LOC120546590


Basic Information

Item Value
gene id LOC120546590
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26831828 ~ 26842554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781618.1
ATGGCGATGAATGTTTACTCCACCTCAATGGCCACAGAGAACCTGAGTCGTCATGACATGCTGGCATGGGTCAACAACTCTCTGCAGCTCGCATACACAAAGATCGAGCAGCTCTGTTCGGGTGGTGCTTACTGTCAGTTAATGGACATGCTGTTTCCAGGGTGCATATTAATGAAGAAAGTGAAGTTCAATGCTAAACTGGAGCATGAATACATCCACAATTTCAAGGTCTTACAGGCTTCATTTGAAAGAATGAATGTGGACAAgaTCATTCCTGTGGAGAGGCTGGTGAAGGGCAAGTTCCAGGACAACTTTGAGTTCCTTCAGTGGTTTAAGAAGTTTTTTGATGCCAACTATGACGGGAAAGATTACCACCGTGTAATGTCACGGCAGGGCCATGAGGGAACGCTGCCTCCACCCAACCcagGCCACATGAGAACATCTCCCACAGCACCAAAGAGTGTTCCTCCCCCCCAGAGGCAGACCAACACAGCACCAGCCCGCAGGACAACTCCTGTGAGCCGCAATGGAGGAGACGCTGAGCTTCTAGAGCTCAACCAGCAGCTGCTGGATCTGAATCTGACTGTACACGCactggagagggagagggactTTTACATTGGAAAGCTGACAAACATTGACCTTCTCTGCCAGGAAAGCGAAAATGACAGACATGCAATCAGCAAAATCATGGATGAAGTCCTGTCATGGAAGCGTGGTATTTATAGACCTTGCCAAGTACTACTGTAGAAGACTGAAGAGAAGGATAACAAGAAGAAAAAGCTTTCTGTTTCTTTGCTGCTGATGATACAGAATGCTTGATTTTCATCAGTAAAGTTGAATGCAGTGCCTTCTCATACACTGGAGAGATCACTTGGAGCTTTCTGAGTGAAAACAGGAGCTGCTAAAAAacaccaggggcctcatttgtCAAAACGTAATAGATTTCCCATGAGCATAAAAAAGatttaattcaattaaaatgaGCATGAACAAGCTCATTTACATAAAGAAAAAGTGACGTATCCTCAATAACAGCTCCACGAAGCGTTTGAGTGTCTTTCCGCTTATTGTTTTGCTTTCACAGCCCACAGCTTTACTGTTTCGGTTCACCGTCGTTGTTCTGTTTCCTTAACTCACCGTACGTACACCGAGCCCTTCCACACGGTAACTGTTGGatggttttgttgttttgaagGCACTGTGACTGGTTGTGTGTTTGTAGATTCTTGTTGTGTTGGACAGTGAACCTGTTGAATCTGTAAGTGGCTGCTTGTTTCTTACCACATGTTAACagcaaaataaaattaataataaaaatatcaaCTTGA
>XM_039781619.1
CGCGAAACCGCGAACGGCAACGGCTAGAGCGAGCTTCTGCCATTGAAGTCTATGATAGTTTATGTACCGTGTCTTGTTGTACCTTTCCCTTttccaatttttcttttttaatgaaaGTGAATGGGGAAGAACACTTCCGGAACCAGAGCCGTtaaaaaagtgggcggtcaACAGTAGCCCATCATCAGATACAACGACAGCTGTGTGACCAAGGCCTCGCACTTCAGATGGCGATGAATGTTTACTCCACCTCAATGGCCACAGAGAACCTGAGTCGTCATGACATGCTGGCATGGGTCAACAACTCTCTGCAGCTCGCATACACAAAGATCGAGCAGCTCTGTTCGGGTGGTGCTTACTGTCAGTTAATGGACATGCTGTTTCCAGGGTGCATATTAATGAAGAAAGTGAAGTTCAATGCTAAACTGGAGCATGAATACATCCACAATTTCAAGGTCTTACAGGCTTCATTTGAAAGAATGAATGTGGACAAgaTCATTCCTGTGGAGAGGCTGGTGAAGGGCAAGTTCCAGGACAACTTTGAGTTCCTTCAGTGGTTTAAGAAGTTTTTTGATGCCAACTATGACGGGAAAGATTACCACCGTGTAATGTCACGGCAGGGCCATGAGGGAACGCTGCCTCCACCCAACCcagGCCACATGAGAACATCTCCCACAGCACCAAAGAGTGTTCCTCCCCCCCAGAGGCAGACCAACACAGCACCAGCCCGCAGGACAACTCCTGTGAGCCGCAATGGAGGAGACGCTGAGCTTCTAGAGCTCAACCAGCAGCTGCTGGATCTGAATCTGACTGTACACGCactggagagggagagggactTTTACATTGGAAAGCTGACAAACATTGACCTTCTCTGCCAGGAAAGCGAAAATGACAGACATGCAATCAGCAAAATCATGGATGAAGTCCTGTCATGGAAGCGTGGTATTTATAGACCTTGCCAAGTACTACTGTAG

Function

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0098687 chromosomal region cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781618.1 True 1331 mRNA 0.44 5 26833707 26842554
XM_039781619.1 False 977 mRNA 0.48 6 26831828 26841973

Neighbor

gene id symbol gene type direction distance location
LOC120546588 dpysl5 coding upstream 832 26796434 ~ 26830996 (+)
LOC120546585 dnmt3a,LOC103381119,LOC103355283,LOC106945224,LOC101063003 coding upstream 39024 26733362 ~ 26792804 (+)
LOC120547317 kif3c coding upstream 149112 26660751 ~ 26682716 (+)
LOC120547357 NA coding upstream 174325 26657341 ~ 26657503 (+)
rab10 rab10,LOC102798439 coding upstream 179698 26633495 ~ 26652130 (+)
LOC120546589 mapre3 coding downstream 1218 26843772 ~ 26856893 (+)
tmem214 tmem214 coding downstream 17516 26860070 ~ 26878578 (+)
esco2 NA coding downstream 53826 26896380 ~ 26905243 (+)
trnat-cgu_2 NA coding downstream 139167 26981721 ~ 26981793 (+)
LOC120547023 LOC103357708,LOC100700775,LOC101482519,LOC105938917,LOC107377760 coding downstream 230416 27072970 ~ 27407359 (+)
G187536 NA non-coding upstream 507094 26324516 ~ 26324734 (+)
G187535 NA non-coding upstream 516174 26315122 ~ 26315654 (+)
G187508 NA non-coding upstream 559233 26272368 ~ 26272595 (+)
LOC120547280 NA non-coding upstream 582143 26247778 ~ 26249685 (+)
G187431 NA non-coding upstream 864528 25967006 ~ 25967300 (+)
LOC120546372 LOC103909865 non-coding downstream 36892 26879446 ~ 26885536 (+)
trnay-gua_55 NA non-coding downstream 36979 26879533 ~ 26879621 (+)
trnaa-agc_21 NA non-coding downstream 37607 26880161 ~ 26880233 (+)
trnaa-agc_22 NA non-coding downstream 44580 26887134 ~ 26887206 (+)
G187672 NA non-coding downstream 45153 26887707 ~ 26888304 (+)
LOC120546586 dtnb other upstream 94025 26695430 ~ 26737803 (+)
G187574 NA other upstream 146321 26682895 ~ 26685507 (+)
tfap2b tfap2b other upstream 379463 26438486 ~ 26452365 (+)
tfap2d tfap2d other upstream 400431 26413691 ~ 26431397 (+)
gareml garem2 other upstream 548820 26265189 ~ 26283008 (+)
LOC120546215 LOC104930085 other downstream 185551 27028105 ~ 27038228 (+)
afdna afdn,LOC102779179 other downstream 1696846 28539400 ~ 28649123 (+)
ttll2 ttll2 other downstream 2030132 28872686 ~ 28883121 (+)
G188063 NA other downstream 2043936 28886490 ~ 28891364 (+)
trim54 trim54,LOC103375614 other downstream 2268404 29110958 ~ 29132700 (+)

Expression


Co-expression Network