LOC120547228 (LOC104952422,LOC104931204)


Basic Information

Item Value
gene id LOC120547228
gene name LOC104952422,LOC104931204
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11546186 ~ 11548350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782719.1
GGCTGCTCCACTCTAACCCTGAGCCTTTTGGATAGAGACGGAGCTTTATTCTTCTGACAGTCGCAAAGACAACATGGACGTCCACAGAGTGTCTAACCACAACCAAATGGATTATAACTTCGACAGCATGGAGCCAAAACACGGGAAAATATTGCATTGTCAAGACGACCGTTTAGACAGCGGCCTGGAGTCCCTGAAGGAGGACGAGCTGGTGAACGTGTTTGAGGATATGAATATGAACTTTAACGAGGAGCCCGCACAGGAATACGAGCCGTGGAGAGCTGCGGTGACTGAGGATGGTGACACGCTTCTCCACTTGGCCATCATTCATGAAGCAAAAGAACATGCCTTTCAGATGATCAAACTTTCTCACAATCACCCCTTCCTCAATGCACAGAACCACCAGAGACAGACTGCCCTCCACCTCGCAGTGATCACGGAGCAGCCCCAGTTAGTGGAGAGGCTTCTGAATGCCGGCAGTGACCCGTGTATGGCCGACGACAGCGGGAACACAGCTCTCCACATCGCCTGCAAGAAGGGCTCCCTCGCCTGCTTCGGCGTCATCACCCAGAACTGCAAACGCCACATCACGTCCATGGTGACCTTCCCCAACTACAGTGGACATAACTGTCTCCACTTGGCGTCCATTAACGGCTACATTTCATTGGTCGAAAGCCTCGTTCGGCTGGGTGCAGACATCAACGCACAGGAACAGTGCAGCGGACGGACGTCGCTCCACCTGGCCGTCGATCTACAGAACCCCGCGCTGGTCCATCACCTGCTCGAACTCGGCGCGGACGTCAACTGCTTCAACTACGGCGGCTTCACGCCGTACCACCTCACGTACGGACGCCAGAACGAAGAGATCCGCCGGCAGCTGTACGAGAGGACGGCACAGGAGCTGAGGGAGCTGCCCGACAGCGAATCAGATGAGAGCGACATGGAGGATCTGGAGTCATCGGAAGATGAGTTGTACGATGACATAAAGTTCGGAAAGTAAACCATCTCTTACCGGTGGTGTGAACGACAGTGAAGCTGCTACTGGGTTGCCCAGCCACGGAcggccaccccccccccctccaacgTGGGA

Function

NR:

description
PREDICTED: NF-kappa-B inhibitor alpha-like

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782719.1 True 1090 mRNA 0.55 6 11546186 11548350

Neighbor

gene id symbol gene type direction distance location
glrx5 glrx5 coding downstream 817661 10724470 ~ 10728525 (-)
pla2g7 pla2g7,LOC102800283 coding downstream 837349 10693839 ~ 10708837 (-)
sf3b6 sf3b6,pm14,SF3B6 coding downstream 879886 10662117 ~ 10666300 (-)
fam49a fam49a coding downstream 1096776 10398802 ~ 10449410 (-)
fzd3a fzd3 coding downstream 1167059 10347000 ~ 10379127 (-)
LOC120546403 NA coding upstream 27123 11575473 ~ 11576057 (-)
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding upstream 71354 11619704 ~ 11634330 (-)
LOC120547092 psmc1 coding upstream 90496 11638846 ~ 11650060 (-)
kcnk13b kcnk13,LOC106526329 coding upstream 111644 11659994 ~ 11673089 (-)
tshr tshr coding upstream 345184 11893534 ~ 11918141 (-)
G183685 NA non-coding downstream 2121 11540514 ~ 11544065 (-)
G183682 NA non-coding downstream 8735 11536271 ~ 11537451 (-)
G183665 NA non-coding downstream 45533 11500081 ~ 11500653 (-)
G183656 NA non-coding downstream 98867 11446975 ~ 11447319 (-)
G183639 NA non-coding downstream 335393 11189654 ~ 11210793 (-)
G183720 brms1l,LOC103358934 non-coding upstream 37686 11586036 ~ 11590560 (-)
G183732 NA non-coding upstream 110088 11658438 ~ 11658962 (-)
G183734 NA non-coding upstream 110704 11659054 ~ 11659573 (-)
G183747 NA non-coding upstream 150702 11699052 ~ 11699965 (-)
G183753 NA non-coding upstream 198781 11747131 ~ 11747593 (-)
G183650 NA other downstream 171571 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 935561 10455244 ~ 10610625 (-)
G183528 NA other downstream 1024776 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 1445125 10099478 ~ 10101061 (-)
G183176 NA other downstream 2412714 9129573 ~ 9133472 (-)
ost4 NA other upstream 1358952 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 1412148 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 1597114 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 1707535 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 1910252 13458602 ~ 13468065 (-)

Expression


Co-expression Network