LOC120546740 (wtap)


Basic Information

Item Value
gene id LOC120546740
gene name wtap
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21680522 ~ 21686917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781903.1
TTTTTATATCCCCGTCTCTGGTTGTACTCTGCAGCAACGCAAGTGCAGCAGCTCGGTCAGATCCATTCTGTTCTGCCGTCAGCGATGAAGATGATGGTGAAGCGAATCAACAACGCATAAATTCACAGCTAATTTTAACGTAGTTGTAATTTTGCGTCTTGTTAAGAATCCGTGAAGCTGAGAGGTTCCACAAACGTCGAAAGATACGGGCCTGAGTTCACAATGACCAACGAAGAGCCTCTACCCAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAGTTGTGTACAAGGTGGAAACAGCATGAAGCATATGTCCAGGTCCTGGAGGCAAAATATACAGAGCTATGTTCCAATGATGTGCCGGGGTTGAAGGAGTCCGAGGAAAAGctcaagcagcagcagcaggagtcTGCACGCAGGGAGAACATTTTGGTCATGCGACTTGCCACCAAGGAGCAGGAAATGCAAGAGTGCACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAGCCGAGTGCGGCCCAACTGCGGTCATCCATGGTGGACCCAGCCATCAACTTGTTTTTCCTCAAAATGAAGGCTGAACTAGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCTGATAGCCAAACAGGGAAGAAACTGATGGCCAAGTGTCGAATGCTGATTCAGGAAAACCAGGAGTTGGGTAGGCAGATGTCCCAGGGACGCATCGCCCAGCTGGAGGCTGAGTTGGCCCTGCAGAAGAAATACAGCGAGGAGCTCAAGAGCAGTCAAGACGAGTTGAACGACTTTATCATCCAGCTAGACGAAGAGGTGGAGGGGATGCAGAGCACCATCCTCGTCCTGCAGCAGCAGTTGAAAGAGTCTCGTCAGCAGCTGTCTCAAACTCAGGGGGCATTGGCCGGAGCAGGAACCAGCAGGACTTCACCCGCTGCTTCCTGCTCGTCCGCTGAACCGTCCACCCAGCCTGAGCAGGCCAGCGCACCCTCTGAACCAATGGGTAAAGATTACGGGAGGGTCTCCAACGGACCAAGCAACGGCAACTCATCCCAGAGGAGCGAGACCACCACACCCAGCCTGTACCGGGAAGTCAGCAGCACTGAGGAAGACTTCCCCATGTCCCCCATGGTTTCCAGCCCCGGTGAAACTGAGACCAAACTGTCCAACCACTCTGAGGAGGCTTCAGGGAGTCAGACTGCTGCTGGGAGAGTTGGAGGACCTGTGGGTTTcgggagccagctgagtgcagggTACGAGAGCGTGGACTCTCCGACAGGCAGCGAGACGTCATTGACTCAGCACTCGAATGACACAGACTCCACCACCGACCCCCACGAGGACAAGGCTGCCCTGGTGACCAAGGGCACCAGGACTGCAGGGTCACGGCACTCTCAGAACGGCCTGGACTCCAGCACGAGCGACAGTGCGGTTTTGTAATGTACTTTGACGtgtactgtcttttctttttcttttttatacaatatacaaaCAAGGCAACAAATGCATAGTCTGTAACACAGCGCTGCTGTCCAAGATATTTGGTTTTCACCCTCCTCCCCTTGCCTATCGTGATGCCTCTGTCACATTTGTGTTGCTAAACAGGGATAGAACAGGTATGGGTTAATGTTAGATTTGAATTGAGTGGATGTATGGTTTAAAACTAGTATGTTTCATTCTGCTGTTTCTTTGAGCATGTCTATGCTGTTCTCGTTGGAGCTCTTGACACTGAAATCAGGCATCTGGTGTTGTAACTCATCGTCAAAAGTCAGTAAAATCACTGAATTACAGTAGCTTCGCAATATTCAAGGTCATTTTTAGATGTtggcctgtgttttttttttttaatgcaatttTAATTTTTCATTGACAAAAAATTCTGTTCAAAAGACTGTTGAATTGTGAGTAGTTTATATGCGATGTTCATATTATTCTGACTTCAGTCCTTTTCATGTACTGACCAAATACCAATAAAGATTTTAATACTA

Function

symbol description
wtap Acts upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nucleus. Is expressed in head. Orthologous to human WTAP (WT1 associated protein).

NR:

description
PREDICTED: pre-mRNA-splicing regulator WTAP

GO: NA

KEGG:

id description
K22824 WTAP; pre-mRNA-splicing regulator WTAP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781903.1 True 2036 mRNA 0.49 8 21680522 21686917

Neighbor

gene id symbol gene type direction distance location
fndc1 fndc1 coding upstream 26954 21617339 ~ 21653568 (+)
drc1 NA coding upstream 155220 21512574 ~ 21525302 (+)
ostm1 ostm1 coding upstream 173698 21501751 ~ 21506824 (+)
snx3 snx3 coding upstream 206500 21457561 ~ 21474022 (+)
sesn1 sesn1,LOC102782344 coding upstream 357436 21274857 ~ 21323086 (+)
acat2 acat2,LOC102788057 coding downstream 363 21687280 ~ 21693126 (+)
LOC120546757 NA coding downstream 36725 21723642 ~ 21727342 (+)
LOC120546759 NA coding downstream 64375 21751292 ~ 21754890 (+)
LOC120547079 NA coding downstream 119098 21806015 ~ 21809674 (+)
LOC120547078 NA coding downstream 147561 21834478 ~ 21843556 (+)
G186297 NA non-coding upstream 137741 21540588 ~ 21542781 (+)
G186220 NA non-coding upstream 205218 21474552 ~ 21475304 (+)
G186210 NA non-coding upstream 331941 21347944 ~ 21348581 (+)
LOC120546175 NA non-coding upstream 527338 21151444 ~ 21153184 (+)
G186106 NA non-coding upstream 618546 21060757 ~ 21061976 (+)
LOC120546760 NA non-coding downstream 58664 21745581 ~ 21746554 (+)
LOC120547080 NA non-coding downstream 146031 21832948 ~ 21833782 (+)
G186452 NA non-coding downstream 607525 22294442 ~ 22294697 (+)
G186506 NA non-coding downstream 848742 22535659 ~ 22537716 (+)
G186578 rhob,LOC104947257 non-coding downstream 1030053 22716970 ~ 22719893 (+)
gtf2h5 gtf2h5 other upstream 507883 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 1820305 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 2032366 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 2059739 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 2138690 19429595 ~ 19541832 (+)
erh erh,LOC100699790,LOC101174968 other downstream 257826 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 298862 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 594050 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1120962 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 1275116 22962033 ~ 22966010 (+)

Expression


Co-expression Network