LOC120546607


Basic Information

Item Value
gene id LOC120546607
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18666640 ~ 18690033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636898.1
TCCCACTCATCACCACTGTTGACCTCTTGAGCCTGGGTTGGCTTCTCCTCGTCCTCCAGCTGATCCTGGCTTCCTGTGGGCAGGACTGACTGATCAGATAGCTgctgctcttcctcttcctcttcttcactgatctcctccCACTGATCCATCATCACACCGCGAGATCCTGGCAGCCTCCCTGTATCTGCAAGAAGCCCTGAGCAGAGAGCTGCCCAAATGATGAATGGTGACGAGAGCAGTTTGTGGTTTTGCAGCATTGCCACACTCAGGCAGAGTTCTTGCTGTGTGGGCATCAGAAGTCAAGTCCTTTCCTGTTGGAGGGCTTTGCCTTGTTTGCCGCGGAAGACGACTGAGTTTTGGTTTTTGCACGGCGGGACGACGGGGAGACAGATGTGATGACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636898.1 True 405 lncRNA 0.54 3 18666640 18690033

Neighbor

gene id symbol gene type direction distance location
LOC120547135 LOC104964429,LOC103372634 coding upstream 12126 18648301 ~ 18654514 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding upstream 85517 18500991 ~ 18581123 (+)
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding upstream 224378 18419656 ~ 18442262 (+)
batf batf coding upstream 247480 18414012 ~ 18419160 (+)
zc3h14 zc3h14 coding upstream 257563 18402072 ~ 18409077 (+)
fosab LOC104951064,LOC103372631,LOC100709203 coding downstream 5622 18695655 ~ 18698104 (+)
tmed10 tmed10 coding downstream 26990 18717023 ~ 18722986 (+)
eif2b2 eif2b2 coding downstream 43295 18733328 ~ 18737691 (+)
LOC120547336 LOC104951086,LOC103372628 coding downstream 64860 18754893 ~ 18760888 (+)
LOC120546187 acss1,LOC100712210,LOC102211118,LOC102308435,LOC101486165,LOC103364973 coding downstream 71384 18761417 ~ 18779102 (+)
G185415 LOC106525279 non-coding upstream 21486 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 26259 18636374 ~ 18640381 (+)
LOC120546827 NA non-coding upstream 202612 18443952 ~ 18464028 (+)
G185374 NA non-coding upstream 269469 18396866 ~ 18397171 (+)
G185361 NA non-coding upstream 352161 18314228 ~ 18314479 (+)
G185471 NA non-coding downstream 13932 18703965 ~ 18705234 (+)
G185495 daam1,LOC108240128 non-coding downstream 129051 18819084 ~ 18821146 (+)
G185589 NA non-coding downstream 324693 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 332663 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 334231 19024264 ~ 19024578 (+)
ylpm1 ylpm1 other upstream 31588 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 526380 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 611714 18020956 ~ 18054926 (+)
G185237 NA other upstream 749392 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 973006 17674393 ~ 17693634 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 15823 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 514121 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 664583 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 677687 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 739562 19429595 ~ 19541832 (+)

Expression


Co-expression Network