selenoi (selenoi)


Basic Information

Item Value
gene id selenoi
gene name selenoi
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12908967 ~ 12922556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781118.1
GGACGTTTGCGCTCCGTAGGAGTGGCCCAAATGTTTCGACATCACCTCACCCGGCGTGAACGACATCGGCCAAGCTAGATGGTACTTCGACTCGGCAGCTAACGTTGGGGTTCGCATTTCCAAAAGAAGACCTATCCATTTATCTCATTGTGGGTCCAGACTGTACCACCATGGCTCTTTACGAATATGTCACTCAGGAGCAGCTCGCAGGCTTCGACAAATACAAGTACAGCGCAGTGGACTCGAATCCCTTGTCTGTCTACGTCATGCATCCTTTCTGGAACTTTGTGGTGAAGTTTCTACCAACATGGTTGGCTCCAAACCTCATTACATTCACAGGCTTTATGTTCCTTGTGTTGAATTTCCTTATGTTGGCCTTTTACGACTTTGACTTCACTGCCTCTGCTGCAGGACACGAACACGTGCCTAGCTGGGTCTGGGTTGCCGCAGGGATCTTCAACTTCTTGGCCTATACACTCGATGGTGTTGATGGTAAGCAGGCTCGTCGCACCAACTCCTCCACGCCACTAGGGGAGCTGTTTGACCATGGCCTGGACAGTTGGGCCTGCATCTTCTTTGTGGCCACCGTCTACTCCATATTTGGACGTTTGGAAAGTGGCGTGGCCGTGCTCACACTGTATTACATCCTGTGGGTGGTGCTGTTCTCATTCATCCTGTCTCACTGGGAGAAATATAACACTGGCATCTTGTTTCTGCCATGGGGATACGACATCAGCCAAGTGACAATCTCCCTGGTTTACTTGGTGACTGCTGTGGTCGGCGTGGAGAAGTGGTACCAGCCCTGCTTGTGGCACTACCTCTATAGAGACCTTTTCAGCTTCATGATCATCGTCTGTTCCTTCACTGTGACCTTACCCATGAGCCTCTACAATGTCCTGAAAGGTTACCGCAGTAACACCCTGAAGCACAGCAGCATGTACGAAGCCTTCCTGCCCTTCCTTTCTCCCGTCCTGCTCTTCGTCCTGTCCACCACCTGGGTGGTCTTGTCTCCATCCAACATCCTCGAGCTGCAGCCCAGGATCTTCTACCTCATGGTGGGCACAGCCTTCGCTAATGTCACGTGTAAGCTGATCGTGTGTCAGATGAGTAACACACGTTGCCAGGCGCTGAGCTGGCTGTTGCTGCCCATGACGCCGGTGGTGTTGTTAGCGGTGACCGGGGTGGTCGCCAACGAGACCCTCCTGCTGTATCTGTGGACGGCTGTCGTCGTACTAGCACACATACACTATGGAGTTTCAGTGGTAAAACAGCTCAGCAACCACTTCAGCATCTTGGCCTTCTCCCTGAAGAAGCCCAACAGTGACTGACAGGAGCAAGAACGAATCGGCTTGAAGGCAGCGGAGGTTTAGGCTTCTCGGCTTATCGACACTTCACTCTCATCACCACGGAAACCGCATCCCCTCCCCTCCATCCATGAGGACTCTACGAGTGGAATGGACTGTTTCCACTGTCcgcagacacaacacacacacacacacacgcacgcacacattcacGCACACATTCCCAACCAATCAAACTCTGGTCTCTGCGATGGGGTGGGCCCAGGGGCTCTGGCTTCCGTCATTGGTGATTTGGCTAACTTTGCTGAGCCAATGAGGTGCAATTGTTTCCTACGGAAATGTGCTTCAGTCATGAGGACAggccatgcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatacttgtacATACTGCTTTCATGCAGATAATTTATAACTTGTGGCAGGTTATTTCAAGTacaaacacagccacacacaaacgcacacaaacagtTGCACTCACATAGTATTATGAATGTATAATATGCCTTGGGGAAACGCCATTTAAGTCTTATTATCTAATTATTATATTAACAGGAATGCTTCAAGTAGTGTTGTTTCAAACCTGACCAAACCTCTAAATTGTGGCTGCGCGTGGCTCCTACACATCCACAGCGGTGTCCAGAGTTTAACGGTTCAGTcacccatttctttttttccatgggATGATTTTCTGTTGGAAATCCCAGTGATATATGTcaatagctatatatatatatatatatatatatatataatatactgtatgtgttaagGGGTTTGGGGCATTTTATTTTCGACTGaaaagaaacttaaaaaaagaagaagataacTCCTGTAAAACATTGTATAAATT

Function

symbol description
selenoi Predicted to enable ethanolaminephosphotransferase activity. Predicted to be involved in phosphatidylethanolamine biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human SELENOI (selenoprotein I).

NR:

description
ethanolaminephosphotransferase 1

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K00993 EPT1; ethanolaminephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781118.1 True 2226 mRNA 0.48 10 12908967 12922556

Neighbor

gene id symbol gene type direction distance location
agbl5 agbl5 coding upstream 1662 12889261 ~ 12907305 (+)
ccdc85cb ccdc85c coding upstream 218167 12640656 ~ 12690800 (+)
LOC120546362 NA coding upstream 270442 12632013 ~ 12638525 (+)
LOC120546363 NA coding upstream 279113 12617707 ~ 12629854 (+)
LOC120546361 NA coding upstream 310243 12589905 ~ 12598724 (+)
tbx18 tbx18 coding downstream 133877 13056433 ~ 13066587 (+)
irak1bp1 NA coding downstream 217425 13139981 ~ 13141521 (+)
enpp5 enpp5 coding downstream 298550 13221106 ~ 13228478 (+)
clic5b clic5,LOC104958973,LOC107378135,LOC106964163,LOC103355727 coding downstream 307410 13229966 ~ 13249155 (+)
opn8a NA coding downstream 466259 13388815 ~ 13412812 (+)
G183933 NA non-coding upstream 161300 12746084 ~ 12747667 (+)
G183896 ccnk non-coding upstream 205725 12701168 ~ 12703242 (+)
G183891 NA non-coding upstream 268889 12639318 ~ 12640078 (+)
G183890 NA non-coding upstream 271431 12629289 ~ 12637536 (+)
G183868 NA non-coding upstream 403844 12504685 ~ 12505123 (+)
G184000 phip non-coding downstream 248366 13170922 ~ 13172244 (+)
G184071 NA non-coding downstream 492684 13415240 ~ 13415570 (+)
G184074 NA non-coding downstream 511429 13433985 ~ 13434206 (+)
G184075 NA non-coding downstream 511656 13434212 ~ 13434504 (+)
G184078 mut non-coding downstream 520487 13443043 ~ 13449099 (+)
bcl11bb LOC103368061 other upstream 169583 12707218 ~ 12739384 (+)
ches1 foxn3 other upstream 1039775 11764143 ~ 11869192 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 2242495 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 2509155 10236949 ~ 10399812 (+)
LOC120546402 NA other upstream 2796332 10111070 ~ 10112635 (+)
LOC120546167 NA other downstream 24443 12946999 ~ 13008411 (+)
G183994 phip other downstream 222919 13145475 ~ 13247416 (+)
LOC120546706 wdcp other downstream 545679 13468235 ~ 13474159 (+)
LOC120546742 plcb1 other downstream 1101928 14024484 ~ 14140769 (+)
G184231 NA other downstream 1439785 14362341 ~ 14381187 (+)

Expression


Co-expression Network