batf (batf)


Basic Information

Item Value
gene id batf
gene name batf
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18414012 ~ 18419160 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781884.1
TGGTTAGTGGGCAGCAACACAGCCTATCAAAGAGACTGTCTTTGTTGGCTATTTTCACAGCTTTTCAGAAGTGTTTCCCATGCACACATGGACTGCAGGCATGACTATCCTTCCAGTGGACGCTTTTGAGAATTGCAAAATTATCACTCGTCTAAGTCCTTTGTTTTAGCAAATCTCATCTCAAACTGTGAATGATTGGGGAGCTGTCAGGAACAGAGTGTGTGTTAagttggtagcctactgtacattTCTCTGCATGTGAGTCTTGTTTCACATGTGCCGCTTTCTTGCACATTGGTGCTCTAGCACTGTGGATATAAAATGGTTTTGTTAAAGATGAAACAAGTTGGGAGCCTAACTTTAAGTGGATAAAGCAATCTGGCACTATCAGTTGTTTTGGGGCTTTTCAGCAATACTTTAATGGACAATCAGAAGACGTTAGATAATTAATTTGTTATCTCTTTGATGTACAACTGACTCAGCATTTTGAAATGGATTAGTTATTACGATACCAAGAAAATTGAGTGTTCAGGACATGAAACAGGGTGTGCGTTAAACCTAACCGATGACTCAGCCACTCCCCGACCCTGCCCTTCACATGAAGTGTAAAGTTAAGCCCATCTTCTGTCAAACTGTCATTAAAACGAACACCGCTTCCATTTCACACATAAACCCACCAGCAAGAGCCAACAGCATAAACTACGACAGTCTgatcttcaacttttttcagAGCTCCTCAGATGATGCAAAGAAGGTGATGCGGAGAGAGAAGAACCGGATCGCTGCTCAGAAGAGCAGGATGAGGCAAACTCAgaaagctgacaacctgcacTTGGAGAGTGAGAACCTGGAGAAGGAGAACGCTGCCCTGAGGAAGGAGGTGAAgcagctgacagaggaggccAAGTATCTGTCCTCTGTGCTGAGCAGCCACGAACCTCTGTGCACCGGCCTGGCTACTCAGACCCCCGAGCTCATCTACCCTCCTCATCACAGCAGCTACCACCACCAGCACATCACTGTACCACACTACCAGCACTGACCTGACTGACTACCGAGGCAGCCGAGGACGTGCTGCAAACAGATGACTGACCTCAATGGAGAGAAAGACTGACCGGAGATGTGTCTATAAATGTTAATAATTGTTCGAAACATGAACAATAACATGACAGGCCAATATGTCTGCCAAACAATGACAGTACGGACCCCAAGCTGTAACAAGCGGTGTTGAAAACTATTTATTTTGCTTGTGCTCATCTGTTTGCTTTTACCTGATTGACATCAGTGATCTGTATGTGGACTTAAACGGCTCAATGAGTAGAATTATCAACCAGTCTATGTTTACAGCGggataagaaaaaaacatcctACTGTATGTTCAGGTGACTCAGGTGATACagtatttttgtaaatttttagTGTCATAGAGCACCTTCGTCATTCTGTCATGTTTTGAGTTTCTCGTGATTATaactgtgtttcagtgtgtaaaTGTCGATCGATAATGCTCAGGAGATTTTGACAGATTTGATTGTGGACAAAGAGAATGTATAAAGTCGAGATCCTAAAAAAAAGGCTTCAATGTACCAAAAAAGAAACGTCTGGCAGTGAAGAATGGGCTTTCAAAGGGTCTTGACTTGTGTATTAGTGATGATGCTGATGTGGGAGAAGACCCAGCAAACGatatttattaaatatgttGCCTTTTAGGTACTCATTTCTGA
>XM_039781885.1
aagagaaggaggagtgacagaaagggaaagaaaagagggaagaaagactCATTAAGCCAATATCTTCTCAGCACCCGTTCTGCTACatagactctctctctctttctttcttttctctctctctctctctcactcacacacacacacacacacatactaaaaaCACAAAGCAGAAGTGGACAAAGACATACGGTTTCCGTCGCCGCAGTTGGCTATGGCTCAGGGCTCTGACAGCAATGACACAAGTTACAAGTCCCCATCACCTGGAAGCAGGCCGAGCTCCTCAGATGATGCAAAGAAGGTGATGCGGAGAGAGAAGAACCGGATCGCTGCTCAGAAGAGCAGGATGAGGCAAACTCAgaaagctgacaacctgcacTTGGAGAGTGAGAACCTGGAGAAGGAGAACGCTGCCCTGAGGAAGGAGGTGAAgcagctgacagaggaggccAAGTATCTGTCCTCTGTGCTGAGCAGCCACGAACCTCTGTGCACCGGCCTGGCTACTCAGACCCCCGAGCTCATCTACCCTCCTCATCACAGCAGCTACCACCACCAGCACATCACTGTACCACACTACCAGCACTGACCTGACTGACTACCGAGGCAGCCGAGGACGTGCTGCAAACAGATGACTGACCTCAATGGAGAGAAAGACTGACCGGAGATGTGTCTATAAATGTTAATAATTGTTCGAAACATGAACAATAACATGACAGGCCAATATGTCTGCCAAACAATGACAGTACGGACCCCAAGCTGTAACAAGCGGTGTTGAAAACTATTTATTTTGCTTGTGCTCATCTGTTTGCTTTTACCTGATTGACATCAGTGATCTGTATGTGGACTTAAACGGCTCAATGAGTAGAATTATCAACCAGTCTATGTTTACAGCGggataagaaaaaaacatcctACTGTATGTTCAGGTGACTCAGGTGATACagtatttttgtaaatttttagTGTCATAGAGCACCTTCGTCATTCTGTCATGTTTTGAGTTTCTCGTGATTATaactgtgtttcagtgtgtaaaTGTCGATCGATAATGCTCAGGAGATTTTGACAGATTTGATTGTGGACAAAGAGAATGTATAAAGTCGAGATCCTAAAAAAAAGGCTTCAATGTACCAAAAAAGAAACGTCTGGCAGTGAAGAATGGGCTTTCAAAGGGTCTTGACTTGTGTATTAGTGATGATGCTGATGTGGGAGAAGACCCAGCAAACGatatttattaaatatgttGCCTTTTAGGTACTCATTTCTGA

Function

symbol description
batf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including defense response to protozoan; immune system development; and regulation of gene expression. Predicted to act upstream of or within cell differentiation and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human BATF (basic leucine zipper ATF-like transcription factor).

NR:

description
basic leucine zipper transcriptional factor ATF-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09034 BATF; ATF-like basic leucine zipper transcriptional factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781884.1 True 1724 mRNA 0.43 3 18414437 18419160
XM_039781885.1 False 1271 mRNA 0.45 3 18414012 18419160

Neighbor

gene id symbol gene type direction distance location
zc3h14 zc3h14 coding upstream 4935 18402072 ~ 18409077 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding upstream 55099 18347236 ~ 18358913 (+)
chrna2b LOC104964447,LOC101470861 coding upstream 120177 18283900 ~ 18293835 (+)
si:ch211-142k18.1 LOC104964445 coding upstream 131310 18273829 ~ 18282702 (+)
nme6 nme6 coding upstream 215509 18194483 ~ 18198503 (+)
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding downstream 496 18419656 ~ 18442262 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding downstream 81831 18500991 ~ 18581123 (+)
LOC120547135 LOC104964429,LOC103372634 coding downstream 229141 18648301 ~ 18654514 (+)
fosab LOC104951064,LOC103372631,LOC100709203 coding downstream 276495 18695655 ~ 18698104 (+)
tmed10 tmed10 coding downstream 297863 18717023 ~ 18722986 (+)
G185374 NA non-coding upstream 16841 18396866 ~ 18397171 (+)
G185361 NA non-coding upstream 99533 18314228 ~ 18314479 (+)
G185360 NA non-coding upstream 105277 18308335 ~ 18308735 (+)
G185359 NA non-coding upstream 108435 18305254 ~ 18305577 (+)
G185357 NA non-coding upstream 111047 18302698 ~ 18302965 (+)
LOC120546827 NA non-coding downstream 24792 18443952 ~ 18464028 (+)
G185414 NA non-coding downstream 217214 18636374 ~ 18640381 (+)
G185415 LOC106525279 non-coding downstream 224259 18643419 ~ 18645154 (+)
LOC120546607 NA non-coding downstream 247480 18666640 ~ 18690033 (+)
G185471 NA non-coding downstream 284805 18703965 ~ 18705234 (+)
znf513a znf513,LOC102795572 other upstream 273752 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 359086 18020956 ~ 18054926 (+)
G185237 NA other upstream 496764 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 720378 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 727614 17669172 ~ 17686398 (+)
ylpm1 ylpm1 other downstream 179205 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 286696 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 784994 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 935456 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 948560 19367720 ~ 19389223 (+)

Expression


Co-expression Network