stum (stum,LOC102783313)


Basic Information

Item Value
gene id stum
gene name stum,LOC102783313
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16045919 ~ 16061907 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781074.1
TAGAAAAAGGGGGCTTGTGTGTGCactttctctttgtctttgaGAGGTGTGTGGGTTGAGCGTGAtttgacagaaagaaagaaaaaaaaaggaagtgaaATTACTGAAAAGAGCTACACATCTTTCGAGGAtttcttttcaacattttttaaagaggAACTGTCATTTAGTCAACATTTCTTAAGAACATGTTGGACATGGAAACACATGACAGATATCAGTGACCTCTGATGAGACACTGTGCCCACTTTTGAGGACTTAAAGGGAATTGAGGAGAAGTCAACAGTCTTGAAGAGATTTTTCACCAAGAAAAAGTCTTGCTTTACTTATGACTTCTTGAGACTTCAACAGCTGGATCAGTCTAAAGGTTTTTAAAGTTCACTTTGGGATAATATTACAGGATATTTCATTGAGAGATTTAAACATTTATGGTATTGTGGCTATGGACATAAGATGATTTTCTTCAACCAATTTACCATAGAATTACACTCCTTTTAGTTGTTACTTATTTGCTAGTGAATGTGACATAAGTGGTGACTTGTGAGCCAACTGTTGATATGTACTGATAAATATTGTATCCAATTCTCAAAGGATACACTGAATCAAGATTGATTATTTTCGGCTTCTACTTCTTAGTCTAGAGGGAGAGTAACTGAGAggaaaaaatattcaaatcctTTTGTAGAAACCTTCAAAATACCCTCAACTAGTTTACCTGCATATTACCAGCTGTTTTCAGAGCTAATAAaccagaaagaggaaaagagacacGGCGAGATGGCACAGAAAGAGCAGTTCCGTGTTATGACCGGGGACCATCTTGGGGCCAAAGCCATTGCTGGGGCCCCTGCAGCAGGTGGAGGAGTGGTGGTGGAGGTCAGGGAGAAGAAGGGTCCTCTGAGGGCTGCGATACCCACAATGCCATTCCCTTTGGCTGTCATCTGTCTGTTTCTGAACACCTTCATACCTGGACTCGGTACCTTTATCTCAGCGTTCACGGTGCTGTGTGGCGCTCGCAGCGAGCTGATCTCAGAGCgaggtgtttgttgtgtgttctGGCTCAACGTGGCAGCAGCCCTCATCCAGATACTGACAGCTGTTATCATGGTTGGATGGATCATGAGCATCTTCTGGGGAATGGACATGGTCATCCTGGCAATTTCTGATGGATATAGAGACCAGGATCTTCCTCAGGATGTCTGAGAGAAGTTGCCTTTATGTCTGCTGATAGATCACGTGGACAGTGGCTGCTGGTGGCCTTTGTCTTTGTGATGACCTATGGCGGTTTGTCTTTCAAATGCCGGACCAAAGAGAAAAGCAGAGACGTTCAAATAAATTAGCCACACAGGGAAATAAATAAGGAAAGAATCAGCTGACTGCTTCTGGTTGCACTCTGCTGACTGGTTGAGACCACATTTAAGTTTAGGGATAAGGACAAGGAAAAAGAGACCAAATCTCATCAAAAAAACAATGTGTTGTTGAGTAATTACTATATAAGagtgatttattttctttttattctgtcttttgatattttttatttaatctttttgaaaaaaacataaatctgttaaaaagaaaaaaaaaaaaaaaaaaaacaaaactagaCCAGACTAAATGTTTCCTACATGCCAGGGAGGAGAAAAGGTAGAagaaaggaagatgtgttggaATGACTGTGTTAGAAAAATTAAGATATTGCTATGCGaactttatttctgtatttttgcaTACATAACAGTTTTTCCCGAAACCAGCGTCACCAGTTTTCACTGCCACTGAATTGGCTGCCCGGTGCAGCAGTCGCTCCGCTTAAAGCAGTTTATTTCAGGTTTAGATCATGTTACTGGATTTATTGCCGAGTTTTACTGTAACATGGTCTGTTTGAAAGACACCACGTCGCTGCTCTGAGGAGTAACTGTAGGGTACTTCACTGAGAGGTGAATTTGTTTCACCTTAATCAACTCTCAGAATAAAACATGTTCCATCTTCTCTAAGGTGTTACTGTTTACACATGGTACAAAGTCATGCTGCCTTGCCACTAAATATAAAAATCACTTATTTGACAATCATTCAAGCCATGAATGTGGAGAAAACATGTCTTCCACTGGAGCATGTGATCAAACTGTAAATGGATCTGATACTCAGTAGGTTTGAACTTAATTGTGGTAATCGATCAGCCTATAGTTATTGTAGCTACAATATTTTCCTTTcaggcaatgttttttttgtaatagcAAACACATCTTTAACACGCTGACTCTCACCAGCTGGTCACAAGATGTGTGTCATCCTAAAATTACAGGGCTGTGTGCAAAATGATTTACATTTTTCACACCTCTTAAACGTGTAAATCAGTGTCAGAGGGATATTACACATTGTTAGAACATTGTATCAAATTACCTTTATGCCACTCTGGAAGCATAGTCATCACCCTGTCTGCTCCTTATGACCAAGATACAGTTACTGTGATTGAGTTTGTGTCTGAGGCCGCATTGGTCCATGTAAAGTCAAAAATTCACGCAAGCAGATTACAAGAATATTAAATTCCGAAATATTTAGGTGTGTACATTGTGTCCGTATTAATGTGTATGTGAGATATTGGAAATGGAGGTTGGAGAATATATGATATGGCCTCAGTATAACTGTGGGAATGTGTGTAGTGTGGGAAGGTGTGTAGATGGATAATTCTATTATGTACAAgagtatttaaaaatatttaacacaAATTGCCTTGGAACTATGGATCCAAACAAAGCCTTTGCCATGATGCCACGTCAGCTTTCTCATGCACGGTATCATTGGCTCACTTCCCTGCAAAATATcctatcaaaagtcaaagaGCCTTTTTCAAAACTAATAAAACCAGCATAGCTTCAGACGCAACACTAAAGAAAAGTGGGGCACTAAATCGAAATCACTGTTTGTAGGAAGCTCAGTTACTGCTGAACAAACTGAATGAACTTCAACTCGGGCTATTTGACAAAATGCTATTTAAAGTACAACTCTTATAATATGGGACGGATTCAGCAAATGTGGATTGAATGATAAATTCATGATATATTTATTCATGCATAAACTTCATATTCACTGATTCTTTGTAATCCTGTAGGTTTTAAATATCTTCATTATCTTATCCAAATGCCTTTATTTTAAGAGTACTGCTGTATTTTGGATGGCAACACcaatgtttttctgtgtttatgtTGTACAGTGTTTGTATGTGAGACAGAttaggatgatgatgatgatgtctgtaATGTTGATATTTTATGCCTTACAAAATGACCATGTTCTCCCAGAAGTGTTAGCAGTGATGCTGGAgtttatttttgctttgtttgggtTCAGGTGCAATTTACAGATCTGAATCATTGTTATTTGGACACTTTATTATTATGATGGTGTTGTTGTGCTAGCTAGATTGTAGAACGAACATACTGCCATGTACAGTTTTTTTGCATGCATAGCTTTGGTGTCAAGTCActgtaataaaacacacacacacacacacacacacacacacacacacacacacacacacttaactaTTTTAGGATTGTAGCTTTTTTCTGTGACTTTGGAACATTGGTTTTATTTGAAGTTGTTTGAGGTGAtttgtaattaaaaaatattggttTTAATCACTGAA
>XM_039781075.1
AGAAAAAGGGGGCTTGTGTGTGCactttctctttgtctttgaGAGGTGTGTGGGTTGAGCGTGAtttgacagaaagaaagaaaaaaaaaggaagtgaaATTACTGAAAAGAGCTACACATCTTTCGAGGAtttcttttcaacattttttaaagaggAACTGTCATTTAGTCAACATTTCTTAAGAACATGTTGGACATGGAAACACATGACAGATATCAGTGACCTCTGATGAGACACTGTGCCCACTTTTGAGGACTTAAAGGGAATTGAGGAGAAGTCAACAGTCTTGAAGAGATTTTTCACCAAGAAAAAGTCTTGCTTTACTTATGACTTCTTGAGACTTCAACAGCTGGATCAGTCTAAAGCTGTTTTCAGAGCTAATAAaccagaaagaggaaaagagacacGGCGAGATGGCACAGAAAGAGCAGTTCCGTGTTATGACCGGGGACCATCTTGGGGCCAAAGCCATTGCTGGGGCCCCTGCAGCAGGTGGAGGAGTGGTGGTGGAGGTCAGGGAGAAGAAGGGTCCTCTGAGGGCTGCGATACCCACAATGCCATTCCCTTTGGCTGTCATCTGTCTGTTTCTGAACACCTTCATACCTGGACTCGGTACCTTTATCTCAGCGTTCACGGTGCTGTGTGGCGCTCGCAGCGAGCTGATCTCAGAGCgaggtgtttgttgtgtgttctGGCTCAACGTGGCAGCAGCCCTCATCCAGATACTGACAGCTGTTATCATGGTTGGATGGATCATGAGCATCTTCTGGGGAATGGACATGGTCATCCTGGCAATTTCTGATGGATATAGAGACCAGGATCTTCCTCAGGATGTCTGAGAGAAGTTGCCTTTATGTCTGCTGATAGATCACGTGGACAGTGGCTGCTGGTGGCCTTTGTCTTTGTGATGACCTATGGCGGTTTGTCTTTCAAATGCCGGACCAAAGAGAAAAGCAGAGACGTTCAAATAAATTAGCCACACAGGGAAATAAATAAGGAAAGAATCAGCTGACTGCTTCTGGTTGCACTCTGCTGACTGGTTGAGACCACATTTAAGTTTAGGGATAAGGACAAGGAAAAAGAGACCAAATCTCATCAAAAAAACAATGTGTTGTTGAGTAATTACTATATAAGagtgatttattttctttttattctgtcttttgatattttttatttaatctttttgaaaaaaacataaatctgttaaaaagaaaaaaaaaaaaaaaaaaaacaaaactagaCCAGACTAAATGTTTCCTACATGCCAGGGAGGAGAAAAGGTAGAagaaaggaagatgtgttggaATGACTGTGTTAGAAAAATTAAGATATTGCTATGCGaactttatttctgtatttttgcaTACATAACAGTTTTTCCCGAAACCAGCGTCACCAGTTTTCACTGCCACTGAATTGGCTGCCCGGTGCAGCAGTCGCTCCGCTTAAAGCAGTTTATTTCAGGTTTAGATCATGTTACTGGATTTATTGCCGAGTTTTACTGTAACATGGTCTGTTTGAAAGACACCACGTCGCTGCTCTGAGGAGTAACTGTAGGGTACTTCACTGAGAGGTGAATTTGTTTCACCTTAATCAACTCTCAGAATAAAACATGTTCCATCTTCTCTAAGGTGTTACTGTTTACACATGGTACAAAGTCATGCTGCCTTGCCACTAAATATAAAAATCACTTATTTGACAATCATTCAAGCCATGAATGTGGAGAAAACATGTCTTCCACTGGAGCATGTGATCAAACTGTAAATGGATCTGATACTCAGTAGGTTTGAACTTAATTGTGGTAATCGATCAGCCTATAGTTATTGTAGCTACAATATTTTCCTTTcaggcaatgttttttttgtaatagcAAACACATCTTTAACACGCTGACTCTCACCAGCTGGTCACAAGATGTGTGTCATCCTAAAATTACAGGGCTGTGTGCAAAATGATTTACATTTTTCACACCTCTTAAACGTGTAAATCAGTGTCAGAGGGATATTACACATTGTTAGAACATTGTATCAAATTACCTTTATGCCACTCTGGAAGCATAGTCATCACCCTGTCTGCTCCTTATGACCAAGATACAGTTACTGTGATTGAGTTTGTGTCTGAGGCCGCATTGGTCCATGTAAAGTCAAAAATTCACGCAAGCAGATTACAAGAATATTAAATTCCGAAATATTTAGGTGTGTACATTGTGTCCGTATTAATGTGTATGTGAGATATTGGAAATGGAGGTTGGAGAATATATGATATGGCCTCAGTATAACTGTGGGAATGTGTGTAGTGTGGGAAGGTGTGTAGATGGATAATTCTATTATGTACAAgagtatttaaaaatatttaacacaAATTGCCTTGGAACTATGGATCCAAACAAAGCCTTTGCCATGATGCCACGTCAGCTTTCTCATGCACGGTATCATTGGCTCACTTCCCTGCAAAATATcctatcaaaagtcaaagaGCCTTTTTCAAAACTAATAAAACCAGCATAGCTTCAGACGCAACACTAAAGAAAAGTGGGGCACTAAATCGAAATCACTGTTTGTAGGAAGCTCAGTTACTGCTGAACAAACTGAATGAACTTCAACTCGGGCTATTTGACAAAATGCTATTTAAAGTACAACTCTTATAATATGGGACGGATTCAGCAAATGTGGATTGAATGATAAATTCATGATATATTTATTCATGCATAAACTTCATATTCACTGATTCTTTGTAATCCTGTAGGTTTTAAATATCTTCATTATCTTATCCAAATGCCTTTATTTTAAGAGTACTGCTGTATTTTGGATGGCAACACcaatgtttttctgtgtttatgtTGTACAGTGTTTGTATGTGAGACAGAttaggatgatgatgatgatgtctgtaATGTTGATATTTTATGCCTTACAAAATGACCATGTTCTCCCAGAAGTGTTAGCAGTGATGCTGGAgtttatttttgctttgtttgggtTCAGGTGCAATTTACAGATCTGAATCATTGTTATTTGGACACTTTATTATTATGATGGTGTTGTTGTGCTAGCTAGATTGTAGAACGAACATACTGCCATGTACAGTTTTTTTGCATGCATAGCTTTGGTGTCAAGTCActgtaataaaacacacacacacacacacacacacacacacacacacacacacacacacttaactaTTTTAGGATTGTAGCTTTTTTCTGTGACTTTGGAACATTGGTTTTATTTGAAGTTGTTTGAGGTGAtttgtaattaaaaaatattggttTTAATCACTGAA

Function

symbol description
stum Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog).

NR:

description
PREDICTED: protein stum homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781074.1 True 3652 mRNA 0.38 4 16045919 16061907
XM_039781075.1 False 3289 mRNA 0.39 5 16045919 16061906

Neighbor

gene id symbol gene type direction distance location
epb41l2 epb41l2,LOC106936101,LOC103373577 coding downstream 65719 15921621 ~ 15980200 (-)
tmem244 tmem244 coding downstream 126279 15841146 ~ 15919640 (-)
fkbp6 fkbp6 coding downstream 206403 15831779 ~ 15839516 (-)
arhgap18 arhgap18 coding downstream 215133 15808083 ~ 15830786 (-)
sel1l sel1l coding downstream 239070 15795771 ~ 15806849 (-)
ehd3 LOC103369145,LOC104927375,LOC100697227,LOC101483142,LOC101071455,LOC105919213,LOC103457740 coding upstream 20117 16082024 ~ 16098722 (-)
il20ra NA coding upstream 40146 16102053 ~ 16108572 (-)
LOC120547308 NA coding upstream 127093 16189000 ~ 16195106 (-)
LOC120547182 trdn,LOC103371166 coding upstream 146352 16208259 ~ 16231901 (-)
hddc2 hddc2 coding upstream 313979 16375886 ~ 16379169 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding downstream 3704 16037750 ~ 16042215 (-)
G184699 LOC107390449 non-coding downstream 12189 16025218 ~ 16033730 (-)
G184696 NA non-coding downstream 30384 16012500 ~ 16015535 (-)
G184668 ctgf non-coding downstream 270433 15772686 ~ 15775486 (-)
G184662 stx7 non-coding downstream 310637 15734418 ~ 15735282 (-)
G184705 NA non-coding upstream 2764 16064671 ~ 16064914 (-)
G184707 NA non-coding upstream 38237 16100144 ~ 16100732 (-)
LOC120546331 NA non-coding upstream 63478 16125385 ~ 16145169 (-)
G184730 NA non-coding upstream 188290 16250197 ~ 16251869 (-)
G184731 NA non-coding upstream 229483 16291390 ~ 16356567 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 250281 15788826 ~ 15795638 (-)
rps29 NA other downstream 934440 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1378318 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1432973 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1547549 14472201 ~ 14498370 (-)
LOC120546224 NA other upstream 3947 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 84683 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 428743 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 763745 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 1204452 17266359 ~ 17269634 (-)

Expression


Co-expression Network