LOC120546176


Basic Information

Item Value
gene id LOC120546176
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20989305 ~ 20991418 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636824.1
GACTGTGGGTAAAAAGCAGCCCAAAAACAGCCGTTGTAAAATCCGTTGAGCAAGGGGCGGTTGAGTTAACGTTAATTTCCCGCACTGTAACATCCGCGAGATCAACCCCCTCTATCCAGCTTTTTTGACAGCCGAAAGAAGTGCCAGAAGAGGTAGTAGGCAGTGGAGGTCTTGGAAATAGATTTGAAACAAACCACACATTGACTGGCACAGGAAGTGTATGAGGACCTTTTGCACAAATGGACTTTGGAGTCACATCAATTTTTTGTCATCAGATGTTGCCCCAGTGTAAACACCATTTTTCTTTCCCAGAACTGTCATTACAGAGTTGCATTTCAGCCTTTGGACAGGGAGTCCGCAGAAGGACCAGACTAAGCACACTGTAGCTCTCTGAAAAGGCTTGCTCGACAGGCAGAGAATAGGTGGAGAGATTTTAAGGGAACCGAAGACATGAGACATGTAAACAGGGTCTTAGAACCTTAAAGTCTCTGTCCTGTCAACAAACAACAGACCTAGATCTGACCCATCACAATTTCACTGAAACGAATAAGCTAAACAAAATATAGACCTGCGGGGTACAAAAATGTTTACTTTGCTGAATGTCCCACAGCAGGGGTTTATTGAAAGAAGATAAACTGTTACCAAGCTggctcattgtttttttttatcaatatcaATTATAATCAATAGATTTTTATGATAATGCTCTACCATTAGGACTTAGGATAAATGAGGAAATCCTGTCTGCCTCTGTTCATATGGATGCCCTAATCCTTCTcctgtggaagaaaaaaaagagactggaCTTTCAAATGACTGCCCTGCCACTGATTCCCAGTAAATTGATTTTTTCCTGCCtaatacatattaaaaaaatacaacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636824.1 True 885 lncRNA 0.41 2 20989305 20991418

Neighbor

gene id symbol gene type direction distance location
akap12b akap12,LOC102289546,LOC102211499,LOC102799877 coding upstream 9142 20937518 ~ 20980163 (+)
mthfd1l mthfd1l coding upstream 60544 20891408 ~ 20928761 (+)
LOC120547338 NA coding upstream 107718 20878480 ~ 20881587 (+)
epm2a epm2a coding upstream 350591 20628841 ~ 20638714 (+)
LOC120546927 LOC104961664 coding upstream 366674 20617250 ~ 20622631 (+)
armt1 armt1 coding downstream 1048 20992466 ~ 20996625 (+)
esr1 esr1 coding downstream 8156 20999574 ~ 21012236 (+)
myct1a myct1,LOC103355010 coding downstream 168538 21159956 ~ 21162886 (+)
serac1 serac1,LOC102777075 coding downstream 171800 21163218 ~ 21170361 (+)
dynlt1b dynlt1 coding downstream 186058 21177476 ~ 21178916 (+)
G186035 utrn non-coding upstream 230499 20746317 ~ 20758806 (+)
G186025 NA non-coding upstream 286661 20693170 ~ 20702644 (+)
LOC120546929 NA non-coding upstream 361040 20626548 ~ 20628265 (+)
LOC120546242 NA non-coding upstream 629696 20261785 ~ 20359609 (+)
G185869 mettl24 non-coding upstream 1009215 19945093 ~ 19980090 (+)
G186088 LOC103355013 non-coding downstream 28403 21019821 ~ 21023878 (+)
G186094 syne1,LOC103355013,LOC106946714 non-coding downstream 41223 21032641 ~ 21033182 (+)
G186106 NA non-coding downstream 69339 21060757 ~ 21061976 (+)
LOC120546175 NA non-coding downstream 160026 21151444 ~ 21153184 (+)
G186210 NA non-coding downstream 356526 21347944 ~ 21348581 (+)
kif25 LOC104961976,LOC100703631 other upstream 1129088 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 1341149 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 1368522 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 1447473 19429595 ~ 19541832 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other upstream 1600082 19367720 ~ 19389223 (+)
gtf2h5 gtf2h5 other downstream 179530 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 953325 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 994361 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 1289549 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1816461 22807879 ~ 22810520 (+)

Expression


Co-expression Network