LOC120546827


Basic Information

Item Value
gene id LOC120546827
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18443952 ~ 18464028 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636953.1
ACAGGTGCATTCTGGATCTTTCTCCTAAATTGTACCTACAGAGGCTCAAGTCATTATACAGCTCAAATTGTTAAAACGGGTTACTTTGAGGAGTGCGTGGACTGGTTACATCGTGCTTTGAGAATAAACGAACAAAGAAGTTAAACCTGGAGCAGATTGAGGAGGACTTTACGGTGCATAAAGCTCACAAAAAGCGcatttactatctaactgggacgttttcaGACCGATTGGTTGGGATTtgatatggacaaaatacacaaggtgatacactggagtgtATGTGTAGaggggccagaccttactctgcagcgctgtggagatatgtCTGATGGGGCCGTACCAGGCAAAGCAGACTTCATGGCTGTCGACTTCACTTGCATGTGATTGGCAAGTCAGACATTTCAGAATGATGGATGTGTTTTCCCTGCTGACGCTTTATTTGACACAACTGTTTAAAAAGACTGAATACAGCCCTACATTGTCAGGCAGAATCTCTCTGGTGTATATGGTACTTCACTACACTTCACTTTTGGGAGATAGTAGATTAAAAAAAGTGGTCAAAGAGAGCAGCAATGGACATATGGAGCATCTATAACGAGTCCAAATTTTGCTGTataattaattgtctcagaaataattgcgattaacaa
>XR_005636954.1
ACAGGTGCATTCTGGATCTTTCTCCTAAATTGTACCTACAGAGGCTCAAGTCATTATACAGCTCAAATTGTTAAAACGGGTTACTTTGAGGAGTGCGTGGACTGGTTACATCGTGCTTTGAGAATAAACGAACAAAGAAGTTAAACCTGGAGCAGATTGAGGAGGACTTTACGGTGCATAAAGCTCACAAAAAGCGcatttactatctaactgggacgttttcaGACCGATTGGTTGGGATTtgatatggacaaaatacacaaggtgatacactgaccattttgcagagccaccgtcgctacgccgcccaagacgattgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636953.1 True 653 lncRNA 0.42 4 18443952 18464028
XR_005636954.1 False 321 lncRNA 0.44 3 18443952 18462608

Neighbor

gene id symbol gene type direction distance location
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding upstream 1690 18419656 ~ 18442262 (+)
batf batf coding upstream 24792 18414012 ~ 18419160 (+)
zc3h14 zc3h14 coding upstream 34875 18402072 ~ 18409077 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding upstream 85039 18347236 ~ 18358913 (+)
chrna2b LOC104964447,LOC101470861 coding upstream 150117 18283900 ~ 18293835 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding downstream 36963 18500991 ~ 18581123 (+)
LOC120547135 LOC104964429,LOC103372634 coding downstream 184273 18648301 ~ 18654514 (+)
fosab LOC104951064,LOC103372631,LOC100709203 coding downstream 231627 18695655 ~ 18698104 (+)
tmed10 tmed10 coding downstream 252995 18717023 ~ 18722986 (+)
eif2b2 eif2b2 coding downstream 269300 18733328 ~ 18737691 (+)
G185374 NA non-coding upstream 46781 18396866 ~ 18397171 (+)
G185361 NA non-coding upstream 129473 18314228 ~ 18314479 (+)
G185360 NA non-coding upstream 135217 18308335 ~ 18308735 (+)
G185359 NA non-coding upstream 138375 18305254 ~ 18305577 (+)
G185357 NA non-coding upstream 140987 18302698 ~ 18302965 (+)
G185414 NA non-coding downstream 172346 18636374 ~ 18640381 (+)
G185415 LOC106525279 non-coding downstream 179391 18643419 ~ 18645154 (+)
LOC120546607 NA non-coding downstream 202612 18666640 ~ 18690033 (+)
G185471 NA non-coding downstream 239937 18703965 ~ 18705234 (+)
G185495 daam1,LOC108240128 non-coding downstream 355056 18819084 ~ 18821146 (+)
znf513a znf513,LOC102795572 other upstream 303692 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 389026 18020956 ~ 18054926 (+)
G185237 NA other upstream 526704 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 750318 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 757554 17669172 ~ 17686398 (+)
ylpm1 ylpm1 other downstream 134337 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 241828 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 740126 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 890588 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 903692 19367720 ~ 19389223 (+)

Expression


Co-expression Network