faua (fau)


Basic Information

Item Value
gene id faua
gene name fau
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14699966 ~ 14702153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782857.1
CCATTAACCGCATCACCTTCAACCTCCATAGCGTGGTGGGCGTGGCCACTGCTTTCGACATGGTTACGTAAATCCGCACATGCGCAGTGTCGGCCCTTATACAGCCCTTTCTATGCCTAGCGTTGAACGACTAGCATCAAACGAGCATCAAGATGCAGCTCTTCTTGCGTGCCCAGAACACTCACACCCTTGAGGTGACCGGACAGGAGACTGTTGGACAGATCAAGGCCCATGTCCAGGATCTGGAGGGTCTCCTGGTTGAGGATCAGGTGCTGTTGCTTGCTGGTAGCCCACTGGAGGATGATGCTTGCCTGGCATCCTGTGGTGTCTCAGAGCACTGCACCCTGGAGGTAGCTGGCAGGCTGCTGGGAGGTAAGGTTCACGGCTCTCTGGCCCGTGCTGGAAAAGTGAGGGGACAGACACCCAAGGTTGACaagcaggagaagaagaaaaagaggactGGCCGTGCTAAGCGTCGCATCCAGTACAACAGGCGCTTTGTGAACGTGGTGCCCACCTTCGGAAAGAAGAAGGGACCCAACGCCAACTCCTAAGTGTTCCAATGTCCAAAAGGAGAAACCTGATCACATCCCATCGGTTTTTACAAGTTGAAATGTTATCCTGCTGTACAGAATAATAAATTTGGCTTGGACAAAAGAGAA

Function

symbol description
fau A structural constituent of ribosome. Involved in antimicrobial humoral immune response mediated by antimicrobial peptide and defense response to other organism. Located in cytosolic ribosome and extracellular space. Part of cytosolic small ribosomal subunit.

NR:

description
ubiquitin-like protein fubi and ribosomal protein S30

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02983 RP-S30e, RPS30; small subunit ribosomal protein S30e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782857.1 True 662 mRNA 0.53 5 14699966 14702153

Neighbor

gene id symbol gene type direction distance location
prpf39 prpf39 coding upstream 473 14682241 ~ 14699493 (+)
LOC120546154 LOC104941296,LOC103359897,LOC103457903,LOC103152668,LOC102206909,LOC100705127,LOC106954560 coding upstream 65506 14629113 ~ 14634460 (+)
LOC120547239 c7h14orf37,LOC107717645,LOC107659812 coding upstream 97146 14595161 ~ 14602820 (+)
LOC120546629 NA coding upstream 151035 14540615 ~ 14548931 (+)
LOC120547075 LOC103359908,LOC104919811,LOC101483143,LOC100706096,LOC102294806 coding upstream 162699 14529471 ~ 14537267 (+)
LOC120546410 NA coding downstream 236765 14938918 ~ 14954916 (+)
mgat2 mgat2 coding downstream 411017 15113170 ~ 15116784 (+)
hsp90aa1.2 LOC107100300,LOC103369947,LOC105919227,LOC103155532,LOC103457915 coding downstream 433214 15135367 ~ 15141393 (+)
ppp2r5cb LOC103369946,LOC101473650,LOC100694131,LOC104924693 coding downstream 440550 15142703 ~ 15173582 (+)
slc25a29 LOC103369942,LOC106518591 coding downstream 575432 15277585 ~ 15286851 (+)
G184345 NA non-coding upstream 32379 14667226 ~ 14667587 (+)
G184343 NA non-coding upstream 37485 14662094 ~ 14662481 (+)
G184342 NA non-coding upstream 38836 14660746 ~ 14661130 (+)
G184341 NA non-coding upstream 39231 14660319 ~ 14660735 (+)
G184339 NA non-coding upstream 43719 14655634 ~ 14656247 (+)
G184390 NA non-coding downstream 407481 15109634 ~ 15110077 (+)
G184389 NA non-coding downstream 408090 15110243 ~ 15111605 (+)
G184419 NA non-coding downstream 471537 15173690 ~ 15174130 (+)
G184431 NA non-coding downstream 500153 15202306 ~ 15202515 (+)
LOC120547009 NA non-coding downstream 554980 15257133 ~ 15264717 (+)
G184258 NA other upstream 170596 14525136 ~ 14529370 (+)
LOC120546619 LOC103359912,LOC102080314 other upstream 275102 14393440 ~ 14424864 (+)
G184231 NA other upstream 318779 14362341 ~ 14381187 (+)
LOC120546742 plcb1 other upstream 559197 14024484 ~ 14140769 (+)
LOC120546706 wdcp other upstream 1225807 13468235 ~ 13474159 (+)
hsp90aa1.1 LOC103369948 other downstream 427323 15129476 ~ 15134860 (+)
LOC120546207 NA other downstream 587521 15289674 ~ 15293252 (+)
G184458 NA other downstream 599772 15301925 ~ 15318836 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other downstream 958420 15660573 ~ 15663661 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other downstream 992791 15694944 ~ 15719632 (+)

Expression


Co-expression Network