rnf217 (rnf217,LOC106571519)


Basic Information

Item Value
gene id rnf217
gene name rnf217,LOC106571519
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16340938 ~ 16352655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782560.1
CGCTGCTCTCCTACATGCTGACGACGAGACCCCGGAAGCACCGAGCTGCCTGcctgctttgttttgttttggtagTGGAGTTGGAGAAGAGGTAGAGAGGCCGAGGTCCGTCCGGGAGAGAACCGCTCACTAAATGGGGAGAGCCATATCGGGGATGGAAGATGACAGACCGATAGCCGACGCCTGTAAAATGCCGAGTTTTATCAGCGGTTTCGAGGAGGAGAGGGTGAAATTGTCCCGTAACCTGCCGGAAGAAACTTCCTTCACGGACAGCAAAGTTGAGCACTCGGTCAGGGATTTGAGCCGTCGTGTCACCAGATCAAACTCGCGGTTATCCCTGGACGGAGGTGAGCGGGACTCGGAGGACAGGAGCAGCGAGGAGGAGAGGGATGCGaagggcaacaacaacaacaactgcaacggcggaggaggagagaggaggaggagggcgagCGCTGTCGAGATTTTGAGGAGGAATTTCGGGGTTTCAaaatctccctctctgtgtctaaATACAAACAGCCGGATGCAGCGCGGCGCGGAGCACGAACAACATCGCGAAGGAAATGTTAATAACCACGTTTATAACGGTTATGGAACCGAACGTGGCGAATGTAAAAAGTCGGAGCGTGAAACGGGCGAAGCGGGTACTAAAAACGAGCCAACTTTGAACGACTTGACTTCGGTTGTACAAAGAGTTGAATTTGTAACCGTTAACGTTGCTGGTCAGCGCCATCGTAAACGTGACAGTGACAGCAACACAGTAGCTTTAGATGATTCTTTGAACACTAAAGAACACGTCTACTGCACTGTGTACTGCATCGCTAACGACAGAAAAGACGTTGTAATCACAGACGATGAAACGGTCACATCTGACGCATCAAAAATGGACTTGGAGACAGAACAGGAAGCAGGCTCGAGTCCCGAACCGGCTCTGTACACATTGGACGACCTGGTGGATCCTTTCTGGGACATGACCCACCCGTTGTCCATGGAACAGGCCGGTGCGGGGACTACGATGCAGAGTTGCCGGGTGTGCCTGGAAGAGAAAACCATCGCACCCCTGCCCTGCTGCAGGAAGGCCGTGTGCGATGAGTGTCTGAAACTCTACGTCAGCTCTCAGGTGCGAGTAGCCAAATCTTACATCAGCTGTCCAATCCCAGAGTGCAGTGGCTTCCTGGAGGAGGGAGTGGTAATTTCCCATTTAGCCAATGAAGACGTAGCAAAATACCGTTACTTTTTGGAGCTGAGTCAGCTAGACTCGAGCACCAAACCATGCCCCCAGTGCAGTCAGTTCAGCTCTCTGAAGGGGAACAACTCCAACCACTCCGAGCACAAGTACAAGATCCAGTGTAGCAATTGCCAGTTTGTGTGGTGCTTTAAATGCCACGCACCATGGCACAATGGGGTCAGATGTCGCGAATACAGGAAAGGAGACAAGCTGCTTCGAAGCTGGGCTAGTGTCATAGAGCACGGGCAAAGAAACGCCCAGAAATGTCCACAGTGTAAGATCCATATTCAGCGTACAGAGGGATGTGACCATATGACATGTACGCAGTGTAACACTAACTTCTGTTACCGCTGTGGAGAGCGCTACCGACACCTAAGGTTTTTCGGGGACCATACATCCAACCTCAGTGTGTTTGGATGCAAGTTTCGCTATCTACCTGATAAACCTCATCTGAGACGGCTAATTAGAGGGTCTGTCTGTGCCACTAAGGTGCTGATAGCTCCAGTGGTCATTTTGTTGGTCATGGTGCTCGGAGCTTTCGCACTGGTGATAGGTAACACAATTATACAcgtgaacacacacatgcacaaaaaaatcaGGGTGAAGCTCCAGCGAGAGTGGCAACCCAAAATCAGCTAAATGGTTTGACTATATTACAGATATTTTCTTCCACACAGCAAAGCAGGTCCACTCTCTATGCAAAAATAACAAACATAATCATGCCACAAACTTTATATTGGCATGCATGTCAGTCATTCTCAGTTATATAAAGAGAAGTAAACTGCCAAAGCTTTAGATCCAAATTATCACTCTCTGGGTGACTGGCTTTTATTTCCTGAAACTACATTTACTAGTAAAATCATCCAGCTGCACTCTGTGAGCACTCCGTCAGACAGGGATGTGAACTATTGATGCCTTGGCTGAACTGTAATTAGTGTTAATCTCTTTCCCATGTCTGTGCGTCTGACAGATGATCCGCTGCGGGCTAACATGCCGTAATGGAAGAATCACATTTATTGTCATCGTTATTAGAATCAgtgctgtgctgctgctgctgtcttttTCAGCCTAATTAACATACACATCCAGTATGCCAAATATGTAGGCAGTTTGCTATAAGATAGAATAATCAAATCCATATAGAAAACTCATCAGAGCTTGACATTGACAGATAATTCAAAGATTTACATTGTACATTAATTAATTGGTAATTCAAATTAGTATCAATTGAAACAAGGTTTAAATCCATCTTTCTCCTCACTTCCGCTTCATCTTTACAACCACCTTCCCTGTCTGCAGGTTTGGTAGTTTTCCCGGTCTACTATGTGTgtaagaggaggaagaagcagCGCACACAGGGCTCCGGACGGTGGATCTGACTGCAACCTGCACTGCatctagaacacacacacacacacacccccacacacacaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagcttaAAAGACGAAGCCCGCATCTCCTCAGGGATGAACACGCCTGCCTGAGTCATCGCAAAAGTCTGAGAGGAACATCACGCAATTAACAATGGTGAATGGAGTTTTTAAGATGGAAGGAAGTATATAAACATATGAAGGACGGCCTGGATAATCATACTTCATCACGCAGAATATTTGTATTTCAGTAGACCGCTGCTGCAAAAGAAATGCTGGATATtcaagaagaaaaggaaaagaaaatgctaATTTAAACTAACAAATTTTTTCTTCAGATGATGGTTGACATGTGTTGCAATCCCCTTAAATCTCCACTAAATTTAACAGCATTGAACTTTCTTGCTGGCCACCTTTTGTCCCGGGCACAATACAGGAAGTTTCAGCAGTGTACATTTGACAAACGTTAGCTTGGAGCCCGTCAGTTAGCCTGATATGATGACATACTGTTGAATATTGTggatgaaagttttttttttaaaggtttgacAGTGGTGGATACAATTTGACTTGATAAACACAGACTGCTGGAAAATGGGAGGAGGACCTCACAGACGAATAATAGAGAAATGTGAGGAAATCTAATCTTCTTGTTGAACTTTTGCAAACGCTTCTTCAGTCATTTGTCAAAAGTGCAAGCTGGAAACTGAATTCAGGACCAAGCCATGATGGAAAAAAATGAGTTCTCACAGATGCAACAAAGCTGACATTGAATTTGTGCAATCTTCATCGAAAATTTGGACATTTGGAGTAAGCACACAGTATTCAAAATAATATGAAAGGACTTAATTTGGACGGATGGAAGGATGACACGTTACTATTCTTGGCTTTCCTGGATAACCTCGACTCTGCCTCAAGCTTTTGCTAGACAGAGTGAAAGTTGGGTCCTGTGTCCCCACCCTAAGAGTGACACCTAGTTTCAAAGGCCACACCAACCttagctttaaaaaaaggtgtCCTGTTTGCAACAAATATTAAGCCCACTGaccccttaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagtctctttcccaaaattcagccttggtgcagaattac
>XM_039782561.1
GCTGCTCTCCTACATGCTGACGACGAGACCCCGGAAGCACCGAGCTGCCTGcctgctttgttttgttttggtagTGGAGTTGGAGAAGAGGTAGAGAGGCCGAGGTCCGTCCGGGAGAGAACCGCTCACTAAATGGGGAGAGCCATATCGGGGATGGAAGATGACAGACCGATAGCCGACGCCTGTAAAATGCCGAGTTTTATCAGCGGTTTCGAGGAGGAGAGGGTGAAATTGTCCCGTAACCTGCCGGAAGAAACTTCCTTCACGGACAGCAAAGTTGAGCACTCGGTCAGGGATTTGAGCCGTCGTGTCACCAGATCAAACTCGCGGTTATCCCTGGACGGAGGTGAGCGGGACTCGGAGGACAGGAGCAGCGAGGAGGAGAGGGATGCGaagggcaacaacaacaacaactgcaacggcggaggaggagagaggaggaggagggcgagCGCTGTCGAGATTTTGAGGAGGAATTTCGGGGTTTCAaaatctccctctctgtgtctaaATACAAACAGCCGGATGCAGCGCGGCGCGGAGCACGAACAACATCGCGAAGGAAATGTTAATAACCACGTTTATAACGGTTATGGAACCGAACGTGGCGAATGTAAAAAGTCGGAGCGTGAAACGGGCGAAGCGGGTACTAAAAACGAGCCAACTTTGAACGACTTGACTTCGGTTGTACAAAGAGTTGAATTTGTAACCGTTAACGTTGCTGGTCAGCGCCATCGTAAACGTGACAGTGACAGCAACACAGTAGCTTTAGATGATTCTTTGAACACTAAAGAACACGTCTACTGCACTGTGTACTGCATCGCTAACGACAGAAAAGACGTTGTAATCACAGACGATGAAACGGTCACATCTGACGCATCAAAAATGGACTTGGAGACAGAACAGGAAGCAGGCTCGAGTCCCGAACCGGCTCTGTACACATTGGACGACCTGGTGGATCCTTTCTGGGACATGACCCACCCGTTGTCCATGGAACAGGCCGGTGCGGGGACTACGATGCAGAGTTGCCGGGTGTGCCTGGAAGAGAAAACCATCGCACCCCTGCCCTGCTGCAGGAAGGCCGTGTGCGATGAGTGTCTGAAACTCTACGTCAGCTCTCAGGTGCGAGTAGCCAAATCTTACATCAGCTGTCCAATCCCAGAGTGCAGTGGCTTCCTGGAGGAGGGAGTGGTAATTTCCCATTTAGCCAATGAAGACGTAGCAAAATACCGTTACTTTTTGGAGCTGAGTCAGCTAGACTCGAGCACCAAACCATGCCCCCAGTGCAGTCAGTTCAGCTCTCTGAAGGGGAACAACTCCAACCACTCCGAGCACAAGTACAAGATCCAGTGTAGCAATTGCCAGTTTGTGTGGTGCTTTAAATGCCACGCACCATGGCACAATGGGGTCAGATGTCGCGAATACAGGAAAGGAGACAAGCTGCTTCGAAGCTGGGCTAGTGTCATAGAGCACGGGCAAAGAAACGCCCAGAAATGTCCACAGTGTAAGATCCATATTCAGCGTACAGAGGGATGTGACCATATGACATGTACGCAGTGTAACACTAACTTCTGTTACCGCTGTGGAGAGCGCTACCGACACCTAAGGTTTTTCGGGGACCATACATCCAACCTCAGTGTGTTTGGATGCAAGTTTCGCTATCTACCTGATAAACCTCATCTGAGACGGCTAATTAGAGGGTCTGTCTGTGCCACTAAGGTGCTGATAGCTCCAGTGGTCATTTTGTTGGTCATGGTGCTCGGAGCTTTCGCACTGGTGATAGGTTTGGTAGTTTTCCCGGTCTACTATGTGTgtaagaggaggaagaagcagCGCACACAGGGCTCCGGACGGTGGATCTGACTGCAACCTGCACTGCatctagaacacacacacacacacacccccacacacacaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagcttaAAAGACGAAGCCCGCATCTCCTCAGGGATGAACACGCCTGCCTGAGTCATCGCAAAAGTCTGAGAGGAACATCACGCAATTAACAATGGTGAATGGAGTTTTTAAGATGGAAGGAAGTATATAAACATATGAAGGACGGCCTGGATAATCATACTTCATCACGCAGAATATTTGTATTTCAGTAGACCGCTGCTGCAAAAGAAATGCTGGATATtcaagaagaaaaggaaaagaaaatgctaATTTAAACTAACAAATTTTTTCTTCAGATGATGGTTGACATGTGTTGCAATCCCCTTAAATCTCCACTAAATTTAACAGCATTGAACTTTCTTGCTGGCCACCTTTTGTCCCGGGCACAATACAGGAAGTTTCAGCAGTGTACATTTGACAAACGTTAGCTTGGAGCCCGTCAGTTAGCCTGATATGATGACATACTGTTGAATATTGTggatgaaagttttttttttaaaggtttgacAGTGGTGGATACAATTTGACTTGATAAACACAGACTGCTGGAAAATGGGAGGAGGACCTCACAGACGAATAATAGAGAAATGTGAGGAAATCTAATCTTCTTGTTGAACTTTTGCAAACGCTTCTTCAGTCATTTGTCAAAAGTGCAAGCTGGAAACTGAATTCAGGACCAAGCCATGATGGAAAAAAATGAGTTCTCACAGATGCAACAAAGCTGACATTGAATTTGTGCAATCTTCATCGAAAATTTGGACATTTGGAGTAAGCACACAGTATTCAAAATAATATGAAAGGACTTAATTTGGACGGATGGAAGGATGACACGTTACTATTCTTGGCTTTCCTGGATAACCTCGACTCTGCCTCAAGCTTTTGCTAGACAGAGTGAAAGTTGGGTCCTGTGTCCCCACCCTAAGAGTGACACCTAGTTTCAAAGGCCACACCAACCttagctttaaaaaaaggtgtCCTGTTTGCAACAAATATTAAGCCCACTGaccccttaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagtctctttcccaaaattcagccttggtgcagaat

Function

symbol description
rnf217 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF217 (ring finger protein 217).

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase RNF217

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11977 RNF217, IBRDC1; E3 ubiquitin-protein ligase RNF217

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782560.1 True 3846 mRNA 0.46 6 16340938 16352655
XM_039782561.1 False 3096 mRNA 0.48 7 16340939 16352652

Neighbor

gene id symbol gene type direction distance location
med23 med23 coding upstream 214024 16109352 ~ 16126914 (+)
coq8aa coq8a coding upstream 298699 16016975 ~ 16042239 (+)
itpkb itpkb coding upstream 326079 15986083 ~ 16014859 (+)
tmem200a tmem200a coding upstream 463189 15853810 ~ 15877749 (+)
ccn2a ctgf coding upstream 564721 15772660 ~ 15776217 (+)
tpd52l1 tpd52l1 coding downstream 4904 16357559 ~ 16375214 (+)
LOC120547267 NA coding downstream 31616 16384271 ~ 16386778 (+)
LOC120547268 rnf146 coding downstream 35103 16387758 ~ 16390630 (+)
LOC120546559 LOC102791590 coding downstream 134359 16487014 ~ 16490639 (+)
pgm3 pgm3 coding downstream 165789 16518444 ~ 16523666 (+)
G184584 NA non-coding upstream 293257 16045809 ~ 16047681 (+)
G184540 NA non-coding upstream 413276 15926071 ~ 15927662 (+)
G184561 NA non-coding upstream 451353 15889365 ~ 15889585 (+)
G184526 sel1l,LOC104966051,LOC107585782,LOC107721334 non-coding upstream 542144 15797815 ~ 15798794 (+)
G184521 NA non-coding upstream 560392 15777229 ~ 15780546 (+)
G184633 LOC101069623,LOC100711363,LOC102312356,LOC101478077,LOC102202636 non-coding downstream 59021 16411676 ~ 16413501 (+)
LOC120546561 NA non-coding downstream 140539 16493194 ~ 16516333 (+)
G184796 NA non-coding downstream 243285 16595940 ~ 16610380 (+)
G184851 naga,LOC104944830 non-coding downstream 372222 16724877 ~ 16726392 (+)
G184948 NA non-coding downstream 581041 16933696 ~ 16956864 (+)
LOC120546249 NA other upstream 372815 15914586 ~ 15968123 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other upstream 621306 15694944 ~ 15719632 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other upstream 677277 15660573 ~ 15663661 (+)
G184458 NA other upstream 1022102 15301925 ~ 15318836 (+)
LOC120546207 NA other upstream 1047686 15289674 ~ 15293252 (+)
cenpw NA other downstream 26824 16379479 ~ 16381856 (+)
G184628 LOC104949332,LOC106633454,LOC101477798,LOC102792991 other downstream 46783 16399438 ~ 16404077 (+)
vegfab vegfa other downstream 318931 16671586 ~ 16686079 (+)
si:ch211-57i17.1 LOC103363786 other downstream 412890 16765545 ~ 16779935 (+)
G184859 NA other downstream 473039 16825694 ~ 16833314 (+)

Expression


Co-expression Network