LOC120546874


Basic Information

Item Value
gene id LOC120546874
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29966970 ~ 29979067 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636974.1
TGAGCATCAGaacaagagagagaaggagcagagacacagagaagcaCGATGGAAGAGTTCAAATGgatcaaaatgtctttatttctgaTACTGCTGCTTCACTTTACAGCTGCTACAGTATCACCATATTACACCACGGACATCAAGAGTGAAATCCTGCTGGGGGAGGAGTTTGACTCTTCagctgtgtgttcatgtgtgctgTCAAACATCACCATGAATCCTGTCTGGTTTCTAATAAACACCATCTGAAGAAAACAAGCTGCATTACTGCAAACACTTATCTTAACCAACAAtcttgtgaaaataaaaaaaataaaaactttttggTTGTTTGGCGTCTATAGTCTATAATATAATCAAACAgtctacccctaaccctaaaagtCATTatgaggaagtgacatcatcctAATTACAGGAAGTAGATACAGCGTCTCTTGACTAAAGCACTATTTTAGAAACAGTTCTGAGCatcagaacgagagagagaagaagcagagacacagagaagcaCGATGGAAGAGTTCAAATGgatcaaaatgtctttatttctgaTACCGCTGCTTCACTTTACAGCAGCAGCTGGAAACCATTTCCTCTCCTTCACTGTCAGAGCTGGAAATGAAGTCACTTTGCTTTACTTCACTTTACTTTGAACATGTGATAGACGGTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636974.1 True 678 lncRNA 0.40 3 29966970 29979067

Neighbor

gene id symbol gene type direction distance location
LOC120546870 NA coding upstream 23137 29895425 ~ 29943833 (+)
LOC120546867 NA coding upstream 84246 29876921 ~ 29882724 (+)
LOC120546866 LOC103363081,LOC108247050,LOC101159876,LOC107104461 coding upstream 91146 29861374 ~ 29875824 (+)
LOC120546480 NA coding upstream 595820 29315759 ~ 29371150 (+)
slc30a2 slc30a3,LOC102796772 coding upstream 746243 29196169 ~ 29220727 (+)
LOC120546436 NA coding downstream 33088 30012155 ~ 30022642 (+)
LOC120546869 NA coding downstream 49883 30028950 ~ 30083063 (+)
zfand3 zfand3,LOC104930467,LOC103365830,LOC101473384,LOC100698322,LOC106531772 coding downstream 120892 30099959 ~ 30115805 (+)
galnt14 galnt14,LOC103365833,LOC102790467 coding downstream 146396 30125463 ~ 30323344 (+)
trnat-ugu_4 NA coding downstream 394599 30373666 ~ 30373738 (+)
LOC120546875 NA non-coding upstream 31484 29934594 ~ 29935486 (+)
G188323 NA non-coding upstream 34110 29932550 ~ 29932860 (+)
LOC120546868 NA non-coding upstream 78086 29886864 ~ 29888884 (+)
LOC120546865 NA non-coding upstream 173291 29787961 ~ 29793679 (+)
LOC120546861 NA non-coding upstream 306235 29659256 ~ 29660735 (+)
G188333 NA non-coding downstream 48070 30027137 ~ 30027805 (+)
LOC120546872 NA non-coding downstream 75291 30054358 ~ 30056424 (+)
G188294 NA non-coding downstream 91942 30071009 ~ 30072741 (+)
G188344 NA non-coding downstream 118659 30097726 ~ 30098348 (+)
G188345 NA non-coding downstream 120033 30099100 ~ 30099414 (+)
G188296 LOC107662224,LOC107746645,LOC107750038,LOC107712283,LOC107663761 other upstream 321147 29645254 ~ 29645823 (+)
G188268 fabp7,LOC105924611,LOC105419070,LOC101079341,LOC102793361,LOC107727581 other upstream 503096 29461849 ~ 29463874 (+)
G188207 clvs2,LOC107675107 other upstream 546243 29419376 ~ 29420727 (+)
si:ch211-245h14.1 NA other upstream 654606 29292705 ~ 29312364 (+)
G188167 ucn other upstream 830053 29134171 ~ 29136917 (+)
btbd9 btbd9 other downstream 105481 30084548 ~ 30097239 (+)
angel2 NA other downstream 345905 30324972 ~ 30336202 (+)
G188352 NA other downstream 632614 30611681 ~ 30882446 (+)
LOC120546905 NA other downstream 815152 30794219 ~ 30812452 (+)
hivep2a LOC103373864 other downstream 1190000 31169067 ~ 31309396 (+)

Expression


Co-expression Network