rsph9 (rsph9)


Basic Information

Item Value
gene id rsph9
gene name rsph9
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16605386 ~ 16609726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781925.1
ATGGACTCGAATTCGTTATACTATTCTTTGGAACTCGTTGCCGGTAGCGGAAGTACTTTAAACGTTGAGCAAAGAACCGCACTGCAGACTTCCTTGGTGATCCTGAAGAAAAACTACAAGTTCCATCGAGTCTTGTTTTGGGGCAAAATATTGGGTTTAAAGGAGGATTATTTTATCGCTCAGGGGAGAGGAGAAGATGAACTGCAGGATAAAAAGAATCTCTATAGCTTCAACTGCATGGACTGGTTCCTGCTCCCTCCTGCCACCGAATCTATGATGGAGAAAGTGTCCAAAATCAAGAGTCGCTTCATAGGAGACCCCTCATTTGTGTATGAGCACATTGAGATCCGCAGGCAAGGAGAGAGGGATGACGCTACAGAGGAGGTAGTGATTAAGGTCAATGAGGAGAGCCGGCTGGCAGTGACAGTTCATCAGATCGATGATGAAGTGTCCGTGGTACCACGTGGAGCCTTCGTCAAGAGTCCACATGGTCTTGTCCAGATGAACCGCAGCTTTGGTGGTCTGTCTCACTCAGAAGCAGGGAAGCTTGACAACTTCCTTCACTTCAGCGAAGCAAAGAACCTGAAGAAGAAATCCATCCTGGAAATGGGTGATTTGAACCCAGCCATCGACTTCCTGGATGTACTGAGTGATGACATTCCTAAAGGATCGTGGAGTCTTCAGCTTGAATGTGCCAGCAAAGTGTGCGTGCTTCGCAGCCTGTTGTGGCTTGGCCTGAGCTTCTACCATGTGCCAATGACACCTCAGCATGGATACATGTATATCGGTGATGGGATCAAGAATTTGGACCTTCCCTTCAtgctataaaaaaacaaaaaaaaacaaaagagagacATTTCctgtttcaagctacaaactcatgtgtctctgttgtTCACATCAACCCTCAACATGTATTCTA
>XM_039781926.1
GGTTGTTGTCATTAGCAACCAAACAAGCGTTTGGACCTGAAGGCTTTGGttaactagctagctgttagGTTGGCAAGTAGTTTAATACACCAGCTACGTTACGGTAACTAGCTAATATCTACGCTACAGAGTCGTTTATTAGCTACGTAAACAATGGACTCGAATTCGTTATACTATTCTTTGGAACTCGTTGCCGGTAGCGGAAGTACTTTAAACGTTGAGCAAAGAACCGCACTGCAGACTTCCTTGGTGATCCTGAAGAAAAACTACAAGTTCCATCGAGTCTTGTTTTGGGGCAAAATATTGGGTTTAAAGGAGGATTATTTTATCGCTCAGGGGAGAGGAGAAGATGAACTGCAGGATAAAAAGAATCTCTATAGCTTCAACTGCATGGACTGGTTCCTGCTCCCTCCTGCCACCGAATCTATGATGGAGAAAGTGTCCAAAATCAAGAGTCGCTTCATAGGAGACCCCTCATTTGTGTATGAGCACATTGAGATCCGCAGGCAAGGAGAGAGGGATGACGCTACAGAGGAGGTAGTGGTCAATGAGGAGAGCCGGCTGGCAGTGACAGTTCATCAGATCGATGATGAAGTGTCCGTGGTACCACGTGGAGCCTTCGTCAAGAGTCCACATGGTCTTGTCCAGATGAACCGCAGCTTTGGTGGTCTGTCTCACTCAGAAGCAGGGAAGCTTGACAACTTCCTTCACTTCAGCGAAGCAAAGAACCTGAAGAAGAAATCCATCCTGGAAATGGGTGATTTGAACCCAGCCATCGACTTCCTGGATGTACTGAGTGATGACATTCCTAAAGGATCGTGGAGTCTTCAGCTTGAATGTGCCAGCAAAGTGTGCGTGCTTCGCAGCCTGTTGTGGCTTGGCCTGAGCTTCTACCATGTGCCAATGACACCTCAGCATGGATACATGTATATCGGTGATGGGATCAAGAATTTGGACCTTCCCTTCAtgctataaaaaaacaaaaaaaaacaaaagagagacATTTCctgtttcaagctacaaactcatgtgtctctgttgtTCACATCAACCCTCAACATGTATTCTA

Function

symbol description
rsph9 Acts upstream of or within axoneme assembly and cilium movement. Located in axoneme and kinocilium. Is expressed in forerunner cell group; nervous system; pronephric duct; and spinal cord neural rod. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9).

NR:

description
radial spoke head protein 9 homolog

GO:

id name namespace
GO:0003341 cilium movement biological_process

KEGG:

id description
K19757 RSPH9; radial spoke head protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781925.1 False 922 mRNA 0.46 5 16605539 16609726
XM_039781926.1 True 1069 mRNA 0.45 5 16605386 16609726

Neighbor

gene id symbol gene type direction distance location
tmem63a LOC104944870 coding upstream 5924 16588850 ~ 16599462 (+)
faxca LOC104925628,LOC104963907,LOC103380784,LOC102789719,LOC101473580,LOC102289837 coding upstream 60891 16536311 ~ 16544495 (+)
ccnc ccnc coding upstream 71355 16527989 ~ 16534031 (+)
pgm3 pgm3 coding upstream 81720 16518444 ~ 16523666 (+)
LOC120546559 LOC102791590 coding upstream 114747 16487014 ~ 16490639 (+)
LOC120546775 adcy3,LOC102197140,LOC101471325 coding downstream 120337 16730063 ~ 16744830 (+)
wdr26b wdr26,LOC104925620,LOC103363787 coding downstream 136447 16746173 ~ 16763444 (+)
lpin1b lpin1,LOC104949544 coding downstream 227808 16837534 ~ 16856613 (+)
gnpat2 gnpat coding downstream 248482 16858208 ~ 16873108 (+)
fam228a NA coding downstream 266593 16876319 ~ 16880335 (+)
LOC120546561 NA non-coding upstream 89053 16493194 ~ 16516333 (+)
G184633 LOC101069623,LOC100711363,LOC102312356,LOC101478077,LOC102202636 non-coding upstream 191885 16411676 ~ 16413501 (+)
G184618 NA non-coding upstream 248838 16291211 ~ 16356548 (+)
G184584 NA non-coding upstream 557705 16045809 ~ 16047681 (+)
G184540 NA non-coding upstream 677724 15926071 ~ 15927662 (+)
G184851 naga,LOC104944830 non-coding downstream 115151 16724877 ~ 16726392 (+)
G184948 NA non-coding downstream 323970 16933696 ~ 16956864 (+)
G184995 NA non-coding downstream 671389 17281115 ~ 17299420 (+)
G185022 NA non-coding downstream 783808 17393534 ~ 17397048 (+)
LOC120546618 NA non-coding downstream 820294 17430020 ~ 17447803 (+)
G184628 LOC104949332,LOC106633454,LOC101477798,LOC102792991 other upstream 201309 16399438 ~ 16404077 (+)
nkain2 nkain2 other upstream 213535 16248094 ~ 16391851 (+)
cenpw NA other upstream 223530 16379479 ~ 16381856 (+)
LOC120546249 NA other upstream 637263 15914586 ~ 15968123 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other upstream 885754 15694944 ~ 15719632 (+)
vegfab vegfa other downstream 61860 16671586 ~ 16686079 (+)
si:ch211-57i17.1 LOC103363786 other downstream 155819 16765545 ~ 16779935 (+)
G184859 NA other downstream 215968 16825694 ~ 16833314 (+)
G184996 sec63 other downstream 683928 17293654 ~ 17295701 (+)
map7b map7,LOC107374525 other downstream 732111 17341837 ~ 17375059 (+)

Expression


Co-expression Network