tmem200a (tmem200a)


Basic Information

Item Value
gene id tmem200a
gene name tmem200a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15853810 ~ 15877749 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781050.1
TGAAAGCCTCTCACATTCCCACAAGCGCTTTATTGGAGGAATTGGATGGGGCTGCCCGCGTCTCTCCGACTCAGAGGAATAAAAATACGCTTTACTCGCCGTTCAACGTTTTCCGTTCAGACGGAACAACGTGATGCAGAGAATTTCTACAAGAgagttttatctttttttttcttttctttgacgTGAAGTCAAGTTTTTGGATGCGAATATCGGGAGAGAGTTTTACGCCCAGGAGGGACTTCACATCATGCGGCTTTTGTAGTCTCCCCCCCATGAAACAAGGAATATTTTCCGCAGGGAAATTACCACCTGAGCGTTTACGACTTTAAATAAGCGGAATGTTTTGTAATAAGGAGCGCCCTCATTGTCCTGAGCGCACATCGTCTCCGTATGGCGGAAAACGTGCTCCGCGGTAAATAAAGTCAACAACATAAGACACTTTAAAAGCTCGCAAACCCAATTGAACTGTGCTGCTGTTCCCAAGCCCTGCACGGGAGCTGAACTGCCTCCtgtcatttgattttttttacggCATGGCATTCAGTGGAAGTTGCTTTCAAATGGCTTTTTACTTTCCCCCAGGTTATAGCCTATAGGCTACCCTTTCCATGCCTAATGGCACAGTGAAAGTGAAACACTCGGATCTCTGCAAAGGTTAAGTATGACTGCAGCAGCAGGTGTGCTAACAGGCTTGGCTAAGCTAAAACGCCAAGACTCCGCCCGCTCTCAGCACCGGCCCTTACCTACATCGCCGGGCCTGGGAAACTCCGCCCCAGAAGCTGCCCCCAGAAAGCGGAAACGACGCACCGATGTTGTGGTAGTACGTGGTAGGCTCCGCCTCTACTCCGCCTCCGGGTTTTTCCTCCTCCTTGGACTGGTCATCTTGGCCATAGGGATCGCCATGGCGACGCTGGGTTACTGGCCCCACAGTGAAACCATGCCCTCGGCCAGATCGCCAACCGGAGGAGGATCTAAGCCAGCAACTGCTAGAGGAACATTTGGAGGAACATCtgccacaggagaaggaaacAGAGCCATGGTGGCCGTCACAGACAAGGACGTGGCTAACTCCAGCACGAGTCATAATGTGCAAGGTTCGCCCTCCAAGCAGACTGGGGGCGCTCTGACACGGTTCCTGGAACAGCATCGTCACTCTGAGAGGATGAAGATGTTCGGGCCTTTCACAATGGGCATTGGGATTTTCATCTTCATCTGTGCTAATGCCATTCTTCatgaaaacagagacagagaaactaAGATAATCCACATGAGAGACATGTACTCCACCGTCATTGACATCCATCGCCTCAGGCAGAGAGAGCAAAAGCAACACCATCACCGCAACAGCACCTATGCAAGAGAAGTTGGGGATCTTCGAGCCTTTGGAGCCGATAACGCAGCCTGGTTGGCCAGCAACTCTCCCCTGGCGTATTCCTCTCGGGCCGGAGGGGGAGGGTCtacagaagaagaggaggggcTGTTAGTGGACGAGGATTTTCACAGACACAGGGGGCAGGCCAAGCTGGATTGTAGCTTTGCGGGGCTGCTGGCGCCGCTCTACAAGGATCGCCCCTTCTGCGGCCCGGGCCTTGGGCTGGCTCGCTCAGATTCAGTACGCCACCAGTGGTCGGTGGACGGAGATGGGGGGAAGGGAGGACACCATGCACGCTCTATCGTTTCCTCCTCCTTATCTGCATTTACTCTCCCCGTTATAAAACTCAACAACTGCGTTATTGACGAGCCGGAGATGGAGGCGAtaactgaggaggagagaggaggagagaggagaggcggGCAGACGTCCCAGTCTCTGAGCTCCATGGAGTCTCTGGTGGTTCCTGTACCATCTGTTGCCAAGGCTTCCAAACCGCCAAGCTTACACCGGAGTAACtcggcctcctcttcctctcgctgctcctctgtctcctcttgcTCCCTCTCCCCTGCTCCCTCCTCTACCTCAGGCTGCTGGCTCTCCCCGGGAGCAGCAAGGAGTGACTTTGGCTCCAACTCCTCCTTGCACATGCTCGGCAGCCACTCCAAATCTCTGGACCTGGAGCGTAGGCCGAGCATGCTCAGCGTGCACCCCGAGCAGCGCAAGCACCCCAGCTGGCCCCGCCTCGACCGTAGCAACAGCAGCCGTAGTAACAGTGGCAATCGGGGCAGCAGTAAAGGCTACATGCGGCTGGAGGACAGGGAAAGCGAGCAAGGGGAGCGGCTGTTAGATGCGTCAATGTCTGTTACAGACAGGCGCGACTACAGTAAGCGGGAGAAGCTCCTAATGATATCCAGGTCGCATAATAATCTGAGTTTTGAGCACGACGAGTTTAACAGCAGTACACTGAAGAGGGGCAGCTCTGAGACTCGATTCTGAAGACGCTGAACTAAAGGTTGAAGACAGTTCTGTAAATTCGTCTCCAGACAGTATGAGTGTACAGCGCGGGAGAGAGGAAACTTAAACGTGGTTTcaaagaaacttttttttggaGCAGCAGGCTGGAGAGTAGTGAGTAATGGTCCATCTTGCGCAGTAGAAGATTCAGGGACGCTGAACGCCTGCTGTACCAGGTCCAGAGGTGCTGTTCCGTATTTGACCCTGACCTGTGAGCTCTGTTAAGGGAGACGTTCCCTACagggatcaataaaaaataaatcatatcaTCAGTCTCCTTTATACATAGTGTTAAATGCTTTCATTCCAGCAGCTGCTGGTATAATCAAGGACACACTGGAAGCACTTTGAGGAAGTTTCTCTCTCCGCAGGTGGCAGTGACACAAAGGCATAGACGCACTGAGGATAATAATGATCATTTTCAACTGATCTACTGGTCTCGACACAAAAACAGATATGAAAACTTAACCAGAATCAGCCTGTAACTTATAGCCTGGTGTAAACCTATATAAGAACACGTAATGGACAAGGCTCCAAAAGACATATCTTAGTAGTACAGGATTTGTTTATAAGGTGGttcatgtatgtctgtgtgtctgtttgatcCTCAGATCGTAGCAGATGTTGACATCCACACAAGTCAAACAAAACCAGTTACTATAACGTAAATACGCTACAGCACAGATATGAGTTAAATCAAGATGCTGCAGGCTGCAAAATACAATAACGGAGTCAATGTTGTCCTTGCTGCCCTTTCCCCAAGAAATATAGTAAGAAGTTTTGTATGTCTGCTAGAAAACTAAAAGTAACAATCTCCGTCTATGGCTTTGCTAGAGGCATCTTGAGTTTATTTCTTACTAGGAAAGATCTTGATTGACTTCACTCAGGATATCACGTTGTCTACGTTGATCATTTTTTTAGAGCTATTCACAAAGCTATTCAGTATTAGAGAAAGCCCtaacatttgaatatttataGACTTGAGTATGAAGTATGATAAATTAGGGTGGTAACCAATGATTATTCTCATTAGTTTAGTTCAGTATTTTGATCAATCAGTGCTCTAAATGTCAAAATTTATGACAAATAATCACATCTGAGGTACTTCTACTTGTTAAATGACTTAAACAATTGATTAAGAGAAATGTCATTGATTCATTTCAAGTCAATCAGCAATTTTTTTACTCTGCACTATTGAAAAAACAATATTTGAAACAAAAATCTGTATAAATGAGACTGTAATGTACTGCCATTTCACTCGAGCCAACAGTAAATCACCATGTGCACATTTATCTTGTGCTATATGTATAAACTGTGTGTATAAATCCAGGAAGCTGTAATATTTAAAGTCCAACTGAAGTTGTCTTGTCTGCTACAGCATACATATCTGCTTTTAAACAACAACCCACATTTGCTTTCCTGCTATCGTTTCCTTCTTATCTAACCTACAAAATTGAAAATACACGTCTTGCCCTTGTAGTTGTTGAACGAGCGACCAAACAAACATTCACTGAGGAAAAGTGAACAGCAACATCGGTTTGCAGGCTACATAGCTAATGAGCTGCTCAGCTGCAGCACATTAAACAGCATGTAGAAGTACCTGCAAACAGAACTTTGGTTCGGTTACCGTAGATGCTGGTTTTTAACACAGTCTTCACATGACATGTACACTACAGCACAAGTTTGTTTACTTTGTCTCTCGTTCCCTAGGGTGTAACACTGGCACTCTGGCAGCCTGCAAGCTACTGTCAATCAAACAAAGACACGCCTCTCCAGCCGGCTGAGACTAAAAGGAGCATTTCTGTTATTTCCCCCAAGACCTttaaaaaacagacacaaaactataaacaatgcattaaaaaaaaaaacatgttgacatTAGATATTTGACTGCAAAAAGGAATGTCCAAATGTAATTTCAGTTGGACTTTAAAATGTAAGCCATGCCATTTTCTTCTACAGTTGCCTTTGGCACATCTTGTGTTGCTTTTTATGTGTTTATAATATTTGGGACAATATTCACCACGCGATGATGACGATTGCAGGTTTGAATTCAGGAATTCAGCTACTGAGCAACATAGTAATAATGTCTCAGCATATTTTGTTATTAACATGTTGACAAGGTGAGTTGTCCCAAACTGAACATTTCTCTTGTCTATCTTTAGTATAGGAGCTGATACTGTATGACGCCTTCGTGTTGCTCGTTATCTCTGTTTCAGGTTCTGTTTGGTTTGTCATCTACCTTAAAGACACTGTCATTTTTGGAACACATTTATCAATGTTGTTCAAACCTGTTTTGTGCTAACTTTAATGCAACACACGTGAACGATAAAACAACACAACgtgtgttgaaaaaaacggAGCCCTTTTTAAAAGTGCAGGAATTGTACAGGAGAGCTTCATTAACTGGTTCCCAGCAGTTTATGGGTCAACGTCCAAAATAAATAGTATTTTCACTGAAA

Function

symbol description
tmem200a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in forebrain; midbrain; and retinal ganglion cell layer. Orthologous to human TMEM200A (transmembrane protein 200A).

NR:

description
PREDICTED: transmembrane protein 200A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781050.1 True 4857 mRNA 0.46 5 15853810 15877749

Neighbor

gene id symbol gene type direction distance location
ccn2a ctgf coding upstream 77593 15772660 ~ 15776217 (+)
stx7l stx7 coding upstream 114830 15730047 ~ 15738980 (+)
zfyve1 LOC100698556 coding upstream 166083 15680461 ~ 15687727 (+)
chac1 chac1 coding upstream 249644 15602335 ~ 15604166 (+)
dll4 dll4,LOC104955063 coding upstream 255917 15588083 ~ 15597893 (+)
itpkb itpkb coding downstream 108334 15986083 ~ 16014859 (+)
coq8aa coq8a coding downstream 139226 16016975 ~ 16042239 (+)
med23 med23 coding downstream 231603 16109352 ~ 16126914 (+)
rnf217 rnf217,LOC106571519 coding downstream 463189 16340938 ~ 16352655 (+)
tpd52l1 tpd52l1 coding downstream 479810 16357559 ~ 16375214 (+)
G184526 sel1l,LOC104966051,LOC107585782,LOC107721334 non-coding upstream 55016 15797815 ~ 15798794 (+)
G184521 NA non-coding upstream 73264 15777229 ~ 15780546 (+)
G184508 pigh non-coding upstream 173651 15678997 ~ 15680159 (+)
G184509 vps18 non-coding upstream 198290 15654846 ~ 15655520 (+)
G184481 NA non-coding upstream 360283 15493204 ~ 15493527 (+)
G184561 NA non-coding downstream 11616 15889365 ~ 15889585 (+)
G184540 NA non-coding downstream 48322 15926071 ~ 15927662 (+)
G184584 NA non-coding downstream 168060 16045809 ~ 16047681 (+)
G184618 NA non-coding downstream 413462 16291211 ~ 16356548 (+)
G184633 LOC101069623,LOC100711363,LOC102312356,LOC101478077,LOC102202636 non-coding downstream 533927 16411676 ~ 16413501 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other upstream 134178 15694944 ~ 15719632 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other upstream 190149 15660573 ~ 15663661 (+)
G184458 NA other upstream 534974 15301925 ~ 15318836 (+)
LOC120546207 NA other upstream 560558 15289674 ~ 15293252 (+)
hsp90aa1.1 LOC103369948 other upstream 718950 15129476 ~ 15134860 (+)
LOC120546249 NA other downstream 36837 15914586 ~ 15968123 (+)
nkain2 nkain2 other downstream 370345 16248094 ~ 16391851 (+)
cenpw NA other downstream 501730 16379479 ~ 16381856 (+)
G184628 LOC104949332,LOC106633454,LOC101477798,LOC102792991 other downstream 521689 16399438 ~ 16404077 (+)
vegfab vegfa other downstream 793837 16671586 ~ 16686079 (+)

Expression


Co-expression Network