCCTTCCTCTACGGCACCATCCTCACAGATGGCAAAGATAATTACTCCTCCGATCCCACCGCCaatatctgtgtgtttgctgaAGCACAGGTGGACCGGAGCCCCACTGGTTCTGGTGTTACAGCCCGAGTGGCTCTCCAGTATCACAAAGGTCTCATCCAGCTGAACCAGACCAGGACGTTTCAGAGTGGAGCCACTGAGTCCCAGTTCACAGGGAAAGCTGTTGAGGTACCAGTTTTCTTCAGTGCCCGTGTGCGCCCCTCTGCCCTAAGTCACTCTGGAGACAAAGTGTGGAGACTTCAAGGCTGTCGTGGTGGAAGTTGCCGGCAGAGCTTTTTACACCGGAGTTTCACGCTTTGTGCAGGAGCCAGATGACAAGCTGACTCATGGTTTTCTCCTGAAGTGAGCCTCAATTACAGGTTGTGGTATTAAATATGGTTGTACAtaaaaagtactttaaacaTTAGTTAAAAAGTTGCGTTTATAGCTTAAAAAACTATAGAAAATCCCTATGCTCTCCAAGAAGAGTATTGGATATGTAATAAACTTTGTTAAAGAGATTGTATCAACATTTTCTGTTggttttcctttgtaattatggcCTGTGCCCAACCACTGACTCATAAGGTTAGAAACAAGACAAATGTACGCTGCCTGTGACTTTTCCTTTGCAACGCGATGACCTCAGTCGTattacattaataaatgtaCGTACTATTTTGTTTA

Function

symbol description
l3hypdh Predicted to enable trans-L-3-hydroxyproline dehydratase activity.

NR:

description
PREDICTED: trans-3-hydroxy-L-proline dehydratase isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0018112 proline racemase activity molecular_function

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780964.1 True 1770 mRNA 0.48 7 18814609 18818443
XM_039780965.1 False 1535 mRNA 0.48 7 18814792 18818443
XM_039780966.1 False 1539 mRNA 0.48 6 18814777 18818443
XM_039780967.1 False 1502 mRNA 0.49 6 18814822 18818443
XM_039780968.1 False 1431 mRNA 0.49 5 18816155 18818443

Neighbor

gene id symbol gene type direction distance location
LOC120546186 kcnh5,LOC103364987 coding upstream 895 18798257 ~ 18813714 (+)
LOC120546187 acss1,LOC100712210,LOC102211118,LOC102308435,LOC101486165,LOC103364973 coding upstream 35507 18761417 ~ 18779102 (+)
LOC120547336 LOC104951086,LOC103372628 coding upstream 53721 18754893 ~ 18760888 (+)
eif2b2 eif2b2 coding upstream 76918 18733328 ~ 18737691 (+)
tmed10 tmed10 coding upstream 91623 18717023 ~ 18722986 (+)
trnae-cuc_27 NA coding downstream 113873 18932316 ~ 18932387 (+)
gata4 gata4,LOC102782453 coding downstream 129877 18948320 ~ 18958802 (+)
fdft1 fdft1 coding downstream 147763 18966206 ~ 18977451 (+)
ctsbb ctsb,LOC104947341 coding downstream 159387 18977830 ~ 18981178 (+)
LOC120546316 LOC104947340,LOC103364984,LOC107377588,LOC106510778 coding downstream 163734 18982177 ~ 18989774 (+)
G185471 NA non-coding upstream 109375 18703965 ~ 18705234 (+)
LOC120546607 NA non-coding upstream 124576 18666640 ~ 18690033 (+)
G185415 LOC106525279 non-coding upstream 169455 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 174228 18636374 ~ 18640381 (+)
LOC120546827 NA non-coding upstream 350581 18443952 ~ 18464028 (+)
G185495 daam1,LOC108240128 non-coding downstream 641 18819084 ~ 18821146 (+)
G185589 NA non-coding downstream 196283 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 204253 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 205821 19024264 ~ 19024578 (+)
G185592 kcnk2 non-coding downstream 224781 19043224 ~ 19043548 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 102615 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 179557 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 674349 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 759683 18020956 ~ 18054926 (+)
G185237 NA other upstream 897361 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 385711 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 536173 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 549277 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 611152 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 754130 19572573 ~ 19620783 (+)

Expression


Co-expression Network