LOC120547336 (LOC104951086,LOC103372628)


Basic Information

Item Value
gene id LOC120547336
gene name LOC104951086,LOC103372628
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18754893 ~ 18760888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782905.1
AGAGAGGAGGGCAGAGAGATGAAGGAGAATCACAGAGCTGATTGCATCAGGGACtggcttttattttgagggAGTGGAAGACAAAAAGTGAAATCTCATCGCCATGACAGGGAAGGAGGGAGTTGTGCTCTCAGACACTGTGAATAGACAGAAATCAGCCTCACAAACCAGCTTGAACCACGGGGGATCCCAGCAGCCAGTCTGGAAGATGGCTCCCACGGTGCACCGGCGCACCGGCTTTGGGATCCAGGAGCTGCTCGGCCTCAACAAGGAGCCGCCGGCGGCCCCGAGGCGGCCGCTGGAGGCTCTGCCGCACAGTGCGCACGTCCTGGCCGCCAGGTCGGCCCTCGGACACGGCGGTCTCGGGGTCGGTGTGGGTTTGCTGGGACCAGAGGGAATACACTCGTTTTATAGCCAGCCTGCTTTTCTGGAGGTGCTGGCAGAGGCGCAGAATGTGCACCTGCATCCGCTGCACAGAGCGGCGCACATGGACCCACAGAGGGAGGCGCAGCACTCCGCCAGCTCTGATTCTGATGACATGAGTCTCTCCTCCGGTGATCAAAAGTTCTCTAAATCATCAATGAGTCAGAGCAAGAAACGAAAGAAAAGACGacacagAACCATTTTCACTTCCTATCAGCTGGAGGAGCTGGAGAAAGCTTTCAATGAAGCCCACTATCCAGATGTTTACGCCAGAGAAATGCTCTCCATGAAGACTGAGCTACCAGAAGACAGAATACAGGTGTGGTTTCAGAACCGCAGGGCCAAGTGGAGGAAAAGGGAGAAGTGTTGGGGTCGCAGCAGCGTGATGGCAGAGTACGGCCTCTACGGAGCTATGGTCCGTCACTCCATCCCCCTGCCCGAGTCCATCCTCAAGTCAGCCAAGGAGGGCGTCACAGACTCCTACGCTCCGTGGTTATTAGGTATGCACAAGAAGTCAGTTGATAccacacacacctcccctggAAAACCCTGCAGcctcacaccaccaccaccaccaacaacaacacaggaGAAACCAGTGGACAAAGTGATGCAGGAACAGACACGGATGAAAGACACTACTAACGCATCCATTTCTAAAGAGGAAATGAGGGAGAACAGTATTGCTGCGCTGCGAGCTAAGGCGCAGGAACACAGCGCTAAGGTGCTGGGGACAGTTTCCGACAAAACAAACGACCACGTAACCCATAAAGAGGAAGCTGAGGACAATGTGATGGAGCAGGGAACAGCAGAAGTGAAGAAGAGTGACTGAAAGAAGCTGCAGGATACAGACTGATGGTGAAAATACCTGCAGAGTGGAGTTTTCAGAATTCAGAGGCAGATGTTTCATTGGTTGAGTTGAACCTCGGTGCACGTGGAGTCTGAACTGTTGATCAAACCCACAGATCAAATATCAGTCATAGATAAGTGAATgagaaattattttctttatccaCTTGAGCTTACCTGTCAAGGTAACTGAAGGTTCTTTGGCTCCAACGATTGTGATGTATTAACTAAACCAATGAGATTATTTCTTCCTCACTGAAATATTTGTACAGCAAACTACACAACACCTTTTCATGTCGCCTTCTGTGAGAGAATGAAGAAGGCTTAAACATGGAAATGTTTTCGTAACATTTACTGCAGATGTTCTGATATGGAgctgtgttaaaaaatatatatatatttattttctttaaaatagatTAACTAGTACTGTGATATGGCAGCTATACTTTTATGCAACAGCAAGAATAAAGATGTTTATGGAAGTAAGTCTCCTTTCAACAAGCATCTCAAGCAAGAAATTGACTATACCTGATCTAGAGGTGCTAATGAGATGAATGTGAACTCCCTGTGATGAATGATTAATTTTAGTTGGGTGACTAAAAAGCATACAGTTGGTATCAATTCCCGTGAAGATTACAAGCCTAAATCTTTTGTTTTCCTTCAAATGTTGCAACATTTGTGATATACATACTGAAAATATTGTCCAATAGATAACACTGTAATGTTATGTACAGTTTACATtatctgtgtttgtctctgtataCATGTAACTGTATAAATGTAACTCTGGCCTAATTAAAAGTTACTGCTATTTAAAGTCCCCA

Function

NR:

description
PREDICTED: visual system homeobox 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09336 VSX2, CHX10; visual system homeobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782905.1 True 2099 mRNA 0.47 5 18754893 18760888

Neighbor

gene id symbol gene type direction distance location
eif2b2 eif2b2 coding upstream 17202 18733328 ~ 18737691 (+)
tmed10 tmed10 coding upstream 31907 18717023 ~ 18722986 (+)
fosab LOC104951064,LOC103372631,LOC100709203 coding upstream 56789 18695655 ~ 18698104 (+)
LOC120547135 LOC104964429,LOC103372634 coding upstream 100379 18648301 ~ 18654514 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding upstream 173770 18500991 ~ 18581123 (+)
LOC120546187 acss1,LOC100712210,LOC102211118,LOC102308435,LOC101486165,LOC103364973 coding downstream 529 18761417 ~ 18779102 (+)
LOC120546186 kcnh5,LOC103364987 coding downstream 37369 18798257 ~ 18813714 (+)
LOC120546190 l3hypdh coding downstream 53721 18814609 ~ 18818443 (+)
trnae-cuc_27 NA coding downstream 171428 18932316 ~ 18932387 (+)
gata4 gata4,LOC102782453 coding downstream 187432 18948320 ~ 18958802 (+)
G185471 NA non-coding upstream 49659 18703965 ~ 18705234 (+)
LOC120546607 NA non-coding upstream 64860 18666640 ~ 18690033 (+)
G185415 LOC106525279 non-coding upstream 109739 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 114512 18636374 ~ 18640381 (+)
LOC120546827 NA non-coding upstream 290865 18443952 ~ 18464028 (+)
G185495 daam1,LOC108240128 non-coding downstream 58196 18819084 ~ 18821146 (+)
G185589 NA non-coding downstream 253838 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 261808 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 263376 19024264 ~ 19024578 (+)
G185592 kcnk2 non-coding downstream 282336 19043224 ~ 19043548 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 42899 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 119841 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 614633 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 699967 18020956 ~ 18054926 (+)
G185237 NA other upstream 837645 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 443266 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 593728 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 606832 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 668707 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 811685 19572573 ~ 19620783 (+)

Expression


Co-expression Network