LOC120546239


Basic Information

Item Value
gene id LOC120546239
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19328007 ~ 19333616 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781031.1
CCTTGAGAGTCCGAGCTCCACACTTCATGAGTCTATAAAAAGAGCTTTCCTCTTCTGAGGAAGCAACAGCAGACCCTCTCCTACTGAGCATTTCATTGCAGAGCAGAGAGAAagcagaagaggaggagagggatcGCCACTCTGGAAGATCTGTGGCCAAACGGAGGGAGAAAAAcaagaagagaggaaaagaacGCTTTTggaaaagATGGTGTGTCAATGGTGGTTGCTAGTGGTGGTGATGGCGTATGTGTGCCACCCCGGGTTTGGGTCGGTGTGCTGGGAGAGCTCCATCTGCAACGACCTGCGCAACAAGGGAAGGATACTGGACTGCATTCAGCTGTGCATGTCTGTGATCCAGACGAAACTCCCACAGTTCAGTGCATTAGCCCAGAAGGTtaatgatgatgacgatgatgatgaccTAATACTAAGCATCATTCTGGCCACCCTGGAGTCTGAAAACAAGATATCAGAGACAGATCTGAAAGCCCACAGTGACGAGCGACGCTCCTATTCAATGGAGCATTTCCGCTGGGGCAAACCCTCAGGCCGTAAACGCCGGCCTGTGAAGGTTTTTGCCTCTTCTCTGGAGGGAGGAGGCTTGTCTGAGGGCAGTTTCCTCCCTCAGGCTCGCAGGCAGCTGAACAGCTATGAGGATGAAGTGAAGCTGAATGGAGAAAGTCAAAACCAGGCAGTGCCAAGGGCGAGGGTCAGCTCCCTGTCACATGTCCCGTTGAGCTCGAACGAGAGAAAAGACGGGACCTACCGGATGAGTCACTTCAGATGGGGGAGCCCACCTGCCTCTAAACGTAATGGCAGCTTTATGAAACCGTGGGAGAAGAAACCTCAGGGGCAGCTGGCTAAGCTCTTCAGGAACAATATAGTCAAGAATGTGCAGAAGATAGTGGGCTGAATGGAGGAGTAGTTGAAAGAATCTAAAAGCCATCGCATGTTAGTAGGTACCCAAAGGTCTTAATATTAAATTACAGAAACTTGTCACTATCATTAGCATGTTGTTGAGTGTCTTTTCTGGACCAAAGGTTTTTTCTCATTAAAACCTTAACTAAAAACAAGAAACAAGGCAGTTTTATGTAAACAATAATGCACCCACAGACTGCCTTGAAATTCTTGGTCTGAATTGAAagctttctttttatttttcttgtgtGCAGCATCATTATATTGATAGGCTATAGGCTATATGTTTTGGAAAAAACAGAGAATGAAATTCCAGTGCAAGAGGTGGGTGTGAATGAAAgtgttaaaaataatatatcCAGTTTATTTACAGAGtggtatttttttgtaaattaataTGAtattaaagttattaaaaataaagatcatTCTGTTTGTGGCAAACACTA

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781031.1 True 1370 mRNA 0.45 3 19328007 19333616

Neighbor

gene id symbol gene type direction distance location
smyd2b smyd2,LOC103360985 coding upstream 58609 19260262 ~ 19269398 (+)
rps6kc1 rps6kc1 coding upstream 201348 19102583 ~ 19126659 (+)
moxd1l NA coding upstream 225587 19097059 ~ 19102420 (+)
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding upstream 251525 19070669 ~ 19076482 (+)
prkg3 LOC104947339,LOC103364985,LOC100708987,LOC101479945 coding upstream 324977 18990946 ~ 19003030 (+)
parp1 parp1,LOC102777090 coding downstream 57389 19391005 ~ 19403199 (+)
lin9 lin9 coding downstream 70240 19403856 ~ 19412698 (+)
si:ch211-225h24.2 tdrp coding downstream 251086 19584702 ~ 19598107 (+)
LOC120546417 NA coding downstream 366106 19699722 ~ 19703391 (+)
si:dkey-119f1.1 smc6 coding downstream 379048 19712664 ~ 19731224 (+)
G185656 NA non-coding upstream 48650 19278107 ~ 19279357 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 244223 19082696 ~ 19083784 (+)
G185593 NA non-coding upstream 281900 19045414 ~ 19046107 (+)
G185592 kcnk2 non-coding upstream 284459 19043224 ~ 19043548 (+)
G185591 kcnk2 non-coding upstream 303429 19024264 ~ 19024578 (+)
G185696 NA non-coding downstream 219658 19553274 ~ 19554235 (+)
G185711 NA non-coding downstream 318621 19652237 ~ 19652575 (+)
G185716 tmem18 non-coding downstream 358520 19692136 ~ 19693056 (+)
G185793 NA non-coding downstream 374715 19708331 ~ 19708930 (+)
G185794 NA non-coding downstream 375598 19709214 ~ 19709512 (+)
LOC120546624 prox1 other upstream 90974 19204154 ~ 19237033 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 616013 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 692955 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 1187747 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 1273081 18020956 ~ 18054926 (+)
acbd3 acbd3,LOC102799892 other downstream 21000 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 34104 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 95979 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 238957 19572573 ~ 19620783 (+)
acp1 acp1 other downstream 299884 19633500 ~ 19648156 (+)

Expression


Co-expression Network