LOC120546417


Basic Information

Item Value
gene id LOC120546417
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19699722 ~ 19703391 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781342.1
tttggaAACTGTTTAATGAAACACAGGTTGAATATGGCAGCAAGACCTTTACAAGTTAATTCAGGATCAAATGGAGGGAACCTATTCACTCACGTTGGTGGCGGACCAACAGCTGAGCAGCAAGATCCAGGACTGTACGGCACCAGCCAAGACCCAGGACCTTCATTCCATCCCCAACACTACATCTCTGCCCGGCCTGTCTTACATGCTCTACCTCCACCCCATTTCCTCCAGTGCCAGTGGCCCATGCCCTTCTCCTATTCCCCTTTTGGTGGCTTCCCAGGCATGGGCTATGGTATGGTCATGCCCTcattccctcctcctccctatATGCAGGCTCCAGCCTACATCCTGCCCCACCCTCACATTCAACCAGTCGACTACAGACGGTTGCTCCACCCCCAAGTCCATGTTCCCAACGCACCCTACCGGAACCAAAACCAGACCTGCAGAATTCACCCGCCTCATGCTGGCCGTGTTCGAGAAACCGTGAACTCTGAGGTCCAAACAGAACCCACACAGATAGACGGTGGTTACGGTGAGGAAAGCCCACCTGTCAGCTCAGATTCTGCCTGTGGATCAGCCTCAAACTCTCCATCATCCTCAAGTTCCAGCTCCCAAAAACGAGGTTCTGCCGAGGTTGAAAACTATACCTTACCCAGCAGTAATGCAAAAGACACCATGGTTAAAAGGTCCAGCACAAGTAGCACAGTCAAACACCGCTTTAAAGTCCTGCACCCTACAGAAACGAAGACTGTCCAGTCAGATGTGAGAGCAACTCTAGAAACACAGAAGAGCCGGAAAGACTTTGTTGTTCAGAAGAATATTTCCCCTTGCAGAAACAATGACTTCCATTTTTGGTCAGTGAGTTCTCCAGATGGCATTGTTCCTGTGTGTAGCTCTTCTCAACAAGAGGAGGAGGTTGTCAAAGAGAGACGTGTCTCTGTTCCTGACATTCTGAGGAGTTGGGGAGGTGGCACGCCGCAGGCAAcaatgctgaaaatggcagacAAGTTGCTTGAGACTGACCACCAACTGCCATCTTATGAAACTGAAGTAGAGGATAAGTCAGTTTACCAGAGTCAAACTGAGACCAGAAATGATCCAGTGGTGGCTGACTGTGCTTTTGCTCACGATGATGCTGAGGGTAACTTAAGGTATAAGGACAGTGCAACCCTTTTCAAGATCCTTAAACTGAGAAAAGGTCATGAAGAGCGAAAGGCAGAATCCAGAAGAGAAAATGAGCCTGTGGGATTGGTTGGCTCTGTAAGGCACTTACCCTACAGAGATGAACTgctacattcatttaacaaATCCCAAAAGCTCCCTGACAATGAGCAAGAAGAGGGCAACGagacaaatccacatgaagacACTACAGAGATCATTCCCtatcaaatgtttttaaaaggctGTCAGATGAAGACAAAAATGAATGAGTCTGTTTGGTCTGTGGAGTCTCTGCCCCTTTTTATCCCCACTAAGGAGTGGCTGCTGAACAGCATGTTTGAGCCTGAAATAACTGACCCCGTTCCAGTGTCTGACAGCTGGCTCGTTTTCAGTACCCCAGCTGAGAAGTTAAGTCCACCAAAGGAGGAGAGTGAAATTGATGCCTCAGAAATGAGGAGAACAAAGAGAGGCCAGAGCAAGACTCCTTCAGAAAATGATCACTTCGCTTCCCCAACTCTGCAGAATAAACTAAATTTAACTACCCTCACTGAAGAGGACATGGACACAAATAGGTCTTCTGAACCAGAGGCTAATCAAAGCCCAAACCAGGAATTGCTTGTTGTAAATGAACAGGAGAAAGGCCCCTGCTCCTCTGTGCAGGAAGAAACCCTTTTCTTGAAATCTGCAGCAGGGGAGAAAATCTCAACAGGCCAGCTAATTCGCCAAAACGGAGTGGACACAGAGGTGGGGGATGGAGCATGTGGGAAAGAAGTCAGTCTGAGAAACAAGCAACTGTGTGTCCCCAAGGCTGACGAGAAGATGACTGAAGTGTCTCCATCGAAGGGATGTTTAGTGGAATGTGGCATCCAGTGTACTGAAATGAAGTGTGCATGTAAAGAGATGAGCAGCATGGGACCAAGAAGGCATCCTTTCAAATATTCAGATATGAAGAAGGCAAACAATGGCCAGGCTGAAGGATTCAGCATAATGGAATATGGGCTGAAAAACCAGAAGAGGAATGGTAACCGGAGGAACCGGGGTCAAGGTGGAAATGGAAGGAACCCACCGCACTGAGCACCACTGACTACACTCTACAAGACAAcacttggtttaaaaaaaatctattttaaatgttgaaatgtaatttctattattaataaatgtttttgtatcaATA

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781342.1 True 2347 mRNA 0.47 5 19699722 19703391

Neighbor

gene id symbol gene type direction distance location
si:ch211-225h24.2 tdrp coding upstream 101615 19584702 ~ 19598107 (+)
lin9 lin9 coding upstream 287024 19403856 ~ 19412698 (+)
parp1 parp1,LOC102777090 coding upstream 296523 19391005 ~ 19403199 (+)
LOC120546239 NA coding upstream 366106 19328007 ~ 19333616 (+)
smyd2b smyd2,LOC103360985 coding upstream 430324 19260262 ~ 19269398 (+)
si:dkey-119f1.1 smc6 coding downstream 9273 19712664 ~ 19731224 (+)
fig4a fig4,LOC102794534 coding downstream 41786 19745177 ~ 19830843 (+)
LOC120546286 gpr6,LOC104945012 coding downstream 131094 19834485 ~ 19837398 (+)
cdc40 cdc40,LOC103135076 coding downstream 216082 19919473 ~ 19944031 (+)
slc22a16 slc22a16 coding downstream 274473 19977864 ~ 19992886 (+)
G185716 tmem18 non-coding upstream 6666 19692136 ~ 19693056 (+)
G185711 NA non-coding upstream 47147 19652237 ~ 19652575 (+)
G185696 NA non-coding upstream 145487 19553274 ~ 19554235 (+)
G185656 NA non-coding upstream 420365 19278107 ~ 19279357 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 615938 19082696 ~ 19083784 (+)
G185793 NA non-coding downstream 4940 19708331 ~ 19708930 (+)
G185794 NA non-coding downstream 5823 19709214 ~ 19709512 (+)
G185795 NA non-coding downstream 8136 19711527 ~ 19711832 (+)
G185799 NA non-coding downstream 32127 19735518 ~ 19735724 (+)
G185800 ak9 non-coding downstream 32449 19735840 ~ 19736056 (+)
acp1 acp1 other upstream 51566 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 78939 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 157890 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 272233 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other upstream 310499 19367720 ~ 19389223 (+)
kif25 LOC104961976,LOC100703631 other downstream 149252 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1467557 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2241352 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2282388 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 2577576 22280967 ~ 22301585 (+)

Expression


Co-expression Network