chac1 (chac1)


Basic Information

Item Value
gene id chac1
gene name chac1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15602335 ~ 15604166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782709.1
CGCCGCTGCGCCATGTTATCGGGGGAAACGCTTTAAATCACCGTCGCTTGTCGACCGGGAGAAGATCAACCACAAGGCGTTTGAAACGTCGTCAGCTGTAAAGTATACCTCGATCTTTTCATTCGTGAACTTCAAGTTCGTAATGTCACAGGCCGGCAAAGCAGCTGGCCTAAACGggttttgattattattatttttttcattggttTGAAGGCCAAAGCGGCTGCCATGGATTTTTAAGGCATAATGCGGCACCTCTAATGCAACGGCAATGCATAGTGCAAGGCAAAATCAACCGCGAAATTCCATCTTCGCAACTGCTAAGCAGTTGGGCTCAAATACCGTCCGCGGTATACCTGCGAGCCAACCGGTACCACTGCTCCTGGACCGGAggaagctaacgctagctagctagctagtcctcTTAGCTAATAACATCAATTGAAAGAGTGACCCCATCAATTCATCTCAACGTCGTCAACACACTTGATCAAAATGAAGCCTCAACACATAACCACCGGGAAGACCAGCCTGTGGATCTTCGGGTACGGGTCACTGGTGTGGAAGCCTGACTTCAAGTACAGGAGGAGCCAGGTCGGTTACATTCAAGGCTACAAGAGACGGTTCTGGCACGGAGACAACTTCCATCGCGGGAACGACGTGTTGcCCGGAAGAGTGGTGACGCTGATTGAGGCTGATGACGCGAGCACTTGGGGTGTGGCATTCGAGGTGACAGGCTCTCAAGTCGAGGAGTCCCTGAAGTACCTCAATGTGCGCGAGACGGTCTGTGGCGGCTACATCACCAAAATGGTGGATTTCTTCCCCGAGGGGGAGAACCAGCCTCCGGTTCAGGCGCTGGTGTACATCGCCACCTCCGACAACGCCCTCTACCTGGGGCCGGCCAGCCCGGAGATGATTGGCATCCAGATCGCGGTGTGCAGAGGGAAGACGGGCCACAACCTGGAGTATCTGCTCCGGCTGGCTGAGTTCATGAGGAACAGCTGCCCGCACGTGGAAGACCATCACCTGTTCTCCATCGAGAAAGCAGCATTGACCATGGCGTCATCACTGACCGTGGCGTCCTTTCTGTTGGCAGCCCAGTAGCTCGTACCCTTTTTGTCTCACTATCTTATACTGTATGGTGGATgaatacatcacacacacaaactcacacacacacgcggctTTTCACATGCCATGCcatctgtttttatgttgtataataTAGCTTCACACTACCATCCATTGTACTTGAATCTAATACTCCAGAAGTGATAACAAAAGGGAAGCACGCTATtacgttttgtttttcagaagcATGACCTCATGTtaacattgtaaagttactTCTAGTACATGTTTGTACATCAGTTACAAAATGTATGATTACTTAATTGACTGTAAACATCtgtgtggtttttattttatttttttatgcacATTAACATTTGTTTTACTTGCACAGTTCAGATTCCATCCAGTCCATACAGATGGGACAGCAATTAATTGTGGTAGTTGAACCTGTTTGCAATAAATGGCTGCTGTGATaa

Function

symbol description
chac1 Predicted to enable Notch binding activity and gamma-glutamylcyclotransferase activity. Acts upstream of or within with a positive effect on glutathione catabolic process. Predicted to be located in trans-Golgi network. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; periderm; and solid lens vesicle. Orthologous to human CHAC1 (ChaC glutathione specific gamma-glutamylcyclotransferase 1).

NR:

description
glutathione-specific gamma-glutamylcyclotransferase 1-like

GO: NA

KEGG:

id description
K07232 CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782709.1 True 1550 mRNA 0.48 3 15602335 15604166

Neighbor

gene id symbol gene type direction distance location
dll4 dll4,LOC104955063 coding upstream 4442 15588083 ~ 15597893 (+)
vrtn vrtn coding upstream 301628 15296281 ~ 15300707 (+)
slc25a29 LOC103369942,LOC106518591 coding upstream 315484 15277585 ~ 15286851 (+)
ppp2r5cb LOC103369946,LOC101473650,LOC100694131,LOC104924693 coding upstream 428753 15142703 ~ 15173582 (+)
hsp90aa1.2 LOC107100300,LOC103369947,LOC105919227,LOC103155532,LOC103457915 coding upstream 460942 15135367 ~ 15141393 (+)
zfyve1 LOC100698556 coding downstream 76295 15680461 ~ 15687727 (+)
stx7l stx7 coding downstream 125881 15730047 ~ 15738980 (+)
ccn2a ctgf coding downstream 168494 15772660 ~ 15776217 (+)
tmem200a tmem200a coding downstream 249644 15853810 ~ 15877749 (+)
itpkb itpkb coding downstream 381917 15986083 ~ 16014859 (+)
G184481 NA non-coding upstream 108808 15493204 ~ 15493527 (+)
G184474 NA non-coding upstream 123255 15478491 ~ 15479080 (+)
G184465 NA non-coding upstream 279447 15322575 ~ 15322888 (+)
G184463 NA non-coding upstream 280213 15321746 ~ 15322122 (+)
G184461 NA non-coding upstream 282096 15320018 ~ 15320239 (+)
G184509 vps18 non-coding downstream 50680 15654846 ~ 15655520 (+)
G184508 pigh non-coding downstream 74831 15678997 ~ 15680159 (+)
G184521 NA non-coding downstream 173063 15777229 ~ 15780546 (+)
G184526 sel1l,LOC104966051,LOC107585782,LOC107721334 non-coding downstream 193649 15797815 ~ 15798794 (+)
G184561 NA non-coding downstream 285199 15889365 ~ 15889585 (+)
G184458 NA other upstream 283499 15301925 ~ 15318836 (+)
LOC120546207 NA other upstream 309083 15289674 ~ 15293252 (+)
hsp90aa1.1 LOC103369948 other upstream 467475 15129476 ~ 15134860 (+)
G184258 NA other upstream 1072965 14525136 ~ 14529370 (+)
LOC120546619 LOC103359912,LOC102080314 other upstream 1177471 14393440 ~ 14424864 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other downstream 56407 15660573 ~ 15663661 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other downstream 90778 15694944 ~ 15719632 (+)
LOC120546249 NA other downstream 310420 15914586 ~ 15968123 (+)
nkain2 nkain2 other downstream 643928 16248094 ~ 16391851 (+)
cenpw NA other downstream 775313 16379479 ~ 16381856 (+)

Expression


Co-expression Network