snx3 (snx3)


Basic Information

Item Value
gene id snx3
gene name snx3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21457561 ~ 21474022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782671.1
CTTAACACTATCCCTAGCTGCTGGAAGGACAGGGGAGAAATGGCTGATACCATAGCTGACACAAGAAGGCTCTTCTCAAAGCCTCAGAACTTAAATGACGCCTATGGACCTCCAAGTAACTTTCTAGAGATTGATGTGAGCAACCCTGAGACCATCGGGGTTGGCAGGACCAGATATACCACGTATGAAGTCAGACTGAAGacCAACCTACCCATCTTCAAGCTGAAGGAGTCTAGTGTACGGAGGCGGTACAGCGACTTTGAGTGGCTCAGAGCGGAGCTGGAGAGGGAGAGCAAGGTGGTCGTCCCGCCTCTCCCAGGAAAAGCTCTTTTCCGGCAGCTTCCGTTTCGAGGGGATGATGGGATATTTGATGACTCTTTCATCGAGGAGCGGAGACAGGCTCTGGAGCAGTTTCTCAACAAAGTGGCAGGTCACCCTCTAGCTCAGAACGAACGATGCCTGCACATGTTTCTACAGGACGAGTCTTTGGACAAGAACTACACCCCGTCCAAAATCAGACAAGCCTAAAAGAAAAGATGGTTCTGCTTGGCCTGGTCTGGCTTGGCTCTGGTCCGACACCCCAAAGCTCTCTTCACTGCTTCAGGTTTCTCTCAGacaataaacatttaaatgacAACTTCCCCTCCCCGCTCCACCCCAAAATAATATTGTTCACTTCCTCTTTTAGTTTACTTAGTGACCCTGATCTGTGTTTGTTTTCACTTTCTAATTGGCGTCAAGAATGTTCGACAAATAACTGTGGTTGAAAgtaatttatattattttctCTTTACGTCTGGAAATGTCACTAACATGGATATATTATGTATTTATCATTTAGCTGCCATGAATATATTCATTTATATCGTAACATTGAATGAGCGTTCTATGTATGTAAAGCTCTTGTAAAGACCCACAGCGTTTCCCATCATATATATCCAATACTGGCATGTTGTGCACCATAACTagcaactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatttgatggGCCTTGACTTTCAAATCACACTTAGTTGATCCACTCTTCAAAAGGATGCACGTGTGTGTCGACCAGCACCTGCCCAGTTATCACAATGATTTTCTAGTAAGAAATAATTTACACAGAGAAACTGCAGTATTTCTACTGGCTATATGCATTTTGAGATTTGTATACTGCTGTgccatttttgtttattttgaagattttccAATAAAATAGATGAAATGTC

Function

symbol description
snx3 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Involved in heme biosynthetic process. Acts upstream of or within erythrocyte differentiation and hemoglobin biosynthetic process. Predicted to be located in endosome and phagocytic vesicle. Predicted to be part of retromer complex. Predicted to be active in early endosome membrane. Is expressed in digestive system; hematopoietic system; and vascular endothelium. Human ortholog(s) of this gene implicated in syndromic microphthalmia 8. Orthologous to human SNX3 (sorting nexin 3).

NR:

description
sorting nexin-3

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17918 SNX3_12; sorting nexin-3/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782671.1 True 1303 mRNA 0.44 4 21457561 21474022

Neighbor

gene id symbol gene type direction distance location
sesn1 sesn1,LOC102782344 coding upstream 134475 21274857 ~ 21323086 (+)
cd164 NA coding upstream 190988 21251980 ~ 21266573 (+)
ppil6 ppil6 coding upstream 206372 21247663 ~ 21251189 (+)
mrps10 mrps10 coding upstream 230756 21224551 ~ 21226805 (+)
dynlt1b dynlt1 coding upstream 278645 21177476 ~ 21178916 (+)
ostm1 ostm1 coding downstream 27729 21501751 ~ 21506824 (+)
drc1 NA coding downstream 38552 21512574 ~ 21525302 (+)
fndc1 fndc1 coding downstream 143317 21617339 ~ 21653568 (+)
LOC120546740 wtap coding downstream 206500 21680522 ~ 21686917 (+)
acat2 acat2,LOC102788057 coding downstream 213258 21687280 ~ 21693126 (+)
G186210 NA non-coding upstream 108980 21347944 ~ 21348581 (+)
LOC120546175 NA non-coding upstream 304377 21151444 ~ 21153184 (+)
G186106 NA non-coding upstream 395585 21060757 ~ 21061976 (+)
G186094 syne1,LOC103355013,LOC106946714 non-coding upstream 424379 21032641 ~ 21033182 (+)
G186088 LOC103355013 non-coding upstream 433683 21019821 ~ 21023878 (+)
G186220 NA non-coding downstream 530 21474552 ~ 21475304 (+)
G186297 NA non-coding downstream 66566 21540588 ~ 21542781 (+)
LOC120546760 NA non-coding downstream 271559 21745581 ~ 21746554 (+)
LOC120547080 NA non-coding downstream 358926 21832948 ~ 21833782 (+)
G186452 NA non-coding downstream 820420 22294442 ~ 22294697 (+)
gtf2h5 gtf2h5 other upstream 284922 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 1597344 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 1809405 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 1836778 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 1915729 19429595 ~ 19541832 (+)
erh erh,LOC100699790,LOC101174968 other downstream 470721 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 511757 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 806945 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1333857 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 1488011 22962033 ~ 22966010 (+)

Expression


Co-expression Network