tmed10 (tmed10)


Basic Information

Item Value
gene id tmed10
gene name tmed10
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18717023 ~ 18722986 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782206.1
GAGCTGGAACTCGGTGTTAAACTGGTTGGCTGGCACGGGCTGGTTGGTTGAGGGTAGCCATGGCTCGACTCGCTGCGTTACTGTTGTTACCGGTTCTTATTGAATCGGtgttttgcatttctttctttttaccgGTTAACTCAAGAAAGTGTTTACGGGAGGAGATCCACAAAGACGTCCTTGTCACGGGGGAGTATGAAATAACGGAACAGGCGAACACCAAAACTAATCTGAAGATCACAGATTCCTCCAGCCACACTCTTTACTCCAAGGAAGATGCAACAAAAGGAAAGTTTGCATTCACCACAGAGGACTATGACATGTTTGAGGTTTGCTTTGAAAGCAAATCACCCATGgGAACTGGAAGAGTGCCTGACCAGCTGGTCAATCTGGACATGAAGCATGGTGTGGAGGCGAAAAACTATGAAGAGATTGCCAAGGTGGAGAAGCTGAAGCCTCTCGAGGTCGAGCTGAGGCGACTGGAGGACCTGTCGGAGTCCATCGTCAATGACTTTGCTTACatgaagaagagagaggaggagatgcGGGACACCAATGAGTCCACCAACACACGTGTGCTGTACTTCAGCATATTCTCCATGTGCTGTCTCATTGGGCTGGCTACATGGCAGGTCTTCTACTTGCGGCGCTTCTTCAAGGCAAAGAAGCTGATCGAGTAGAACAACCCGTAGCTCCTTACCTCGGGGGAAGATGCCTGCCGGTCAGCCAACACATCCAAACATCCACCTTCCTTGGACTAGCTTCAGCAAACAACAGCAAGTGGGGTTGACGGCCTCAAATTCTATTTTTCACGGCTGTAAGAGAGAGTACCAAGGTTGTcctctgaaaaaaagaaaaaaaaattaatttcattTCCTTATTTAGTGGTTTGAAACATGAGAAGCGCTGTAGGGAGAAGTGCACTGTGAGACGTGGGAGGCGTATGTCACTGCATTAGTGATATACGTCCATCTCATGGTACTTTACGTTTCTGTCTGCACTGTTTTGAATGTTGCAGCTTACTGAATAAGAACTTGTTCCTTCAACCAGTTAAAATGATGTTTGATTTTGAGCTCAGTTTGAATGGATGTGCCATGAGCGAATGTCTTTTGCCCTTCTGTTGATGTACACATTCTTTGCCATGCCAAGCAAACTAGATCCTTGGTGCCCTTTTATCAAGTGAAGGCTATTTGAAAAAGTGGTTTGTTGTTACTTTGATGGGAAAGATAGCAACCACTTCTGTGTTATTTCACTTAATTTGCATACATGTTTGGTAGCTAAATTTAACCGTGTCTTTAGTTTGTTTTCATATTGTAAATGCTACTTAGTTGCTTCTAAAGGtttatttttggggggttgTGAGTTTTCATAGTAATATTCTCTTGGTTATAAATTAGGTCACTTCTATATGCTCTTGCACGTTCTAGTTTTTGTTTGTGAAACACCTGAAAAACAATTTGTCACAAATCAATGGTAGCCAGAAACCAAAACCCTTGTCCTTAGGAGTTTGCAGCATTATATTTCATGTATATGGCTATGAGTAATTTAACCACCTGACTTTTATGATacaattcatatatatatatatatttgtgcaaGTTTTTCTTGTCAGAGGTTTTGACAGGAAATGTGAAATAGGCAATCCAAACCATTTCTGAAATTTCCTTTCAGTCGTGCGCCCCTTTTATTCACACACAATTTTCAAAATATCACTTGCTAATTACAGTGCCGATCCATCCAGCATGCTTCTTTAGAAATGCTTTTGAGGCTTGGGTTACATGGGAATGTGGGTGGTTGCAAATATTCAGATTGTTTTTGGCAGGGATTAATTGAGGCATCTGTCAGAGGTACATTTTTAACAATGGACATGCGCATTGTGCGCAATCAATGATTTTTATGTTGACTGATAAATTTTGTAAATTTGTGTTGGGCTTTTATTCAATAAAATATTGGATGGATTTACATTA

Function

symbol description
tmed10 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in axis; hatching gland; notochord; pancreas; and polster. Orthologous to human TMED10 (transmembrane p24 trafficking protein 10).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 10

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20352 TMED10, ERV25; p24 family protein delta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782206.1 True 1967 mRNA 0.41 5 18717023 18722986

Neighbor

gene id symbol gene type direction distance location
fosab LOC104951064,LOC103372631,LOC100709203 coding upstream 18919 18695655 ~ 18698104 (+)
LOC120547135 LOC104964429,LOC103372634 coding upstream 62509 18648301 ~ 18654514 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding upstream 135900 18500991 ~ 18581123 (+)
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding upstream 274761 18419656 ~ 18442262 (+)
batf batf coding upstream 297863 18414012 ~ 18419160 (+)
eif2b2 eif2b2 coding downstream 10342 18733328 ~ 18737691 (+)
LOC120547336 LOC104951086,LOC103372628 coding downstream 31907 18754893 ~ 18760888 (+)
LOC120546187 acss1,LOC100712210,LOC102211118,LOC102308435,LOC101486165,LOC103364973 coding downstream 38431 18761417 ~ 18779102 (+)
LOC120546186 kcnh5,LOC103364987 coding downstream 75271 18798257 ~ 18813714 (+)
LOC120546190 l3hypdh coding downstream 91623 18814609 ~ 18818443 (+)
G185471 NA non-coding upstream 11789 18703965 ~ 18705234 (+)
LOC120546607 NA non-coding upstream 26990 18666640 ~ 18690033 (+)
G185415 LOC106525279 non-coding upstream 71869 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 76642 18636374 ~ 18640381 (+)
LOC120546827 NA non-coding upstream 252995 18443952 ~ 18464028 (+)
G185495 daam1,LOC108240128 non-coding downstream 96098 18819084 ~ 18821146 (+)
G185589 NA non-coding downstream 291740 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 299710 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 301278 19024264 ~ 19024578 (+)
G185592 kcnk2 non-coding downstream 320238 19043224 ~ 19043548 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 5029 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 81971 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 576763 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 662097 18020956 ~ 18054926 (+)
G185237 NA other upstream 799775 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 481168 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 631630 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 644734 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 706609 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 849587 19572573 ~ 19620783 (+)

Expression


Co-expression Network