fdft1 (fdft1)


Basic Information

Item Value
gene id fdft1
gene name fdft1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18966206 ~ 18977451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781176.1
TTtagcagcagacacatttattttaacagatTATAAAACGTGGCCTACAGCTTTTAGAGTGGGAGGAGCGGAGTAATCATAATAACAACAGATCTACAAACGCTGTGCACAGACCCTGCTCCCATACACAGTGAAGGGTTAGACTGTTCTAAATCCAGTCCAGTGGAGGGCTTGATTTAGCTCTCCCAGGCGTCCACCTAAACGTTTTTCACCGTATTCGACCCCTCAACTCGCGTGTCCTCTACATGTTTCAAATTTTCCCCACCAGCCGTGGCGTCGACATGGACAGAGTCGTTTTGTAGAGTCTCGGTCGTTGTTTGTATGGCCGGAGTATGCTGCAAGTGTCCAGTCTCTCTGTCCGTGTTCAAGCGCTCTCTCTCGGTAACGCCGCGGGGCTGCGGGACCGCTCCTCGGTCCCTCCTACCGAGCTGGAGGCTGGGGGAGCGGGGCCTGCAGGAGGCTGCCCGTCCCTCCAGCGTCCTTAGACCCGCAGGCTTTTACCGACACACGACGTTCTTCTGTCTCTTTTGCCAGGAGTCCATGAGTTTGAGTCTGCGGACCTGCTATCTGTACCTGAACCAAACCAGCCGGAGTTTTGCAGCTGTGATACAAGCGCTGGACGGGGAGTTAAGGCATGCAGTTTGTATTTTCTACCTGGTGCTGCGAGCGCTGGACACCGTCGAGGACGACATGACTATCCCTCTGGACAAGAAGGTTCCCATGCTGAATGATTTCCACACCTACCTGTACCAGGATGGGTGGTGCTTCACCGAGAGCCAGGAGAAAGACCGACAGGTTCTGTCGGATTTCCCCACGATATCACTGGAATTCAGAAACCTTGCTCAGCAATACAGAGATGTCATCTCAGACATCTGCCACCGTATGGGAGCCGGAATGGCCGACTTCTTGGAAAAGAAAGTGGGATCCATGAAGGAGTGGGACCTGTATTGTCACTACGTGGCCGGTCTGGTCGGTATCGGTCTGTCTCAGCTGTTCTCTGCATCCCAGCTGGAGGACCCCGAGGTGGGGCGCGACACTGAGCTGGCCAACTCCATGGGCCTGTTCCTCCAGAAGACTAACATCATCCGAGACTATCTAGAGGACACACAAGAGGGACGTGTCTTCTGGCCACAAGAGGCTTGGAGTCAGTTTGCAGGTCGTCTGGAGGACTTGGCCCAGCCAGAGAAGCTGGAGTCGGCTCTCTCCTGTCTCAACCTGCTGGTCACTGATGCTCTGCGACACGTCCCGGATGTTATTGCCTACCTGTCCCGCCTGCGCAACCAGAGCGTCTTCAATTTCTGTGCCATTCCACAGGTGATGGCAATAGCTACGCTGTCGACATGCTACAACAACCCCATGGTGTTCCAGAAAGTGGTGAAGATCAGAAAGGGACAGGCAGTCACACTCATGATGGAAGCCACCAACATGAGTGCTGTGCAGACCATCATCGCCCAGTACAGCCAGGAGATTTTACAGAAGGTCTCCCACACGGACCCGTCGCGGGACAAGACCCTGCACATCCTGGCTCTAATCCGAGAGAAGTCCACCCTTTCACAGTCTAGCCTCGCCTCCAGGACCCACCACCTGTCGCCCATGTACCTGTCTGCTGCCATGCTGCTCGCCGCTCTCAGCTGGCAGTACCTAAGCACCACTGCAGCACAGGCACAGGGCACCGGTGACATGCAGGGACCGTGAACCCATATCACCTCCATCTTACCCGGGGCCCACAGACTCAGAAAGCCCCTATGCCCACTCTGGAGGTCTGCTGGAATCTAAAACACTTCCTCCCACTTTGCCCTGTTTATTATGGCCATCACAGGACCATGGATATATTTAGACCATGGAGGGGGTATAGCAGGCTGGTCTGTGTTTGATTGGGATTTCTAGTAGTCCATCCTGCATCTGGATAAATAATTTACACACAGTGTTGTGTGGTTATACTCACCAGCATAAATGGCACATTAAAACCATTTAGGGCGTTTTGTCTGATGTTAATTTTGGTTgtgtgttctttctttcttttttttttggtaacatGTTGGCCCTTTTGAATTGCGTGAACTTATTCAGCATATTTGAACATTTCAAGATAGAAAATGTATTCCCCAAAAGTGATGAAATGCAGAGTACATGATACTACCCATTTTAGGATTTTGGGGAACACAGTCCCCAAACTCCATTAAATTTTTGTGTCAAATCTTAGTCTTCATATTTTCCATGTCAAATTTAAAGCTATCTTCATATTCCACTTGATTTGTTTCTACACTGGAAACACTCCTTTTCACACAAATGAAAGTACTGTTCCAGTGCACTTTATAGTAAATGTGCTGTATGTTAGCATAGGTGATATGGACAGCATCCACTCACCGTAGAGCTTTATTTCAACACTTTTATGTCGATGTTCTTTCTGTTTCATCTCtataggagaaaatgaaaagaacagcATTTCCAAGGTAGTTTGGACATGGACTGTTTGAATGAATAAGGGAGAACAAATGTAATTTCCGGTACATTTGATATCTGAAAATGAAATGCATATGGAGACCGCTAGCTTAAGTGCCCTTAACACAGCTTTGGTGAGTAGGAAGGCTATAGCACAGAGTAACCTTGTACAGAACCAAAGGAGAGCTACAAACATTGCTATGTAATGTGACATTTTGATTTGTACATATTGAACAAATAAAGATGAGTAAGAATCTAAA
>XM_039781177.1
ACTGAAAGCCGCATTCTCTTCCCGGTGCTGCTGCAGCTGTATCTCGCTTTGATGGGGAACATCTCTCCAGGTTTACACATCAATTCGTCGAGTTACAGCTGAACATCTAAAGCAACATGGACATTCTTAAGTCACTGGGCCACCCAGAAGAGATATTCAACCTATTTAAGTTTAAAATGGGGGGATGCAAAACCGTCATGCCAAAATTGGATTATGAGTCCATGAGTTTGAGTCTGCGGACCTGCTATCTGTACCTGAACCAAACCAGCCGGAGTTTTGCAGCTGTGATACAAGCGCTGGACGGGGAGTTAAGGCATGCAGTTTGTATTTTCTACCTGGTGCTGCGAGCGCTGGACACCGTCGAGGACGACATGACTATCCCTCTGGACAAGAAGGTTCCCATGCTGAATGATTTCCACACCTACCTGTACCAGGATGGGTGGTGCTTCACCGAGAGCCAGGAGAAAGACCGACAGGTTCTGTCGGATTTCCCCACGATATCACTGGAATTCAGAAACCTTGCTCAGCAATACAGAGATGTCATCTCAGACATCTGCCACCGTATGGGAGCCGGAATGGCCGACTTCTTGGAAAAGAAAGTGGGATCCATGAAGGAGTGGGACCTGTATTGTCACTACGTGGCCGGTCTGGTCGGTATCGGTCTGTCTCAGCTGTTCTCTGCATCCCAGCTGGAGGACCCCGAGGTGGGGCGCGACACTGAGCTGGCCAACTCCATGGGCCTGTTCCTCCAGAAGACTAACATCATCCGAGACTATCTAGAGGACACACAAGAGGGACGTGTCTTCTGGCCACAAGAGGCTTGGAGTCAGTTTGCAGGTCGTCTGGAGGACTTGGCCCAGCCAGAGAAGCTGGAGTCGGCTCTCTCCTGTCTCAACCTGCTGGTCACTGATGCTCTGCGACACGTCCCGGATGTTATTGCCTACCTGTCCCGCCTGCGCAACCAGAGCGTCTTCAATTTCTGTGCCATTCCACAGGTGATGGCAATAGCTACGCTGTCGACATGCTACAACAACCCCATGGTGTTCCAGAAAGTGGTGAAGATCAGAAAGGGACAGGCAGTCACACTCATGATGGAAGCCACCAACATGAGTGCTGTGCAGACCATCATCGCCCAGTACAGCCAGGAGATTTTACAGAAGGTCTCCCACACGGACCCGTCGCGGGACAAGACCCTGCACATCCTGGCTCTAATCCGAGAGAAGTCCACCCTTTCACAGTCTAGCCTCGCCTCCAGGACCCACCACCTGTCGCCCATGTACCTGTCTGCTGCCATGCTGCTCGCCGCTCTCAGCTGGCAGTACCTAAGCACCACTGCAGCACAGGCACAGGGCACCGGTGACATGCAGGGACCGTGAACCCATATCACCTCCATCTTACCCGGGGCCCACAGACTCAGAAAGCCCCTATGCCCACTCTGGAGGTCTGCTGGAATCTAAAACACTTCCTCCCACTTTGCCCTGTTTATTATGGCCATCACAGGACCATGGATATATTTAGACCATGGAGGGGGTATAGCAGGCTGGTCTGTGTTTGATTGGGATTTCTAGTAGTCCATCCTGCATCTGGATAAATAATTTACACACAGTGTTGTGTGGTTATACTCACCAGCATAAATGGCACATTAAAACCATTTAGGGCGTTTTGTCTGATGTTAATTTTGGTTgtgtgttctttctttcttttttttttggtaacatGTTGGCCCTTTTGAATTGCGTGAACTTATTCAGCATATTTGAACATTTCAAGATAGAAAATGTATTCCCCAAAAGTGATGAAATGCAGAGTACATGATACTACCCATTTTAGGATTTTGGGGAACACAGTCCCCAAACTCCATTAAATTTTTGTGTCAAATCTTAGTCTTCATATTTTCCATGTCAAATTTAAAGCTATCTTCATATTCCACTTGATTTGTTTCTACACTGGAAACACTCCTTTTCACACAAATGAAAGTACTGTTCCAGTGCACTTTATAGTAAATGTGCTGTATGTTAGCATAGGTGATATGGACAGCATCCACTCACCGTAGAGCTTTATTTCAACACTTTTATGTCGATGTTCTTTCTGTTTCATCTCtataggagaaaatgaaaagaacagcATTTCCAAGGTAGTTTGGACATGGACTGTTTGAATGAATAAGGGAGAACAAATGTAATTTCCGGTACATTTGATATCTGAAAATGAAATGCATATGGAGACCGCTAGCTTAAGTGCCCTTAACACAGCTTTGGTGAGTAGGAAGGCTATAGCACAGAGTAACCTTGTACAGAACCAAAGGAGAGCTACAAACATTGCTATGTAATGTGACATTTTGATTTGTACATATTGAACAAATAAAGATGAGTAAGAATCTAAA

Function

symbol description
fdft1 Predicted to enable farnesyl-diphosphate farnesyltransferase activity and squalene synthase activity. Predicted to be involved in cholesterol biosynthetic process and farnesyl diphosphate metabolic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human FDFT1 (farnesyl-diphosphate farnesyltransferase 1).

NR:

description
squalene synthase isoform X1

GO:

id name namespace
GO:0008610 lipid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004310 farnesyl-diphosphate farnesyltransferase activity molecular_function

KEGG:

id description
K00801 FDFT1; farnesyl-diphosphate farnesyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781176.1 True 2702 mRNA 0.49 7 18968924 18977451
XM_039781177.1 False 2383 mRNA 0.47 8 18966206 18977451

Neighbor

gene id symbol gene type direction distance location
gata4 gata4,LOC102782453 coding upstream 7404 18948320 ~ 18958802 (+)
trnae-cuc_27 NA coding upstream 33819 18932316 ~ 18932387 (+)
LOC120546190 l3hypdh coding upstream 147763 18814609 ~ 18818443 (+)
LOC120546186 kcnh5,LOC103364987 coding upstream 152492 18798257 ~ 18813714 (+)
LOC120546187 acss1,LOC100712210,LOC102211118,LOC102308435,LOC101486165,LOC103364973 coding upstream 187104 18761417 ~ 18779102 (+)
ctsbb ctsb,LOC104947341 coding downstream 379 18977830 ~ 18981178 (+)
LOC120546316 LOC104947340,LOC103364984,LOC107377588,LOC106510778 coding downstream 4726 18982177 ~ 18989774 (+)
prkg3 LOC104947339,LOC103364985,LOC100708987,LOC101479945 coding downstream 13495 18990946 ~ 19003030 (+)
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding downstream 93218 19070669 ~ 19076482 (+)
moxd1l NA coding downstream 119608 19097059 ~ 19102420 (+)
G185495 daam1,LOC108240128 non-coding upstream 145060 18819084 ~ 18821146 (+)
G185471 NA non-coding upstream 260972 18703965 ~ 18705234 (+)
LOC120546607 NA non-coding upstream 276173 18666640 ~ 18690033 (+)
G185415 LOC106525279 non-coding upstream 321052 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 325825 18636374 ~ 18640381 (+)
G185589 NA non-coding downstream 37275 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 45245 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 46813 19024264 ~ 19024578 (+)
G185592 kcnk2 non-coding downstream 65773 19043224 ~ 19043548 (+)
G185593 NA non-coding downstream 67963 19045414 ~ 19046107 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 254212 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 331154 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 825946 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 911280 18020956 ~ 18054926 (+)
G185237 NA other upstream 1048958 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 226703 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 377165 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 390269 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 452144 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 595122 19572573 ~ 19620783 (+)

Expression


Co-expression Network