si:ch211-225h24.2 (tdrp)


Basic Information

Item Value
gene id si:ch211-225h24.2
gene name tdrp
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19584702 ~ 19598107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781954.1
GGGAGGAGCGACGAGATCCAGGTGGTCGAGCCTGCGTAAAAACGCACCAAACACAAGTCAAAACCGAAATAGTGAGTGTCATAGAAAAAAAAGCTCAATGCTCGCACTCCTGGCACTTCTATGAATGAATAACCTGTGTTCCGAAAACGCCTCCTGGATCAGCTGCTGCAGAAATAACCAAAACAGCGGAACGCGCTGCGGTGGTGCGTTGCTGCCATCTCCACAGAAAACGGACAAAACAGGACCAAACGGTTCGGTGTGAACTCCAGATTTGTGACCGAAGAAGGCAACTTTAATTCAAACGATCAAGACGGCTTGTTTCAGCGACAAGTGGAGATATGTTCAAGAAAAGCAAGAGTAAAGTGCTGGTGGATTATGCGTCAGAGGAAGACGACATGTCCTGGCACTATCATCACTCCTACAAGGACAAAGACatagaaggagaggaagaggaagaggaggaggaagctgTCACTGCAGTATCCAAGGAGGCCAGGGTGAAGAAGATCATGTccaagaaagagaagagggagaagaagatGTTCTCCTCTAAAGATGATGAACACTTCTTGTTGACCGGAGTAAAGCTGGCGGACCGCAGAGGGTCTCACAAGAAAATCAAGGATGACGACAAGGAGAAGGAAAAGAAGGACAAGCCAGACAAGGGCCACTGTTTCTGGGAGAGCGTTACCATGACGATGAGGCAAATCTCCCCAACCAAAAAactggagaagatggagggcTGGGAGCCGCCTCACCTGGAGAACTTAACTGAGACTGTGACCGACGAAGCCCCAGAGGACAAAAGCCAGAAAGGGGGCTCGCCAGTGTCCTTCCCCGACTCTCTAGGCCTCCCGTTGGAACTGGCCTCCTGGGCGGGCCGGGGTCTTGAGGAGGACTCCTCCCGCTATGCTAATCTGTCGGACTCCAAGGATTCAACAGCTGCCGTCAGGTGGACAGCCCGCGCCAAAGTCAAGCTGGCTGGCATCAGCAGGATGAGCAGAGGGATTGTGTCAGAAAGTGCTTGGGAGGGGTTTAAATAGAAGCCATTTTACCTTCTATGCCCCTCCCTCCTCACCAATGTACCATCAGTAAAGAGGATGAAGACCTGAACCAAATATCTGCTCGTCTCTGTTATCTAGTTCTGGATGAAAACGGTGTTAATGTCAACTGGTATTGAGATGCTGTTGTAAAGCCCTGAACATAACACATGATGTTTGTCCCTTTTATTTTAGCTTTGAAGACCTTCGAGACAATATATGTCAGTTTTATGAATGGACTTTTTTTGGCTACTTTTAAATCACTGGCATAACTGTAAATTACAACAAATAAAAGCCTTAAACTACTGTACAGTTTTAACTGTGATACCCACAGGCATGCCGTTtagacactttacagtatatTGCCAAGAGTGAGtagagtgattttcatgtcatTATTGTGCCTGTCAGTGGTAGAGAATCAATACGAATATGCAAACCTGCTACTGAAGACTTGGTTTTCAGTTCCTTTCTGTCTATGCAGTTACAGCATCTGtaatttattcataaaaaaTGGGCTTAAAATCTGTGCAATCATGAATCAGTTTATGAAACACGTTTGATCTGGAATATCAGcgtgtttgtatgcgtgtgtgtgaacAAGAGGTAGAGGAGAGGATATGAGTTTTTTGATAGACAGGCATGCACATTTGTACAATAGAATGAGATTTGAAGTTCTGTTGTTGTGCTGGGAATATGCAGGGGGAATAAATCTAAGCAACCCCTACAGTGTCACAGATTGATACGTTTAAATCCAAtgctgaatattttttttaatttgtaaggACAAGATGACAATGACAACTCAAACTCTGTGTATACGTGTTTCTCGAGAAAAGCAGTGAATCCATGCACCTGTGAAGTGCCTTGTATCAATAGAATGACGTGTTGCTGTACATTTGAACTAGACCAAAAACTGAGCAAAAAAACGGCTGAGCTCATCACAGTGTCTACGCATGTGGGTCAACCCAGCATGAATTTTTGCTGCATCAgccattaaagtgctcatattacgcttttcccctttcctttattgtgttatatatcttttttgtgcatgttataggtttaaaaagtgaaaaagcccaaagtccaccccatctccaacagaaaacacggttcacaaactgctccaaacaggtctattgtagtccagcctttacttctgctggttactttgtaacacacgttataatgctcgactagctgctagcgtggcactccctcatccTCTGCTTCTTACAGTAATGGCTAGTTGTCTTTtgctagctactgcgcatgtgcaactccccaCAAATattgaacagaagtgtgatgcctcactctgtagctaaaacagagagctcaccacacagggtgaaaagaggagctgcagcaatgtgcagtacaacaaaaatatggtgtttaaaattaaaccatattaacctattctggtacaacctctaaatataattatgaacctgaaaatgagcataatatgaacactttaagaAAGTAATTGGTTTCCAATCACTAGATGCTGTTAGCTTCACCAGCAGAAGCAAGTGTTTTTGCGCTGCGTTATATAAAAACCTGGTCTGTTTGTTAATGCCATTTGCATATCTGTATATTGTATTGGACTGAGACAATGATTTTTCTTTAGGTGAATGAGAAACGTCATGCCACTGATGTTtgcttctcttctttttctcagtTTTTATTGGTTTGCTGAATTTGTTTGATACTGAAGtctgtttcattgcagccagaAGTGAACACAGATACAGGGCCACTTCCAGGGATGCCCGTATCCTGTATTTATTCACTAAACAGCTTGGTCACATTTTCTCAAGCAGAATAAAGATCTAGTCTGAC
>XM_039781955.1
GTGGGAGGAGCGACGAGATCCAGGTGGTCGAGCCTGCGTAAAAACGCACCAAACACAAGTCAAAACCGAAATAGTGAGTGTCATAGAAAAAAAAGCTCAATGCTCGCACTCCTGGCACTTCTATGAATGAATAACCTGTGTTCCGAAAACGCCTCCTGGATCAGCTGCTGCAGAAATAACCAAAACAGCGGAACGCGCTGCGGTGGTGCGTTGCTGCCATCTCCACAGAAAACGGACAAAACAGGACCAAACGGTTCGGTGTGAACTCCAGATTTGTGACCGAAGAAGGCAACTTTAATTCAAACGATCAAGACGGCTTGTTTCAGCGACAAGTGGAGATATGTTCAAGAAAAGCAAGAGTAAAGTGCTGGTGGATTATGCGTCAGAGGAAGACGACATGTCCTGGCACTATCATCACTCCTACAAGGAGGCCAGGGTGAAGAAGATCATGTccaagaaagagaagagggagaagaagatGTTCTCCTCTAAAGATGATGAACACTTCTTGTTGACCGGAGTAAAGCTGGCGGACCGCAGAGGGTCTCACAAGAAAATCAAGGATGACGACAAGGAGAAGGAAAAGAAGGACAAGCCAGACAAGGGCCACTGTTTCTGGGAGAGCGTTACCATGACGATGAGGCAAATCTCCCCAACCAAAAAactggagaagatggagggcTGGGAGCCGCCTCACCTGGAGAACTTAACTGAGACTGTGACCGACGAAGCCCCAGAGGACAAAAGCCAGAAAGGGGGCTCGCCAGTGTCCTTCCCCGACTCTCTAGGCCTCCCGTTGGAACTGGCCTCCTGGGCGGGCCGGGGTCTTGAGGAGGACTCCTCCCGCTATGCTAATCTGTCGGACTCCAAGGATTCAACAGCTGCCGTCAGGTGGACAGCCCGCGCCAAAGTCAAGCTGGCTGGCATCAGCAGGATGAGCAGAGGGATTGTGTCAGAAAGTGCTTGGGAGGGGTTTAAATAGAAGCCATTTTACCTTCTATGCCCCTCCCTCCTCACCAATGTACCATCAGTAAAGAGGATGAAGACCTGAACCAAATATCTGCTCGTCTCTGTTATCTAGTTCTGGATGAAAACGGTGTTAATGTCAACTGGTATTGAGATGCTGTTGTAAAGCCCTGAACATAACACATGATGTTTGTCCCTTTTATTTTAGCTTTGAAGACCTTCGAGACAATATATGTCAGTTTTATGAATGGACTTTTTTTGGCTACTTTTAAATCACTGGCATAACTGTAAATTACAACAAATAAAAGCCTTAAACTACTGTACAGTTTTAACTGTGATACCCACAGGCATGCCGTTtagacactttacagtatatTGCCAAGAGTGAGtagagtgattttcatgtcatTATTGTGCCTGTCAGTGGTAGAGAATCAATACGAATATGCAAACCTGCTACTGAAGACTTGGTTTTCAGTTCCTTTCTGTCTATGCAGTTACAGCATCTGtaatttattcataaaaaaTGGGCTTAAAATCTGTGCAATCATGAATCAGTTTATGAAACACGTTTGATCTGGAATATCAGcgtgtttgtatgcgtgtgtgtgaacAAGAGGTAGAGGAGAGGATATGAGTTTTTTGATAGACAGGCATGCACATTTGTACAATAGAATGAGATTTGAAGTTCTGTTGTTGTGCTGGGAATATGCAGGGGGAATAAATCTAAGCAACCCCTACAGTGTCACAGATTGATACGTTTAAATCCAAtgctgaatattttttttaatttgtaaggACAAGATGACAATGACAACTCAAACTCTGTGTATACGTGTTTCTCGAGAAAAGCAGTGAATCCATGCACCTGTGAAGTGCCTTGTATCAATAGAATGACGTGTTGCTGTACATTTGAACTAGACCAAAAACTGAGCAAAAAAACGGCTGAGCTCATCACAGTGTCTACGCATGTGGGTCAACCCAGCATGAATTTTTGCTGCATCAgccattaaagtgctcatattacgcttttcccctttcctttattgtgttatatatcttttttgtgcatgttataggtttaaaaagtgaaaaagcccaaagtccaccccatctccaacagaaaacacggttcacaaactgctccaaacaggtctattgtagtccagcctttacttctgctggttactttgtaacacacgttataatgctcgactagctgctagcgtggcactccctcatccTCTGCTTCTTACAGTAATGGCTAGTTGTCTTTtgctagctactgcgcatgtgcaactccccaCAAATattgaacagaagtgtgatgcctcactctgtagctaaaacagagagctcaccacacagggtgaaaagaggagctgcagcaatgtgcagtacaacaaaaatatggtgtttaaaattaaaccatattaacctattctggtacaacctctaaatataattatgaacctgaaaatgagcataatatgaacactttaagaAAGTAATTGGTTTCCAATCACTAGATGCTGTTAGCTTCACCAGCAGAAGCAAGTGTTTTTGCGCTGCGTTATATAAAAACCTGGTCTGTTTGTTAATGCCATTTGCATATCTGTATATTGTATTGGACTGAGACAATGATTTTTCTTTAGGTGAATGAGAAACGTCATGCCACTGATGTTtgcttctcttctttttctcagtTTTTATTGGTTTGCTGAATTTGTTTGATACTGAAGtctgtttcattgcagccagaAGTGAACACAGATACAGGGCCACTTCCAGGGATGCCCGTATCCTGTATTTATTCACTAAACAGCTTGGTCACATTTTCTCAAGCAGAATAAAGATCTAGTCTGAC

Function

symbol description
tdrp Acts upstream of or within spermatogenesis. Located in cytosol and nucleus.

NR:

description
testis development-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781954.1 True 2894 mRNA 0.43 4 19584704 19598107
XM_039781955.1 False 2833 mRNA 0.43 3 19584702 19598107

Neighbor

gene id symbol gene type direction distance location
lin9 lin9 coding upstream 172004 19403856 ~ 19412698 (+)
parp1 parp1,LOC102777090 coding upstream 181503 19391005 ~ 19403199 (+)
LOC120546239 NA coding upstream 251086 19328007 ~ 19333616 (+)
smyd2b smyd2,LOC103360985 coding upstream 315304 19260262 ~ 19269398 (+)
rps6kc1 rps6kc1 coding upstream 458043 19102583 ~ 19126659 (+)
LOC120546417 NA coding downstream 101615 19699722 ~ 19703391 (+)
si:dkey-119f1.1 smc6 coding downstream 114557 19712664 ~ 19731224 (+)
fig4a fig4,LOC102794534 coding downstream 147070 19745177 ~ 19830843 (+)
LOC120546286 gpr6,LOC104945012 coding downstream 236378 19834485 ~ 19837398 (+)
cdc40 cdc40,LOC103135076 coding downstream 321366 19919473 ~ 19944031 (+)
G185696 NA non-coding upstream 30467 19553274 ~ 19554235 (+)
G185656 NA non-coding upstream 305345 19278107 ~ 19279357 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 500918 19082696 ~ 19083784 (+)
G185593 NA non-coding upstream 538595 19045414 ~ 19046107 (+)
G185592 kcnk2 non-coding upstream 541154 19043224 ~ 19043548 (+)
G185711 NA non-coding downstream 54130 19652237 ~ 19652575 (+)
G185716 tmem18 non-coding downstream 94029 19692136 ~ 19693056 (+)
G185793 NA non-coding downstream 110224 19708331 ~ 19708930 (+)
G185794 NA non-coding downstream 111107 19709214 ~ 19709512 (+)
G185795 NA non-coding downstream 113420 19711527 ~ 19711832 (+)
nhsl1b nhsl1,LOC101470763 other upstream 42870 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 157213 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other upstream 195479 19367720 ~ 19389223 (+)
LOC120546624 prox1 other upstream 347669 19204154 ~ 19237033 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 872708 18705856 ~ 18711994 (+)
acp1 acp1 other downstream 35393 19633500 ~ 19648156 (+)
kif25 LOC104961976,LOC100703631 other downstream 254536 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1572841 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2346636 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2387672 21985779 ~ 22065589 (+)

Expression


Co-expression Network